GSDB : Genome Structure Database



GSDB is a database of three-dimensional (3D) chromosome and genome structures reconstructed from Hi-C data by multiple 3D modeling tools in the field. In recent years, numerous Hi-C datasets have been generated and many chromosome/genome structure construction algorithms have been developed. However, there is no public repository of 3D chromosome and genome structures available for the community to use.

GSDB aims to fill this gap by providing a comprehensive repository of 3D chromosome and genome structures reconstructed from for Hi-C data. We hope this database will enable the exploration of the dynamic architectures of chromosomes and genomes for biomedical research.

Over 50,000 structures from 12 start-of-the-art Hi-C data structure prediction algorithms for 32 Hi-C datasets each containing varying resolutions.