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3. Bhattacharya, D., Nowotny, J., Cao, R., Cheng, J. (2016) 3Drefine: an interactive web server for efficient protein structure refinement. Nucleic Acids Research.    Web Server Issue. doi: 10.1093/nar/gkw336.

2. Bhattacharya, D., Cheng, J. (2013) i3Drefine software for protein 3D structure refinement and its assessment in CASP10. PLOS ONE. 8(7): e69648.

1. Bhattacharya, D., Cheng, J. (2012) 3Drefine: Consistent Protein Structure Refinement by Optimizing Hydrogen Bonding Network and Atomic Level Energy Minimization. Proteins: Structure, Function, and Bioinformatics. 81(1): 119-131.