PSIBLAST 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.



Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: nr90
           38,209,907 sequences; 13,267,535,841 total letters

Results from round 1


Query= 3e7u

Length=40
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

sp|Q53I06|PLECT_PSENR  RecName: Full=Plectasin; Flags: Precursor ...  60.8    2e-07
emb|CCX33672.1|  Similar to Plectasin; acc. no. Q53I06 [Pyronema ...  60.1    3e-07
emb|CCX33671.1|  Similar to Plectasin; acc. no. Q53I06 [Pyronema ...  59.7    4e-07
emb|CCX33670.1|  Similar to Plectasin; acc. no. Q53I06 [Pyronema ...  59.7    4e-07
emb|CCX33668.1|  Similar to Plectasin; acc. no. Q53I06 [Pyronema ...  57.8    2e-06


>sp|Q53I06|PLECT_PSENR RecName: Full=Plectasin; Flags: Precursor
 emb|CAI83768.1| defensin [Pseudoplectania nigrella]
Length=95

 Score = 60.8 bits (146),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 40/40 (100%), Positives = 40/40 (100%), Gaps = 0/40 (0%)

Query  1   GFGCNGPWDEDDMQCHNHCKSIKGYKGGYCAKGGFVCKCY  40
           GFGCNGPWDEDDMQCHNHCKSIKGYKGGYCAKGGFVCKCY
Sbjct  56  GFGCNGPWDEDDMQCHNHCKSIKGYKGGYCAKGGFVCKCY  95


>emb|CCX33672.1| Similar to Plectasin; acc. no. Q53I06 [Pyronema omphalodes CBS 
100304]
Length=92

 Score = 60.1 bits (144),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 37/40 (93%), Positives = 38/40 (95%), Gaps = 0/40 (0%)

Query  1   GFGCNGPWDEDDMQCHNHCKSIKGYKGGYCAKGGFVCKCY  40
           GFGCNGPWDEDDM+CHNHCKSIKGYKGGYCA  GFVCKCY
Sbjct  53  GFGCNGPWDEDDMKCHNHCKSIKGYKGGYCASAGFVCKCY  92


>emb|CCX33671.1| Similar to Plectasin; acc. no. Q53I06 [Pyronema omphalodes CBS 
100304]
Length=95

 Score = 59.7 bits (143),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 38/40 (95%), Positives = 39/40 (98%), Gaps = 0/40 (0%)

Query  1   GFGCNGPWDEDDMQCHNHCKSIKGYKGGYCAKGGFVCKCY  40
           GFGCNGPWDEDDM+CHNHCKSIKGYKGGYCAK GFVCKCY
Sbjct  56  GFGCNGPWDEDDMKCHNHCKSIKGYKGGYCAKAGFVCKCY  95


>emb|CCX33670.1| Similar to Plectasin; acc. no. Q53I06 [Pyronema omphalodes CBS 
100304]
Length=95

 Score = 59.7 bits (143),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 38/40 (95%), Gaps = 0/40 (0%)

Query  1   GFGCNGPWDEDDMQCHNHCKSIKGYKGGYCAKGGFVCKCY  40
           GFGCNGPWDEDDM+CHNHCK+IKGYKGGYCA  GFVCKCY
Sbjct  56  GFGCNGPWDEDDMKCHNHCKTIKGYKGGYCASAGFVCKCY  95


>emb|CCX33668.1| Similar to Plectasin; acc. no. Q53I06 [Pyronema omphalodes CBS 
100304]
Length=94

 Score = 57.8 bits (138),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 37/40 (93%), Gaps = 0/40 (0%)

Query  1   GFGCNGPWDEDDMQCHNHCKSIKGYKGGYCAKGGFVCKCY  40
           GFGC GPW+EDDMQCHNHCKSIKGYKGGYCA  GFVCKCY
Sbjct  55  GFGCGGPWNEDDMQCHNHCKSIKGYKGGYCASAGFVCKCY  94



Lambda     K      H
   0.329    0.148    0.617 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 331047525718
Results from round 2


Query= 3e7u

Length=40
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value
Sequences used in model and found again:

emb|CCX33671.1|  Similar to Plectasin; acc. no. Q53I06 [Pyronema ...  54.8    9e-06
emb|CCX33670.1|  Similar to Plectasin; acc. no. Q53I06 [Pyronema ...  53.7    2e-05
sp|Q53I06|PLECT_PSENR  RecName: Full=Plectasin; Flags: Precursor ...  53.7    2e-05
emb|CCX33672.1|  Similar to Plectasin; acc. no. Q53I06 [Pyronema ...  53.7    2e-05
emb|CCX33668.1|  Similar to Plectasin; acc. no. Q53I06 [Pyronema ...  52.9    4e-05

Sequences not found previously or not previously below threshold:



>emb|CCX33671.1| Similar to Plectasin; acc. no. Q53I06 [Pyronema omphalodes CBS 
100304]
Length=95

 Score = 54.8 bits (131),  Expect = 9e-06, Method: Composition-based stats.
 Identities = 38/40 (95%), Positives = 39/40 (98%), Gaps = 0/40 (0%)

Query  1   GFGCNGPWDEDDMQCHNHCKSIKGYKGGYCAKGGFVCKCY  40
           GFGCNGPWDEDDM+CHNHCKSIKGYKGGYCAK GFVCKCY
Sbjct  56  GFGCNGPWDEDDMKCHNHCKSIKGYKGGYCAKAGFVCKCY  95


>emb|CCX33670.1| Similar to Plectasin; acc. no. Q53I06 [Pyronema omphalodes CBS 
100304]
Length=95

 Score = 53.7 bits (128),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 36/40 (90%), Positives = 38/40 (95%), Gaps = 0/40 (0%)

Query  1   GFGCNGPWDEDDMQCHNHCKSIKGYKGGYCAKGGFVCKCY  40
           GFGCNGPWDEDDM+CHNHCK+IKGYKGGYCA  GFVCKCY
Sbjct  56  GFGCNGPWDEDDMKCHNHCKTIKGYKGGYCASAGFVCKCY  95


>sp|Q53I06|PLECT_PSENR RecName: Full=Plectasin; Flags: Precursor
 emb|CAI83768.1| defensin [Pseudoplectania nigrella]
Length=95

 Score = 53.7 bits (128),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 40/40 (100%), Positives = 40/40 (100%), Gaps = 0/40 (0%)

Query  1   GFGCNGPWDEDDMQCHNHCKSIKGYKGGYCAKGGFVCKCY  40
           GFGCNGPWDEDDMQCHNHCKSIKGYKGGYCAKGGFVCKCY
Sbjct  56  GFGCNGPWDEDDMQCHNHCKSIKGYKGGYCAKGGFVCKCY  95


>emb|CCX33672.1| Similar to Plectasin; acc. no. Q53I06 [Pyronema omphalodes CBS 
100304]
Length=92

 Score = 53.7 bits (128),  Expect = 2e-05, Method: Composition-based stats.
 Identities = 37/40 (93%), Positives = 38/40 (95%), Gaps = 0/40 (0%)

Query  1   GFGCNGPWDEDDMQCHNHCKSIKGYKGGYCAKGGFVCKCY  40
           GFGCNGPWDEDDM+CHNHCKSIKGYKGGYCA  GFVCKCY
Sbjct  53  GFGCNGPWDEDDMKCHNHCKSIKGYKGGYCASAGFVCKCY  92


>emb|CCX33668.1| Similar to Plectasin; acc. no. Q53I06 [Pyronema omphalodes CBS 
100304]
Length=94

 Score = 52.9 bits (126),  Expect = 4e-05, Method: Composition-based stats.
 Identities = 36/40 (90%), Positives = 37/40 (93%), Gaps = 0/40 (0%)

Query  1   GFGCNGPWDEDDMQCHNHCKSIKGYKGGYCAKGGFVCKCY  40
           GFGC GPW+EDDMQCHNHCKSIKGYKGGYCA  GFVCKCY
Sbjct  55  GFGCGGPWNEDDMQCHNHCKSIKGYKGGYCASAGFVCKCY  94



Lambda     K      H
   0.329    0.156    0.665 

Gapped
Lambda     K      H
   0.267   0.0473    0.140 

Effective search space used: 331047525718

Search has CONVERGED!


  Database: nr90
    Posted date:  Apr 26, 2016 10:28 PM
  Number of letters in database: 13,267,535,841
  Number of sequences in database:  38,209,907



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40