CASP9 Preliminary Results of Tertiary Structure Predictions Based on 107 Targets

 

1. The ranking of TS methods by the sum of TM scores of the NO. 1 models based on 107 targets:

RANKMethod NameSum of TM ScoresNO. of Targets
1Zhang-Server69.9966107
2QUARK69.6648107
3RaptorX68.9295107
4RaptorX-MSA68.7973107
5RaptorX-Boost68.7734107
6Seok-server67.2274107
7HHpredA66.8097107
8HHpredB66.8097107
9MULTICOM-CLUSTER66.7647107
10HHpredC66.5959107
11Phyre266.5446107
12chunk-TASSER66.4914107
13MULTICOM-REFINE66.105107
14MULTICOM-NOVEL65.8877107
15BAKER-ROSETTASERVER65.8469106
16MULTICOM-CONSTRUCT65.8228107
17FAMSD65.4859107
18ZHOU-SPARKS-X65.455107
19pro-sp3-TASSER65.4144106
20PconsM65.3708107
21gws65.1013106
22PconsD64.5521107
23Jiang_Assembly64.4705107
24Bilab-ENABLE64.2954107
25Pcomb64.2568107
26Jiang_THREADER64.1561107
27Pcons64.1015107
28chuo-fams64.013107
29IntFOLD-TS63.8497107
30CLEF-Server63.5125107
31GSmetaserver63.3617107
32MUFOLD-Server63.2622107
33PconsR63.0532107
34FALCON-SWIFT63.0258107
35ProQ262.961107
36prdos262.6786105
37ProfileCRF62.5714106
38Distill62.4167107
39SAM-T08-server62.403104
40circle62.2845106
41MUSTER61.9257107
423D-JIGSAW_V4-061.6537107
43FFAS03n61.4526107
443D-JIGSAW_V4-561.0499105
45BioSerf61.0189107
46FFAS03a60.7361107
47FFAS0360.0723107
48FFAS03ss59.2882107
49Atome2_CBS58.8766107
50Wolfson-serv58.5311106
51PRECORS58.0005104
52MUFOLD-MD57.8995107
53ProQ56.3168107
54MidwayFoldingServer55.6879100
55SAM-T06-server54.613105
56Ma-OPUS-server53.812107
57LMUserver52.897297
58panther50.086291
59MUSICS_server48.0906101
60rehtnap39.590788
61Yang_kdd28.429294
62STAT-PROTEUS23.007899
63BHAGEERATH20.9641107
64PLATO16.544480
65SAM-T02-server_AL1BLANK0
66SAM-T02-server_AL2BLANK0
67FUGUE_KM_AL1BLANK0
68SAM-T02-server_AL4BLANK0
69FUGUE_KM_AL4BLANK0
70SAM-T02-server_AL3BLANK0
71FUGUE_KM_AL5BLANK0
72FUGUE_KM_AL3BLANK0
73SAM-T02-server_AL5BLANK0

 

 

2. The ranking of TS methods by the sum of TM scores of the best models (with highest TM scores) out of five based on 107 targets:

RANKMethod NameSum of TM ScoresNO. of Targets
1Zhang-Server72.4911107
2QUARK72.0491107
3BAKER-ROSETTASERVER69.8038106
4RaptorX69.5939107
5RaptorX-MSA69.4845107
6RaptorX-Boost69.4689107
7MULTICOM-CLUSTER69.2929107
8ZHOU-SPARKS-X68.5686107
9chunk-TASSER68.1969107
10Pcomb68.1548107
11MULTICOM-CONSTRUCT68.1107107
12MULTICOM-REFINE67.9594107
13pro-sp3-TASSER67.9099106
14Seok-server67.8045107
15MULTICOM-NOVEL67.7025107
16PconsR67.4815107
17FAMSD67.4482107
18gws67.3097106
19Phyre267.2674107
20ProQ267.1903107
21Pcons67.1646107
22IntFOLD-TS66.953107
23Jiang_THREADER66.9362107
24PconsM66.921107
25HHpredA66.8097107
26HHpredB66.8097107
27Jiang_Assembly66.7713107
28chuo-fams66.7582107
29CLEF-Server66.7133107
30GSmetaserver66.7132107
31HHpredC66.5959107
32Bilab-ENABLE66.4256107
33PconsD66.1994107
34FALCON-SWIFT66.0295107
35MUSTER65.5417107
36circle65.4726106
37ProfileCRF65.269106
38MUFOLD-Server65.2564107
39prdos265.1749105
40ProQ64.7026107
41SAM-T08-server64.4675104
423D-JIGSAW_V4-563.8918105
43Distill63.4157107
44FFAS03n63.1765107
45PRECORS63.1335104
46SAM-T06-server63.1023105
473D-JIGSAW_V4-062.7003107
48FFAS03a62.2886107
49FFAS0361.7606107
50Atome2_CBS61.662107
51Wolfson-serv61.577106
52MUFOLD-MD61.3174107
53FFAS03ss61.0501107
54BioSerf61.0189107
55MidwayFoldingServer60.2454100
56LMUserver58.09497
57Ma-OPUS-server56.753107
58panther53.98991
59MUSICS_server49.4836101
60rehtnap47.503688
61Yang_kdd31.101694
62STAT-PROTEUS26.978899
63BHAGEERATH22.792107
64PLATO19.180180
65SAM-T02-server_AL100
66SAM-T02-server_AL200
67FUGUE_KM_AL100
68SAM-T02-server_AL400
69FUGUE_KM_AL400
70SAM-T02-server_AL300
71FUGUE_KM_AL500
72FUGUE_KM_AL300
73SAM-T02-server_AL500

 

 

3. The ranking of TS methods by the sum of GDT-TS scores of the NO. 1 model based on 107 targets:

RANKMethod NameSum of GDT-TS ScoresNO. of Targets
1Zhang-Server62.3212107
2QUARK61.9377107
3RaptorX61.5005107
4RaptorX-MSA61.4189107
5RaptorX-Boost61.2023107
6HHpredA60.1862107
7HHpredB60.1862107
8HHpredC60.0018107
9Seok-server59.9872107
10MULTICOM-CLUSTER59.2827107
11MULTICOM-REFINE58.9244107
12Phyre258.8658107
13MULTICOM-NOVEL58.6939107
14MULTICOM-CONSTRUCT58.6475107
15gws58.3244106
16chunk-TASSER58.2363107
17BAKER-ROSETTASERVER57.9809106
18FAMSD57.864107
19PconsM57.8566107
20ZHOU-SPARKS-X57.7792107
21pro-sp3-TASSER57.183106
22Pcomb57.1025107
23PconsD56.9928107
24Jiang_Assembly56.9163107
25IntFOLD-TS56.7105107
26Pcons56.7107
27Jiang_THREADER56.6277107
28chuo-fams56.3941107
29MUFOLD-Server56.2679107
30GSmetaserver56.2231107
31Bilab-ENABLE56.1664107
32CLEF-Server55.985107
33ProQ255.8207107
34ProfileCRF55.5964106
35FALCON-SWIFT55.5695107
36circle55.3123106
37prdos255.2323105
38PconsR55.2139107
39SAM-T08-server55.1402104
403D-JIGSAW_V4-054.5447107
41MUSTER54.477107
42FFAS03n54.3911107
43Distill54.1746107
44FFAS03a53.8774107
45BioSerf53.704107
463D-JIGSAW_V4-553.4699105
47FFAS0353.2488107
48FFAS03ss52.5326107
49Wolfson-serv51.8365106
50Atome2_CBS51.7326107
51MUFOLD-MD50.6309107
52PRECORS50.3192104
53ProQ50.1212107
54MidwayFoldingServer48.7258100
55SAM-T06-server47.6267105
56LMUserver46.511997
57Ma-OPUS-server46.1442107
58panther43.778491
59MUSICS_server41.4641101
60rehtnap32.522988
61Yang_kdd22.741194
62STAT-PROTEUS19.505999
63BHAGEERATH16.3412107
64PLATO13.507180
65SAM-T02-server_AL1BLANK0
66SAM-T02-server_AL2BLANK0
67FUGUE_KM_AL1BLANK0
68SAM-T02-server_AL4BLANK0
69FUGUE_KM_AL4BLANK0
70SAM-T02-server_AL3BLANK0
71FUGUE_KM_AL5BLANK0
72FUGUE_KM_AL3BLANK0
73SAM-T02-server_AL5BLANK0

 

 

4. The ranking of TS methods by the sum of GDT-TS scores of the best models (with highest GDT-TS scores) out of five based on 107 targets:

RANKMethod NameSum of GDT-TS Scores
1Zhang-Server64.5232
2QUARK64.0802
3BAKER-ROSETTASERVER62.2178
4RaptorX62.1899
5RaptorX-MSA62.1052
6MULTICOM-CLUSTER62.0191
7RaptorX-Boost61.9651
8ZHOU-SPARKS-X60.8926
9MULTICOM-CONSTRUCT60.8415
10Pcomb60.6919
11MULTICOM-REFINE60.6826
12Seok-server60.49
13gws60.4545
14MULTICOM-NOVEL60.4471
15HHpredA60.1862
16HHpredB60.1862
17chunk-TASSER60.0744
18HHpredC60.0018
19PconsR59.9514
20ProQ259.8555
21FAMSD59.7877
22Pcons59.6806
23PconsM59.579
24pro-sp3-TASSER59.5731
25Phyre259.4947
26IntFOLD-TS59.4142
27GSmetaserver59.3361
28CLEF-Server59.1324
29chuo-fams59.0804
30Jiang_Assembly58.9845
31Jiang_THREADER58.9788
32PconsD58.8011
33Bilab-ENABLE58.4648
34FALCON-SWIFT58.4209
35MUFOLD-Server58.2916
36circle58.0667
37ProfileCRF57.9892
38prdos257.7522
39MUSTER57.7277
40ProQ57.6903
41SAM-T08-server57.2258
42SAM-T06-server56.7438
433D-JIGSAW_V4-556.444
44PRECORS55.8373
45FFAS03n55.6836
463D-JIGSAW_V4-055.4274
47Distill55.2106
48FFAS03a55.0863
49FFAS0354.5748
50Wolfson-serv54.4307
51Atome2_CBS54.2499
52MUFOLD-MD54.2153
53FFAS03ss54.0592
54BioSerf53.704
55MidwayFoldingServer52.8304
56LMUserver51.6031
57Ma-OPUS-server48.829
58panther47.1152
59MUSICS_server42.8553
60rehtnap41.1767
61Yang_kdd25.1117
62STAT-PROTEUS22.6862
63BHAGEERATH17.7701
64PLATO15.429
65SAM-T02-server_AL10
66SAM-T02-server_AL20
67FUGUE_KM_AL10
68SAM-T02-server_AL40
69FUGUE_KM_AL40
70SAM-T02-server_AL30
71FUGUE_KM_AL50
72FUGUE_KM_AL30
73SAM-T02-server_AL50

 

 

5. The ranking of TS methods by the sum of MaxSub scores of the NO. 1 models based on 107 targets:

RANKMethod NameSum of MaxSub Scores
1Zhang-Server57.8906
2QUARK57.6071
3RaptorX57.0045
4RaptorX-MSA56.844
5RaptorX-Boost56.8221
6HHpredA55.7646
7HHpredB55.7646
8HHpredC55.568
9Seok-server55.0436
10MULTICOM-CLUSTER54.4089
11Phyre254.2408
12chunk-TASSER54.0886
13MULTICOM-REFINE53.9366
14MULTICOM-CONSTRUCT53.8347
15gws53.6785
16MULTICOM-NOVEL53.3107
17BAKER-ROSETTASERVER53.2468
18ZHOU-SPARKS-X53.2386
19PconsM53.2246
20FAMSD53.1953
21pro-sp3-TASSER52.8856
22Pcomb52.4177
23Pcons52.149
24PconsD52.1378
25IntFOLD-TS52.0068
26Jiang_Assembly51.8303
27GSmetaserver51.7128
28Bilab-ENABLE51.6358
29chuo-fams51.6193
30MUFOLD-Server51.4986
31Jiang_THREADER51.4787
32ProfileCRF51.3161
33ProQ251.1434
34circle51.1412
35prdos251.1125
36CLEF-Server50.9057
37SAM-T08-server50.4939
38FALCON-SWIFT50.4684
393D-JIGSAW_V4-050.0922
40PconsR49.9584
41FFAS03n49.8529
42FFAS03a49.6698
43Distill49.6404
443D-JIGSAW_V4-549.4246
45MUSTER49.2724
46BioSerf48.7956
47FFAS0348.6565
48FFAS03ss48.127
49Wolfson-serv47.3351
50Atome2_CBS47.1385
51ProQ46.5427
52PRECORS45.4992
53MUFOLD-MD45.2954
54MidwayFoldingServer43.7247
55SAM-T06-server42.6435
56LMUserver42.5663
57Ma-OPUS-server41.0163
58panther40.5244
59MUSICS_server36.8294
60rehtnap27.2113
61Yang_kdd18.1437
62STAT-PROTEUS14.6286
63BHAGEERATH11.2507
64PLATO9.5507
65SAM-T02-server_AL1BLANK
66SAM-T02-server_AL2BLANK
67FUGUE_KM_AL1BLANK
68SAM-T02-server_AL4BLANK
69FUGUE_KM_AL4BLANK
70SAM-T02-server_AL3BLANK
71FUGUE_KM_AL5BLANK
72FUGUE_KM_AL3BLANK
73SAM-T02-server_AL5BLANK

 

 

6. The ranking of TS methods by the sum of MaxSub scores of the best models (with highest MaxSub scores) out of five based on 107 targets:

RANKMethod NameSum of MaxSub Scores
1Zhang-Server60.3863
2QUARK60.0197
3BAKER-ROSETTASERVER57.9115
4MULTICOM-CLUSTER57.7143
5RaptorX57.6696
6RaptorX-MSA57.5248
7RaptorX-Boost57.427
8ZHOU-SPARKS-X56.6411
9MULTICOM-CONSTRUCT56.4987
10Pcomb56.4179
11chunk-TASSER56.0373
12MULTICOM-REFINE55.9782
13gws55.8661
14MULTICOM-NOVEL55.7952
15HHpredA55.7646
16HHpredB55.7646
17PconsR55.757
18Seok-server55.6016
19FAMSD55.5804
20HHpredC55.568
21Pcons55.5122
22ProQ255.3884
23pro-sp3-TASSER55.3791
24IntFOLD-TS55.2405
25GSmetaserver55.0766
26PconsM55.0671
27Phyre254.8029
28chuo-fams54.651
29CLEF-Server54.4846
30ProQ54.4146
31Jiang_THREADER54.3476
32circle54.1993
33Jiang_Assembly54.193
34Bilab-ENABLE54.1902
35ProfileCRF54.1121
36PconsD54.0843
37FALCON-SWIFT53.7565
38MUFOLD-Server53.6726
39prdos253.4868
40MUSTER53.3247
41SAM-T08-server53.1159
42SAM-T06-server53.1129
433D-JIGSAW_V4-552.3773
44PRECORS51.4359
45FFAS03n51.3608
46FFAS03a51.3301
473D-JIGSAW_V4-051.1772
48Distill51.0177
49FFAS0350.3994
50FFAS03ss50.0544
51Wolfson-serv50.0309
52Atome2_CBS49.8794
53MUFOLD-MD49.5971
54BioSerf48.7956
55MidwayFoldingServer48.0584
56LMUserver47.599
57panther44.1618
58Ma-OPUS-server43.9178
59MUSICS_server38.3139
60rehtnap36.5482
61Yang_kdd19.9863
62STAT-PROTEUS17.6397
63BHAGEERATH12.6125
64PLATO11.1939
65SAM-T02-server_AL10
66SAM-T02-server_AL20
67FUGUE_KM_AL10
68SAM-T02-server_AL40
69FUGUE_KM_AL40
70SAM-T02-server_AL30
71FUGUE_KM_AL50
72FUGUE_KM_AL30
73SAM-T02-server_AL50

 

 

If you have any comments or questions, you are welcome to contact Dr. Jianlin Cheng at chengji@missouri.edu or Zheng Wang at zwyw6@mizzou.edu.

Last modified on Nov 8 2010 2010.