The system is: Linux - 2.6.32-431.23.3.el6.x86_64 - x86_64 Compiling the C compiler identification source file "CMakeCCompilerId.c" succeeded. Compiler: /usr/bin/gcc Build flags: Id flags: The output was: 0 Compilation of the C compiler identification source "CMakeCCompilerId.c" produced "a.out" The C compiler identification is GNU, found in "/home/casp13/DNCON2/CCMpred/CMakeFiles/CompilerIdC/a.out" Compiling the CXX compiler identification source file "CMakeCXXCompilerId.cpp" succeeded. Compiler: /usr/bin/c++ Build flags: Id flags: The output was: 0 CMakeCXXCompilerId.cpp:79: warning: deprecated conversion from string constant to ‘char*’ CMakeCXXCompilerId.cpp:192: warning: deprecated conversion from string constant to ‘char*’ CMakeCXXCompilerId.cpp:193: warning: deprecated conversion from string constant to ‘char*’ Compilation of the CXX compiler identification source "CMakeCXXCompilerId.cpp" produced "a.out" The CXX compiler identification is GNU, found in "/home/casp13/DNCON2/CCMpred/CMakeFiles/CompilerIdCXX/a.out" Determining if the C compiler works passed with the following output: Change Dir: /home/casp13/DNCON2/CCMpred/CMakeFiles/CMakeTmp Run Build Command:/usr/bin/gmake "cmTryCompileExec/fast" /usr/bin/gmake -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/cmTryCompileExec.dir/build gmake[1]: Entering directory `/home/casp13/DNCON2/CCMpred/CMakeFiles/CMakeTmp' /home/jh7x3/Mocapy_tool/cmake-2.8.3/bin/cmake -E cmake_progress_report /home/casp13/DNCON2/CCMpred/CMakeFiles/CMakeTmp/CMakeFiles 1 Building C object CMakeFiles/cmTryCompileExec.dir/testCCompiler.c.o /usr/bin/gcc -o CMakeFiles/cmTryCompileExec.dir/testCCompiler.c.o -c /home/casp13/DNCON2/CCMpred/CMakeFiles/CMakeTmp/testCCompiler.c Linking C executable cmTryCompileExec /home/jh7x3/Mocapy_tool/cmake-2.8.3/bin/cmake -E cmake_link_script CMakeFiles/cmTryCompileExec.dir/link.txt --verbose=1 /usr/bin/gcc CMakeFiles/cmTryCompileExec.dir/testCCompiler.c.o -o cmTryCompileExec -rdynamic gmake[1]: Leaving directory `/home/casp13/DNCON2/CCMpred/CMakeFiles/CMakeTmp' Detecting C compiler ABI info compiled with the following output: Change Dir: /home/casp13/DNCON2/CCMpred/CMakeFiles/CMakeTmp Run Build Command:/usr/bin/gmake "cmTryCompileExec/fast" /usr/bin/gmake -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/cmTryCompileExec.dir/build gmake[1]: Entering directory `/home/casp13/DNCON2/CCMpred/CMakeFiles/CMakeTmp' /home/jh7x3/Mocapy_tool/cmake-2.8.3/bin/cmake -E cmake_progress_report /home/casp13/DNCON2/CCMpred/CMakeFiles/CMakeTmp/CMakeFiles 1 Building C object CMakeFiles/cmTryCompileExec.dir/CMakeCCompilerABI.c.o /usr/bin/gcc -o CMakeFiles/cmTryCompileExec.dir/CMakeCCompilerABI.c.o -c /home/jh7x3/Mocapy_tool/cmake-2.8.3/Modules/CMakeCCompilerABI.c Linking C executable cmTryCompileExec /home/jh7x3/Mocapy_tool/cmake-2.8.3/bin/cmake -E cmake_link_script CMakeFiles/cmTryCompileExec.dir/link.txt --verbose=1 /usr/bin/gcc -v CMakeFiles/cmTryCompileExec.dir/CMakeCCompilerABI.c.o -o cmTryCompileExec -rdynamic Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.7 20120313 (Red Hat 4.4.7-4) (GCC) COMPILER_PATH=/usr/libexec/gcc/x86_64-redhat-linux/4.4.7/:/usr/libexec/gcc/x86_64-redhat-linux/4.4.7/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.4.7/:/usr/lib/gcc/x86_64-redhat-linux/:/usr/libexec/gcc/x86_64-redhat-linux/4.4.7/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.4.7/:/usr/lib/gcc/x86_64-redhat-linux/ LIBRARY_PATH=/usr/lib/gcc/x86_64-redhat-linux/4.4.7/:/usr/lib/gcc/x86_64-redhat-linux/4.4.7/:/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-v' '-o' 'cmTryCompileExec' '-rdynamic' '-mtune=generic' /usr/libexec/gcc/x86_64-redhat-linux/4.4.7/collect2 --eh-frame-hdr --build-id -m elf_x86_64 --hash-style=gnu -export-dynamic -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o cmTryCompileExec /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. CMakeFiles/cmTryCompileExec.dir/CMakeCCompilerABI.c.o -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o gmake[1]: Leaving directory `/home/casp13/DNCON2/CCMpred/CMakeFiles/CMakeTmp' Parsed C implicit link information from above output: link line regex: [^( *|.*[/\])(ld|ld|collect2)[^/\]*( |$)] ignore line: [Change Dir: /home/casp13/DNCON2/CCMpred/CMakeFiles/CMakeTmp] ignore line: [] ignore line: [Run Build Command:/usr/bin/gmake "cmTryCompileExec/fast"] ignore line: [/usr/bin/gmake -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/cmTryCompileExec.dir/build] ignore line: [gmake[1]: Entering directory `/home/casp13/DNCON2/CCMpred/CMakeFiles/CMakeTmp'] ignore line: [/home/jh7x3/Mocapy_tool/cmake-2.8.3/bin/cmake -E cmake_progress_report /home/casp13/DNCON2/CCMpred/CMakeFiles/CMakeTmp/CMakeFiles 1] ignore line: [Building C object CMakeFiles/cmTryCompileExec.dir/CMakeCCompilerABI.c.o] ignore line: [/usr/bin/gcc -o CMakeFiles/cmTryCompileExec.dir/CMakeCCompilerABI.c.o -c /home/jh7x3/Mocapy_tool/cmake-2.8.3/Modules/CMakeCCompilerABI.c] ignore line: [Linking C executable cmTryCompileExec] ignore line: [/home/jh7x3/Mocapy_tool/cmake-2.8.3/bin/cmake -E cmake_link_script CMakeFiles/cmTryCompileExec.dir/link.txt --verbose=1] ignore line: [/usr/bin/gcc -v CMakeFiles/cmTryCompileExec.dir/CMakeCCompilerABI.c.o -o cmTryCompileExec -rdynamic ] ignore line: [Using built-in specs.] ignore line: [Target: x86_64-redhat-linux] ignore line: [Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux] ignore line: [Thread model: posix] ignore line: [gcc version 4.4.7 20120313 (Red Hat 4.4.7-4) (GCC) ] ignore line: [COMPILER_PATH=/usr/libexec/gcc/x86_64-redhat-linux/4.4.7/:/usr/libexec/gcc/x86_64-redhat-linux/4.4.7/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.4.7/:/usr/lib/gcc/x86_64-redhat-linux/:/usr/libexec/gcc/x86_64-redhat-linux/4.4.7/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.4.7/:/usr/lib/gcc/x86_64-redhat-linux/] ignore line: [LIBRARY_PATH=/usr/lib/gcc/x86_64-redhat-linux/4.4.7/:/usr/lib/gcc/x86_64-redhat-linux/4.4.7/:/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../:/lib/:/usr/lib/] ignore line: [COLLECT_GCC_OPTIONS='-v' '-o' 'cmTryCompileExec' '-rdynamic' '-mtune=generic'] link line: [ /usr/libexec/gcc/x86_64-redhat-linux/4.4.7/collect2 --eh-frame-hdr --build-id -m elf_x86_64 --hash-style=gnu -export-dynamic -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o cmTryCompileExec /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. 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Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.7 20120313 (Red Hat 4.4.7-4) (GCC) COMPILER_PATH=/usr/libexec/gcc/x86_64-redhat-linux/4.4.7/:/usr/libexec/gcc/x86_64-redhat-linux/4.4.7/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.4.7/:/usr/lib/gcc/x86_64-redhat-linux/:/usr/libexec/gcc/x86_64-redhat-linux/4.4.7/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.4.7/:/usr/lib/gcc/x86_64-redhat-linux/ LIBRARY_PATH=/usr/lib/gcc/x86_64-redhat-linux/4.4.7/:/usr/lib/gcc/x86_64-redhat-linux/4.4.7/:/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-v' '-o' 'cmTryCompileExec' '-rdynamic' '-shared-libgcc' '-mtune=generic' /usr/libexec/gcc/x86_64-redhat-linux/4.4.7/collect2 --eh-frame-hdr --build-id -m elf_x86_64 --hash-style=gnu -export-dynamic -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o cmTryCompileExec /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. 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