Search results will be written to 3e7u.hhr Reading in 8290068 column state sequences with a total of 1874100330 residues Iteration 1 Prefiltering database ................................................................................... HMMs passed 1st prefilter (gapless profile-profile alignment) : 30009 HMMs passed 2nd prefilter (gapped profile-profile alignment) : 30 HMMs passed 2nd prefilter and not found in previous iterations : 30 Scoring 30 HMMs using HMM-HMM Viterbi alignment . Realigning 27 HMMs using HMM-HMM Maximum Accuracy algorithm ... Merging hits to query profile 14 sequences belonging to 14 database HMMs found with an E-value < 0.001 Number of effective sequences of resulting query HMM: Neff = 3.15 Iteration 2 Prefiltering database ................................................................................... HMMs passed 1st prefilter (gapless profile-profile alignment) : 16513 HMMs passed 2nd prefilter (gapped profile-profile alignment) : 28 HMMs passed 2nd prefilter and not found in previous iterations : 28 Scoring 28 HMMs using HMM-HMM Viterbi alignment . Realigning 28 HMMs using HMM-HMM Maximum Accuracy algorithm .. Merging hits to query profile 23 sequences belonging to 23 database HMMs found with an E-value < 0.001 Number of effective sequences of resulting query HMM: Neff = 3.98 Iteration 3 Prefiltering database ................................................................................... HMMs passed 1st prefilter (gapless profile-profile alignment) : 18943 HMMs passed 2nd prefilter (gapped profile-profile alignment) : 55 HMMs passed 2nd prefilter and not found in previous iterations : 55 Scoring 55 HMMs using HMM-HMM Viterbi alignment .. Rescoring previously found HMMs with Viterbi algorithm . Realigning 55 HMMs using HMM-HMM Maximum Accuracy algorithm ....... Merging hits to query profile 43 sequences belonging to 43 database HMMs found with an E-value < 0.001 Number of effective sequences of resulting query HMM: Neff = 4.37 Query 3e7u Match_columns 40 No_of_seqs 136 out of 143 Neff 4.0 Searched_HMMs 78 Date Tue May 7 15:49:00 2019 Command /data/jh7x3/multicom_github/multicom/tools/DNCON2/hhsuite-2.0.16-linux-x86_64/bin/hhblits -i 3e7u.fasta -d /data/jh7x3/multicom_github/multicom/databases/hhsuite3_dbs/uniprot20_2016_02/uniprot20_2016_02 -oa3m hhb-cov60.a3m -cpu 2 -n 3 -maxfilt 500000 -diff inf -e 0.001 -id 99 -cov 60 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 tr|G3MQE3|G3MQE3_9ACAR Putativ 99.7 2.7E-21 1.6E-26 111.7 0.0 35 1-40 36-71 (72) 2 tr|G3MQE3|G3MQE3_9ACAR Putativ 99.7 2.7E-21 1.6E-26 111.7 0.0 35 1-40 36-71 (72) 3 sp|P81610|DEFA_MYTED Defensin- 99.7 4.1E-20 2E-25 96.3 0.0 35 1-40 1-36 (37) 4 sp|P81610|DEFA_MYTED Defensin- 99.7 4.1E-20 2.1E-25 96.3 0.0 35 1-40 1-36 (37) 5 tr|G3MHR5|G3MHR5_9ACAR Putativ 99.6 7.3E-19 3.3E-24 106.6 0.0 35 1-40 63-98 (100) 6 tr|G3MHR5|G3MHR5_9ACAR Putativ 99.6 7.5E-19 3.4E-24 106.6 0.0 35 1-40 63-98 (100) 7 tr|B7PQR1|B7PQR1_IXOSC Scapula 99.6 2E-18 9.2E-24 104.8 0.0 35 1-40 64-99 (101) 8 tr|B7PQR1|B7PQR1_IXOSC Scapula 99.6 2.1E-18 9.3E-24 104.8 0.0 35 1-40 64-99 (101) 9 tr|A0A0H1BJF3|A0A0H1BJF3_9EURO 99.5 5.1E-18 2.5E-23 105.3 0.0 38 1-40 79-116 (116) 10 tr|A0A0H1BJF3|A0A0H1BJF3_9EURO 99.5 5.4E-18 2.7E-23 105.3 0.0 38 1-40 79-116 (116) 11 tr|J7FYY5|J7FYY5_RUDPH Defensi 99.5 4.9E-18 2.8E-23 98.5 0.0 36 1-40 24-61 (72) 12 tr|J7FYY5|J7FYY5_RUDPH Defensi 99.5 5.4E-18 2.9E-23 98.5 0.0 36 1-40 24-61 (72) 13 tr|G3MPF6|G3MPF6_9ACAR Putativ 99.5 3.4E-17 1.5E-22 99.4 0.0 35 1-40 63-98 (100) 14 tr|G3MPF6|G3MPF6_9ACAR Putativ 99.5 3.4E-17 1.5E-22 99.4 0.0 35 1-40 63-98 (100) 15 tr|M4NCH1|M4NCH1_CRIPL Defensi 99.5 8.1E-17 4.1E-22 91.9 0.0 35 1-40 25-62 (63) 16 tr|M4NCH1|M4NCH1_CRIPL Defensi 99.5 7.9E-17 4.2E-22 91.9 0.0 35 1-40 25-62 (63) 17 tr|A0A059J5P2|A0A059J5P2_9EURO 99.4 1.4E-16 7.3E-22 95.0 0.0 34 1-39 48-82 (85) 18 tr|A0A059J5P2|A0A059J5P2_9EURO 99.4 1.4E-16 7.5E-22 95.0 0.0 34 1-39 48-82 (85) 19 sp|P80571|DEFI_MYTGA Defensin 99.4 1E-15 4.6E-21 86.5 0.0 35 1-40 1-36 (60) 20 sp|P80571|DEFI_MYTGA Defensin 99.4 1E-15 4.6E-21 86.5 0.0 35 1-40 1-36 (60) 21 tr|U1QAH3|U1QAH3_9ACTO Arthrop 99.3 1.5E-15 7.5E-21 87.7 0.0 34 1-40 33-67 (67) 22 tr|U1QAH3|U1QAH3_9ACTO Arthrop 99.3 1.4E-15 7.6E-21 87.7 0.0 34 1-40 33-67 (67) 23 tr|Q5QFI4|Q5QFI4_IXORI Defensi 99.3 7.4E-15 3.3E-20 70.5 0.0 23 3-30 1-23 (23) 24 tr|Q5QFI4|Q5QFI4_IXORI Defensi 99.3 7.5E-15 3.4E-20 70.5 0.0 23 3-30 1-23 (23) 25 tr|N6THI6|N6THI6_DENPD Unchara 99.1 1.3E-13 7.8E-19 82.1 0.0 30 8-39 53-82 (84) 26 tr|N6THI6|N6THI6_DENPD Unchara 99.1 1.3E-13 7.8E-19 82.1 0.0 30 8-39 53-82 (84) 27 sp|P80033|DEFA_ZOPAT Defensin, 99.1 2.7E-13 1.3E-18 73.2 0.0 30 8-39 13-42 (43) 28 sp|P80033|DEFA_ZOPAT Defensin, 99.1 2.7E-13 1.3E-18 73.2 0.0 30 8-39 13-42 (43) 29 tr|T1I7B4|T1I7B4_RHOPR Unchara 98.7 4E-11 2.5E-16 72.7 0.0 29 8-39 64-92 (94) 30 tr|A0A084G2W8|A0A084G2W8_9PEZI 98.7 9.5E-11 4.3E-16 74.5 0.0 29 1-33 53-81 (129) 31 tr|A0A084G2W8|A0A084G2W8_9PEZI 98.7 9.5E-11 4.3E-16 74.5 0.0 29 1-33 53-81 (129) 32 tr|A6RCG3|A6RCG3_AJECN Predict 98.4 1E-09 4.5E-15 70.9 0.0 31 1-32 79-109 (143) 33 tr|A6RCG3|A6RCG3_AJECN Predict 98.4 1E-09 4.5E-15 70.9 0.0 31 1-32 79-109 (143) 34 tr|B9TXR3|B9TXR3_9HYME Defensi 98.3 3.6E-09 1.8E-14 64.5 0.0 30 8-39 57-86 (88) 35 tr|C0NM15|C0NM15_AJECG Putativ 98.2 6.4E-09 2.8E-14 70.1 0.0 31 1-32 143-173 (203) 36 tr|C0NM15|C0NM15_AJECG Putativ 98.2 6.4E-09 2.8E-14 70.1 0.0 31 1-32 143-173 (203) 37 tr|Q6H9L9|Q6H9L9_CRAGI Gigasin 98.2 6.5E-09 2.9E-14 57.0 0.0 23 1-28 23-45 (45) 38 tr|Q6H9L9|Q6H9L9_CRAGI Gigasin 98.2 6.5E-09 2.9E-14 57.0 0.0 23 1-28 23-45 (45) 39 tr|B3RFK4|B3RFK4_9DIPT Defensi 98.2 1.2E-08 5.6E-14 59.0 0.0 30 8-39 30-59 (62) 40 sp|P80407|DEFI_PALPR Defensin 98.0 3.1E-08 1.5E-13 54.1 0.0 29 8-39 13-41 (43) 41 tr|A0A0K8VKU3|A0A0K8VKU3_BACLA 98.0 5E-08 2.4E-13 62.2 0.0 30 8-39 89-118 (120) 42 tr|E2BDP6|E2BDP6_HARSA Putativ 98.0 5.4E-08 2.5E-13 55.3 0.0 29 8-39 24-52 (54) 43 tr|B7QGE4|B7QGE4_IXOSC Defensi 97.9 8.3E-08 3.7E-13 56.8 0.0 36 1-40 35-71 (71) 44 tr|B7QGE4|B7QGE4_IXOSC Defensi 97.9 8.3E-08 3.7E-13 56.8 0.0 36 1-40 35-71 (71) 45 tr|E0W2M5|E0W2M5_PEDHC Defensi 97.9 1E-07 5.1E-13 60.5 0.0 29 8-39 81-111 (113) 46 tr|A0A0K8L7T6|A0A0K8L7T6_9EURO 97.8 2.4E-07 1.1E-12 61.8 0.0 29 1-33 54-83 (174) 47 tr|A0A0K8L7T6|A0A0K8L7T6_9EURO 97.8 2.4E-07 1.1E-12 61.8 0.0 29 1-33 54-83 (174) 48 tr|B7QIW0|B7QIW0_IXOSC Putativ 97.8 2.6E-07 1.2E-12 54.9 0.0 34 1-39 32-67 (71) 49 tr|B7QIW0|B7QIW0_IXOSC Putativ 97.8 2.6E-07 1.3E-12 54.9 0.0 34 1-39 32-67 (71) 50 tr|E2AKI0|E2AKI0_CAMFO Putativ 97.7 3.1E-07 1.4E-12 53.3 0.0 28 9-39 32-59 (61) 51 tr|D6WVN3|D6WVN3_TRICA Putativ 97.7 3.7E-07 1.7E-12 58.9 0.0 30 8-39 101-130 (132) 52 sp|P0CF77|DEF_TITDI Tddefensin 97.7 4.6E-07 2.1E-12 48.1 0.0 32 4-40 3-35 (36) 53 sp|P0CF77|DEF_TITDI Tddefensin 97.7 4.6E-07 2.1E-12 48.1 0.0 32 4-40 3-35 (36) 54 tr|A0A034WWA1|A0A034WWA1_BACDO 97.6 5.1E-07 2.8E-12 58.3 0.0 27 12-40 101-128 (128) 55 tr|K1Q8B1|K1Q8B1_CRAGI Unchara 97.6 8.1E-07 3.6E-12 64.9 0.0 33 1-39 44-76 (415) 56 tr|K1Q8B1|K1Q8B1_CRAGI Unchara 97.6 8.1E-07 3.6E-12 64.9 0.0 33 1-39 44-76 (415) 57 tr|A0A0M9A1F6|A0A0M9A1F6_9HYME 97.5 1.3E-06 6.3E-12 52.1 0.0 29 8-39 42-70 (72) 58 tr|I2HB38|I2HB38_HARSA Defensi 97.3 4.4E-06 2E-11 50.4 0.0 29 8-39 47-75 (77) 59 tr|A0A026WVD4|A0A026WVD4_CERBI 97.2 6.6E-06 2.9E-11 51.0 0.0 29 8-39 63-91 (93) 60 sp|P81462|DEFI_BOMPA Defensin 97.0 1.9E-05 8.3E-11 44.9 0.0 26 11-39 13-38 (51) 61 tr|R4G4L8|R4G4L8_RHOPR Putativ 96.9 4.4E-05 2E-10 49.6 0.0 29 8-39 94-122 (124) 62 sp|A9QLM3|KA11L_LYCMC Toxin KT 96.5 0.00018 8.4E-10 42.8 0.0 33 3-39 30-63 (65) 63 tr|G0MWM7|G0MWM7_CAEBE Putativ 96.5 0.00019 8.5E-10 45.7 0.0 37 2-39 61-98 (106) 64 tr|E9IDN0|E9IDN0_SOLIN Putativ 96.4 0.00028 1.2E-09 45.7 0.0 30 8-39 88-117 (119) 65 tr|C3YS52|C3YS52_BRAFL Putativ 96.4 0.00029 1.3E-09 47.7 0.0 23 10-33 79-101 (169) 66 tr|A0A0A9XAY7|A0A0A9XAY7_LYGHE 96.3 0.00034 1.6E-09 45.6 0.0 28 9-39 93-120 (122) 67 tr|E2BT13|E2BT13_HARSA Royalis 96.0 0.0011 4.8E-09 36.4 0.0 22 4-30 18-39 (39) 68 tr|C3Z4F2|C3Z4F2_BRAFL Putativ 95.8 0.0017 7.5E-09 41.8 0.0 32 7-39 76-108 (109) 69 tr|A0A072U0T0|A0A072U0T0_MEDTR 95.5 0.0036 1.6E-08 34.1 0.0 32 3-39 3-35 (37) 70 tr|M1D0T0|M1D0T0_SOLTU Unchara 95.2 0.0042 2.9E-08 35.6 0.0 29 11-40 27-55 (58) 71 tr|B2BA88|B2BA88_LILLO LLA-144 94.7 0.013 6.1E-08 32.2 0.0 27 12-39 7-33 (37) 72 tr|V5LF08|V5LF08_CITLA Defensi 94.3 0.019 1E-07 35.3 0.0 28 11-39 43-70 (75) 73 tr|A0A072TLP4|A0A072TLP4_MEDTR 94.0 0.026 1.4E-07 34.4 0.0 31 10-40 37-67 (70) 74 tr|A0A0E0DB27|A0A0E0DB27_9ORYZ 91.9 0.16 7.1E-07 35.7 0.0 26 13-39 153-178 (182) 75 tr|D0N3K2|D0N3K2_PHYIT Putativ 80.7 2.9 1.3E-05 28.1 0.0 20 3-22 65-84 (111) 76 tr|Q9XHE3|Q9XHE3_CAPCH Putativ 77.4 3.4 2E-05 27.4 0.0 30 10-39 42-71 (107) 77 tr|G5A1R4|G5A1R4_PHYSP Putativ 74.6 5.9 2.6E-05 27.8 0.0 20 3-22 105-124 (148) 78 tr|A0A0P4VSM3|A0A0P4VSM3_9HEMI 64.7 14 6.2E-05 24.5 0.0 30 8-39 55-84 (94) Writing A3M alignment to hhb-cov60.a3m Done