This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by freecontact configure 1.0.21, which was
generated by GNU Autoconf 2.63.  Invocation command line was

  $ ./configure --prefix=/home/casp14/DeepRank_db_tools//tools/DNCON2/freecontact-1.0.21 LDFLAGS=-L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib CFLAGS=-I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 CPPFLAGS=-I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 --with-boost=/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/

## --------- ##
## Platform. ##
## --------- ##

hostname = sunflower.rnet.missouri.edu
uname -m = x86_64
uname -r = 2.6.32-754.25.1.el6.x86_64
uname -s = Linux
uname -v = #1 SMP Mon Dec 23 15:19:53 UTC 2019

/usr/bin/uname -p = unknown
/bin/uname -X     = unknown

/bin/arch              = x86_64
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /home/shawnchen/anaconda3/bin
PATH: /home/shawnchen/anaconda3/condabin
PATH: /usr/lib64/qt-3.3/bin
PATH: /home/casp13/hhsuite-3.0/cmake-3.10.2-Linux-x86_64/bin
PATH: /home/casp13/hhsuite3/bin
PATH: /home/casp13/hhsuite3/scripts
PATH: /usr/local/bin
PATH: /bin
PATH: /usr/bin
PATH: /usr/local/sbin
PATH: /usr/sbin
PATH: /sbin
PATH: /opt/dell/srvadmin/bin
PATH: /home/shawnchen/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2114: checking for a BSD-compatible install
configure:2182: result: /usr/bin/install -c
configure:2193: checking whether build environment is sane
configure:2253: result: yes
configure:2394: checking for a thread-safe mkdir -p
configure:2433: result: /bin/mkdir -p
configure:2446: checking for gawk
configure:2462: found /bin/gawk
configure:2473: result: gawk
configure:2484: checking whether make sets $(MAKE)
configure:2506: result: yes
configure:2647: checking for g++
configure:2663: found /usr/bin/g++
configure:2674: result: g++
configure:2701: checking for C++ compiler version
configure:2709: g++ --version >&5
g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:2713: $? = 0
configure:2720: g++ -v >&5
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.7 20120313 (Red Hat 4.4.7-23) (GCC) 
configure:2724: $? = 0
configure:2731: g++ -V >&5
g++: '-V' option must have argument
configure:2735: $? = 1
configure:2758: checking for C++ compiler default output file name
configure:2780: g++  -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.cpp  >&5
configure:2784: $? = 0
configure:2822: result: a.out
configure:2841: checking whether the C++ compiler works
configure:2851: ./a.out
configure:2855: $? = 0
configure:2874: result: yes
configure:2881: checking whether we are cross compiling
configure:2883: result: no
configure:2886: checking for suffix of executables
configure:2893: g++ -o conftest  -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.cpp  >&5
configure:2897: $? = 0
configure:2923: result: 
configure:2929: checking for suffix of object files
configure:2955: g++ -c  -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.cpp >&5
configure:2959: $? = 0
configure:2984: result: o
configure:2988: checking whether we are using the GNU C++ compiler
configure:3017: g++ -c  -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.cpp >&5
configure:3024: $? = 0
configure:3041: result: yes
configure:3050: checking whether g++ accepts -g
configure:3080: g++ -c -g -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.cpp >&5
configure:3087: $? = 0
configure:3188: result: yes
configure:3222: checking for style of include used by make
configure:3250: result: GNU
configure:3275: checking dependency style of g++
configure:3385: result: gcc3
configure:3454: checking for g77
configure:3484: result: no
configure:3454: checking for xlf
configure:3484: result: no
configure:3454: checking for f77
configure:3484: result: no
configure:3454: checking for frt
configure:3484: result: no
configure:3454: checking for pgf77
configure:3484: result: no
configure:3454: checking for cf77
configure:3484: result: no
configure:3454: checking for fort77
configure:3484: result: no
configure:3454: checking for fl32
configure:3484: result: no
configure:3454: checking for af77
configure:3484: result: no
configure:3454: checking for xlf90
configure:3484: result: no
configure:3454: checking for f90
configure:3484: result: no
configure:3454: checking for pgf90
configure:3484: result: no
configure:3454: checking for pghpf
configure:3484: result: no
configure:3454: checking for epcf90
configure:3484: result: no
configure:3454: checking for gfortran
configure:3470: found /usr/bin/gfortran
configure:3481: result: gfortran
configure:3507: checking for Fortran 77 compiler version
configure:3515: gfortran --version >&5
GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
Copyright (C) 2010 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:3519: $? = 0
configure:3526: gfortran -v >&5
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.7 20120313 (Red Hat 4.4.7-23) (GCC) 
configure:3530: $? = 0
configure:3537: gfortran -V >&5
gfortran: '-V' option must have argument
configure:3541: $? = 1
configure:3549: checking whether we are using the GNU Fortran 77 compiler
configure:3568: gfortran -c  conftest.F >&5
configure:3575: $? = 0
configure:3592: result: yes
configure:3598: checking whether gfortran accepts -g
configure:3615: gfortran -c -g conftest.f >&5
configure:3622: $? = 0
configure:3638: result: yes
configure:3720: checking for gfortran
configure:3736: found /usr/bin/gfortran
configure:3747: result: gfortran
configure:3773: checking for Fortran compiler version
configure:3781: gfortran --version >&5
GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
Copyright (C) 2010 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:3785: $? = 0
configure:3792: gfortran -v >&5
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.7 20120313 (Red Hat 4.4.7-23) (GCC) 
configure:3796: $? = 0
configure:3803: gfortran -V >&5
gfortran: '-V' option must have argument
configure:3807: $? = 1
configure:3815: checking whether we are using the GNU Fortran compiler
configure:3834: gfortran -c   conftest.F >&5
configure:3841: $? = 0
configure:3858: result: yes
configure:3864: checking whether gfortran accepts -g
configure:3881: gfortran -c -g  conftest.f >&5
configure:3888: $? = 0
configure:3904: result: yes
configure:3933: checking how to get verbose linking output from gfortran
configure:3949: gfortran -c -g -O2  conftest.f >&5
configure:3956: $? = 0
configure:3978: gfortran -o conftest -g -O2 -v -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.f
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.7 20120313 (Red Hat 4.4.7-23) (GCC) 
 /usr/libexec/gcc/x86_64-redhat-linux/4.4.7/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -auxbase conftest -g -O2 -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-redhat-linux/4.4.7/finclude -o /tmp/cc00AatZ.s
GNU Fortran (GCC) version 4.4.7 20120313 (Red Hat 4.4.7-23) (x86_64-redhat-linux)
	compiled by GNU C version 4.4.7 20120313 (Red Hat 4.4.7-23), GMP version 4.3.1, MPFR version 2.4.1.
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
 as -V -Qy -o /tmp/cc3Z6SIE.o /tmp/cc00AatZ.s
GNU assembler version 2.20.51.0.2 (x86_64-redhat-linux) using BFD version version 2.20.51.0.2-5.48.el6_10.1 20100205
 /usr/libexec/gcc/x86_64-redhat-linux/4.4.7/collect2 --eh-frame-hdr --build-id -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. /tmp/cc3Z6SIE.o -lgfortranbegin -lgfortran -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o
configure:4047: result: -v
configure:4049: checking for Fortran libraries of gfortran
configure:4072: gfortran -o conftest -g -O2 -v -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.f
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.7 20120313 (Red Hat 4.4.7-23) (GCC) 
 /usr/libexec/gcc/x86_64-redhat-linux/4.4.7/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -auxbase conftest -g -O2 -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-redhat-linux/4.4.7/finclude -o /tmp/ccEkZl86.s
GNU Fortran (GCC) version 4.4.7 20120313 (Red Hat 4.4.7-23) (x86_64-redhat-linux)
	compiled by GNU C version 4.4.7 20120313 (Red Hat 4.4.7-23), GMP version 4.3.1, MPFR version 2.4.1.
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
 as -V -Qy -o /tmp/ccPB11EM.o /tmp/ccEkZl86.s
GNU assembler version 2.20.51.0.2 (x86_64-redhat-linux) using BFD version version 2.20.51.0.2-5.48.el6_10.1 20100205
 /usr/libexec/gcc/x86_64-redhat-linux/4.4.7/collect2 --eh-frame-hdr --build-id -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. /tmp/ccPB11EM.o -lgfortranbegin -lgfortran -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o
configure:4249: result:  -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. -lgfortranbegin -lgfortran -lm
configure:4291: checking build system type
configure:4309: result: x86_64-unknown-linux-gnu
configure:4331: checking host system type
configure:4346: result: x86_64-unknown-linux-gnu
configure:4389: checking how to print strings
configure:4416: result: printf
configure:4485: checking for gcc
configure:4501: found /usr/bin/gcc
configure:4512: result: gcc
configure:4744: checking for C compiler version
configure:4752: gcc --version >&5
gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:4756: $? = 0
configure:4763: gcc -v >&5
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.7 20120313 (Red Hat 4.4.7-23) (GCC) 
configure:4767: $? = 0
configure:4774: gcc -V >&5
gcc: '-V' option must have argument
configure:4778: $? = 1
configure:4781: checking whether we are using the GNU C compiler
configure:4810: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:4817: $? = 0
configure:4834: result: yes
configure:4843: checking whether gcc accepts -g
configure:4873: gcc -c -g -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:4880: $? = 0
configure:4981: result: yes
configure:4998: checking for gcc option to accept ISO C89
configure:5072: gcc  -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:5079: $? = 0
configure:5102: result: none needed
configure:5122: checking dependency style of gcc
configure:5232: result: gcc3
configure:5247: checking for a sed that does not truncate output
configure:5313: result: /bin/sed
configure:5331: checking for grep that handles long lines and -e
configure:5391: result: /bin/grep
configure:5396: checking for egrep
configure:5460: result: /bin/grep -E
configure:5465: checking for fgrep
configure:5529: result: /bin/grep -F
configure:5564: checking for ld used by gcc
configure:5631: result: /usr/bin/ld
configure:5640: checking if the linker (/usr/bin/ld) is GNU ld
configure:5655: result: yes
configure:5667: checking for BSD- or MS-compatible name lister (nm)
configure:5721: result: /usr/bin/nm -B
configure:5851: checking the name lister (/usr/bin/nm -B) interface
configure:5858: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:5861: /usr/bin/nm -B "conftest.o"
configure:5864: output
0000000000000000 B some_variable
configure:5871: result: BSD nm
configure:5874: checking whether ln -s works
configure:5878: result: yes
configure:5886: checking the maximum length of command line arguments
configure:6017: result: 1966080
configure:6065: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format
configure:6105: result: func_convert_file_noop
configure:6112: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format
configure:6132: result: func_convert_file_noop
configure:6139: checking for /usr/bin/ld option to reload object files
configure:6146: result: -r
configure:6220: checking for objdump
configure:6236: found /usr/bin/objdump
configure:6247: result: objdump
configure:6279: checking how to recognize dependent libraries
configure:6479: result: pass_all
configure:6564: checking for dlltool
configure:6594: result: no
configure:6624: checking how to associate runtime and link libraries
configure:6651: result: printf %s\n
configure:6712: checking for ar
configure:6728: found /usr/bin/ar
configure:6739: result: ar
configure:6776: checking for archiver @FILE support
configure:6803: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:6810: $? = 0
configure:6817: ar cru libconftest.a @conftest.lst >&5
configure:6820: $? = 0
configure:6825: ar cru libconftest.a @conftest.lst >&5
ar: conftest.o: No such file or directory
configure:6828: $? = 1
configure:6846: result: @
configure:6904: checking for strip
configure:6920: found /usr/bin/strip
configure:6931: result: strip
configure:7003: checking for ranlib
configure:7019: found /usr/bin/ranlib
configure:7030: result: ranlib
configure:7132: checking command to parse /usr/bin/nm -B output from gcc object
configure:7285: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:7288: $? = 0
configure:7292: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:7295: $? = 0
configure:7361: gcc -o conftest -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.c conftstm.o >&5
configure:7364: $? = 0
configure:7402: result: ok
configure:7449: checking for sysroot
configure:7481: result: no
configure:7488: checking for a working dd
configure:7526: result: /bin/dd
configure:7530: checking how to truncate binary pipes
configure:7545: result: /bin/dd bs=4096 count=1
configure:7681: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:7684: $? = 0
configure:7903: checking for mt
configure:7933: result: no
configure:7953: checking if : is a manifest tool
configure:7959: : '-?'
configure:7967: result: no
configure:8673: checking how to run the C preprocessor
configure:8713: gcc -E -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c
configure:8720: $? = 0
configure:8751: gcc -E -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c
conftest.c:10:28: error: ac_nonexistent.h: No such file or directory
configure:8758: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "freecontact"
| #define PACKAGE_TARNAME "freecontact"
| #define PACKAGE_VERSION "1.0.21"
| #define PACKAGE_STRING "freecontact 1.0.21"
| #define PACKAGE_BUGREPORT "lkajan@rostlab.org"
| #define PACKAGE "freecontact"
| #define VERSION "1.0.21"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:8791: result: gcc -E
configure:8820: gcc -E -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c
configure:8827: $? = 0
configure:8858: gcc -E -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c
conftest.c:10:28: error: ac_nonexistent.h: No such file or directory
configure:8865: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "freecontact"
| #define PACKAGE_TARNAME "freecontact"
| #define PACKAGE_VERSION "1.0.21"
| #define PACKAGE_STRING "freecontact 1.0.21"
| #define PACKAGE_BUGREPORT "lkajan@rostlab.org"
| #define PACKAGE "freecontact"
| #define VERSION "1.0.21"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:8905: checking for ANSI C header files
configure:8935: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:8942: $? = 0
configure:9041: gcc -o conftest -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.c  >&5
configure:9045: $? = 0
configure:9051: ./conftest
configure:9055: $? = 0
configure:9073: result: yes
configure:9097: checking for sys/types.h
configure:9118: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:9125: $? = 0
configure:9142: result: yes
configure:9097: checking for sys/stat.h
configure:9118: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:9125: $? = 0
configure:9142: result: yes
configure:9097: checking for stdlib.h
configure:9118: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:9125: $? = 0
configure:9142: result: yes
configure:9097: checking for string.h
configure:9118: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:9125: $? = 0
configure:9142: result: yes
configure:9097: checking for memory.h
configure:9118: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:9125: $? = 0
configure:9142: result: yes
configure:9097: checking for strings.h
configure:9118: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:9125: $? = 0
configure:9142: result: yes
configure:9097: checking for inttypes.h
configure:9118: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:9125: $? = 0
configure:9142: result: yes
configure:9097: checking for stdint.h
configure:9118: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:9125: $? = 0
configure:9142: result: yes
configure:9097: checking for unistd.h
configure:9118: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:9125: $? = 0
configure:9142: result: yes
configure:9160: checking for dlfcn.h
configure:9181: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:9188: $? = 0
configure:9205: result: yes
configure:9477: checking for objdir
configure:9492: result: .libs
configure:9756: checking if gcc supports -fno-rtti -fno-exceptions
configure:9774: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C
configure:9778: $? = 0
configure:9791: result: no
configure:10149: checking for gcc option to produce PIC
configure:10156: result: -fPIC -DPIC
configure:10164: checking if gcc PIC flag -fPIC -DPIC works
configure:10182: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -fPIC -DPIC -DPIC conftest.c >&5
configure:10186: $? = 0
configure:10199: result: yes
configure:10228: checking if gcc static flag -static works
configure:10256: result: no
configure:10271: checking if gcc supports -c -o file.o
configure:10292: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -o out/conftest2.o conftest.c >&5
configure:10296: $? = 0
configure:10318: result: yes
configure:10326: checking if gcc supports -c -o file.o
configure:10373: result: yes
configure:10406: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:11756: result: yes
configure:11793: checking whether -lc should be explicitly linked in
configure:11801: gcc -c -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.c >&5
configure:11804: $? = 0
configure:11819: gcc -shared  -fPIC -DPIC conftest.o  -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep  -lc  \>/dev/null 2\>\&1
configure:11822: $? = 0
configure:11836: result: no
configure:11996: checking dynamic linker characteristics
configure:12587: gcc -o conftest -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib -Wl,-rpath -Wl,/foo conftest.c  >&5
configure:12594: $? = 0
configure:12846: result: GNU/Linux ld.so
configure:12968: checking how to hardcode library paths into programs
configure:12993: result: immediate
configure:13854: checking whether stripping libraries is possible
configure:13859: result: yes
configure:13894: checking if libtool supports shared libraries
configure:13896: result: yes
configure:13899: checking whether to build shared libraries
configure:13924: result: yes
configure:13927: checking whether to build static libraries
configure:13931: result: yes
configure:13954: checking how to run the C++ preprocessor
configure:13990: g++ -E -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.cpp
configure:13997: $? = 0
configure:14028: g++ -E -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.cpp
conftest.cpp:22:28: error: ac_nonexistent.h: No such file or directory
configure:14035: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "freecontact"
| #define PACKAGE_TARNAME "freecontact"
| #define PACKAGE_VERSION "1.0.21"
| #define PACKAGE_STRING "freecontact 1.0.21"
| #define PACKAGE_BUGREPORT "lkajan@rostlab.org"
| #define PACKAGE "freecontact"
| #define VERSION "1.0.21"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:14068: result: g++ -E
configure:14097: g++ -E -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.cpp
configure:14104: $? = 0
configure:14135: g++ -E -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.cpp
conftest.cpp:22:28: error: ac_nonexistent.h: No such file or directory
configure:14142: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "freecontact"
| #define PACKAGE_TARNAME "freecontact"
| #define PACKAGE_VERSION "1.0.21"
| #define PACKAGE_STRING "freecontact 1.0.21"
| #define PACKAGE_BUGREPORT "lkajan@rostlab.org"
| #define PACKAGE "freecontact"
| #define VERSION "1.0.21"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:14315: checking for ld used by g++
configure:14382: result: /usr/bin/ld -m elf_x86_64
configure:14391: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld
configure:14406: result: yes
configure:14461: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:15596: result: yes
configure:15632: g++ -c -g -O2 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.cpp >&5
configure:15635: $? = 0
configure:16116: checking for g++ option to produce PIC
configure:16123: result: -fPIC -DPIC
configure:16131: checking if g++ PIC flag -fPIC -DPIC works
configure:16149: g++ -c -g -O2 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -fPIC -DPIC -DPIC conftest.cpp >&5
configure:16153: $? = 0
configure:16166: result: yes
configure:16189: checking if g++ static flag -static works
configure:16217: result: no
configure:16229: checking if g++ supports -c -o file.o
configure:16250: g++ -c -g -O2 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -o out/conftest2.o conftest.cpp >&5
configure:16254: $? = 0
configure:16276: result: yes
configure:16281: checking if g++ supports -c -o file.o
configure:16328: result: yes
configure:16358: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:16398: result: yes
configure:16539: checking dynamic linker characteristics
configure:17316: result: GNU/Linux ld.so
configure:17381: checking how to hardcode library paths into programs
configure:17406: result: immediate
configure:17547: checking if libtool supports shared libraries
configure:17549: result: yes
configure:17552: checking whether to build shared libraries
configure:17576: result: yes
configure:17579: checking whether to build static libraries
configure:17583: result: yes
configure:17935: checking for gfortran option to produce PIC
configure:17942: result: -fPIC
configure:17950: checking if gfortran PIC flag -fPIC works
configure:17968: gfortran -c -g -O2 -fPIC conftest.f >&5
configure:17972: $? = 0
configure:17985: result: yes
configure:18008: checking if gfortran static flag -static works
configure:18036: result: no
configure:18048: checking if gfortran supports -c -o file.o
configure:18069: gfortran -c -g -O2 -o out/conftest2.o conftest.f >&5
configure:18073: $? = 0
configure:18095: result: yes
configure:18100: checking if gfortran supports -c -o file.o
configure:18147: result: yes
configure:18177: checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:19465: result: yes
configure:19606: checking dynamic linker characteristics
configure:20373: result: GNU/Linux ld.so
configure:20438: checking how to hardcode library paths into programs
configure:20463: result: immediate
configure:20600: checking if libtool supports shared libraries
configure:20602: result: yes
configure:20605: checking whether to build shared libraries
configure:20629: result: yes
configure:20632: checking whether to build static libraries
configure:20636: result: yes
configure:20670: gfortran -c -g -O2  conftest.f >&5
configure:20673: $? = 0
configure:21133: checking for gfortran option to produce PIC
configure:21140: result: -fPIC
configure:21148: checking if gfortran PIC flag -fPIC works
configure:21166: gfortran -c -g -O2 -fPIC  conftest.f >&5
configure:21170: $? = 0
configure:21183: result: yes
configure:21206: checking if gfortran static flag -static works
configure:21234: result: no
configure:21246: checking if gfortran supports -c -o file.o
configure:21267: gfortran -c -g -O2 -o out/conftest2.o  conftest.f >&5
configure:21271: $? = 0
configure:21293: result: yes
configure:21298: checking if gfortran supports -c -o file.o
configure:21345: result: yes
configure:21375: checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:22663: result: yes
configure:22804: checking dynamic linker characteristics
configure:23571: result: GNU/Linux ld.so
configure:23636: checking how to hardcode library paths into programs
configure:23661: result: immediate
configure:23728: -O3 enables: 
configure:23745: checking for a BSD-compatible install
configure:23813: result: /usr/bin/install -c
configure:23874: checking for boostlib >= 1.20.0
configure:23953: g++ -c -g -O2 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0//include conftest.cpp >&5
configure:23960: $? = 0
configure:23966: result: yes
configure:24179: checking whether the Boost::Program_Options library is available
configure:24213: g++ -c -g -O2 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0//include conftest.cpp >&5
configure:24220: $? = 0
configure:24242: result: yes
configure:24255: checking for exit in -lboost_program_options-gcc44-mt-1_38
configure:24290: g++ -o conftest -g -O2 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0//include -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0//lib conftest.cpp -lboost_program_options-gcc44-mt-1_38   >&5
configure:24297: $? = 0
configure:24320: result: yes
configure:24501: checking whether HAVE_BOOST_PROGRAM_OPTIONS is declared
configure:24530: g++ -c -g -O2 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.cpp >&5
configure:24537: $? = 0
configure:24552: result: yes
configure:24565: checking for OpenMP flag of C++ compiler
configure:24611: g++ -o conftest -g -O2 -fopenmp -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.cpp  >&5
configure:24618: $? = 0
configure:24641: result: -fopenmp
configure:24666: checking how to get verbose linking output from gfortran
configure:24682: gfortran -c -g -O2 conftest.f >&5
configure:24689: $? = 0
configure:24711: gfortran -o conftest -g -O2 -v -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.f
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.7 20120313 (Red Hat 4.4.7-23) (GCC) 
 /usr/libexec/gcc/x86_64-redhat-linux/4.4.7/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -auxbase conftest -g -O2 -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-redhat-linux/4.4.7/finclude -o /tmp/ccIUWQbR.s
GNU Fortran (GCC) version 4.4.7 20120313 (Red Hat 4.4.7-23) (x86_64-redhat-linux)
	compiled by GNU C version 4.4.7 20120313 (Red Hat 4.4.7-23), GMP version 4.3.1, MPFR version 2.4.1.
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
 as -V -Qy -o /tmp/ccLnDVgS.o /tmp/ccIUWQbR.s
GNU assembler version 2.20.51.0.2 (x86_64-redhat-linux) using BFD version version 2.20.51.0.2-5.48.el6_10.1 20100205
 /usr/libexec/gcc/x86_64-redhat-linux/4.4.7/collect2 --eh-frame-hdr --build-id -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. /tmp/ccLnDVgS.o -lgfortranbegin -lgfortran -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o
configure:24780: result: -v
configure:24782: checking for Fortran 77 libraries of gfortran
configure:24805: gfortran -o conftest -g -O2 -v -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.f
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.7 20120313 (Red Hat 4.4.7-23) (GCC) 
 /usr/libexec/gcc/x86_64-redhat-linux/4.4.7/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -auxbase conftest -g -O2 -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-redhat-linux/4.4.7/finclude -o /tmp/ccgpE9zX.s
GNU Fortran (GCC) version 4.4.7 20120313 (Red Hat 4.4.7-23) (x86_64-redhat-linux)
	compiled by GNU C version 4.4.7 20120313 (Red Hat 4.4.7-23), GMP version 4.3.1, MPFR version 2.4.1.
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
 as -V -Qy -o /tmp/ccDdGwWY.o /tmp/ccgpE9zX.s
GNU assembler version 2.20.51.0.2 (x86_64-redhat-linux) using BFD version version 2.20.51.0.2-5.48.el6_10.1 20100205
 /usr/libexec/gcc/x86_64-redhat-linux/4.4.7/collect2 --eh-frame-hdr --build-id -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. /tmp/ccDdGwWY.o -lgfortranbegin -lgfortran -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o
configure:24982: result:  -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. -lgfortranbegin -lgfortran -lm
configure:24998: checking for dummy main to link with Fortran 77 libraries
configure:25042: gcc -o conftest -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.c   -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. -lgfortranbegin -lgfortran -lm >&5
configure:25049: $? = 0
configure:25137: result: none
configure:25176: checking for Fortran 77 name-mangling scheme
configure:25195: gfortran -c -g -O2 conftest.f >&5
configure:25202: $? = 0
configure:25257: gcc -o conftest -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.c cfortran_test.o   -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. -lgfortranbegin -lgfortran -lm >&5
/tmp/ccI9VTki.o: In function `main':
conftest.c:(.text+0xa): undefined reference to `foobar'
collect2: ld returned 1 exit status
configure:25264: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "freecontact"
| #define PACKAGE_TARNAME "freecontact"
| #define PACKAGE_VERSION "1.0.21"
| #define PACKAGE_STRING "freecontact 1.0.21"
| #define PACKAGE_BUGREPORT "lkajan@rostlab.org"
| #define PACKAGE "freecontact"
| #define VERSION "1.0.21"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_BOOST /**/
| #define HAVE_BOOST_PROGRAM_OPTIONS /**/
| #define HAVE_OPENMP 1
| /* end confdefs.h.  */
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char foobar ();
| #ifdef F77_DUMMY_MAIN
| 
| #  ifdef __cplusplus
|      extern "C"
| #  endif
|    int F77_DUMMY_MAIN() { return 1; }
| 
| #endif
| int
| main ()
| {
| return foobar ();
|   ;
|   return 0;
| }
configure:25257: gcc -o conftest -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.c cfortran_test.o   -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. -lgfortranbegin -lgfortran -lm >&5
configure:25264: $? = 0
configure:25346: gcc -o conftest -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.c cfortran_test.o   -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. -lgfortranbegin -lgfortran -lm >&5
configure:25353: $? = 0
configure:25416: result: lower case, underscore, no extra underscore
configure:25564: checking if sgemm_ is being linked in already
configure:25602: g++ -o conftest -g -O2 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.cpp   -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. -lgfortranbegin -lgfortran -lm >&5
/tmp/cczUQkBF.o: In function `main':
/home/casp14/DeepRank_db_tools/tools/DNCON2/freecontact-1.0.21/conftest.cpp:44: undefined reference to `sgemm_'
collect2: ld returned 1 exit status
configure:25609: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "freecontact"
| #define PACKAGE_TARNAME "freecontact"
| #define PACKAGE_VERSION "1.0.21"
| #define PACKAGE_STRING "freecontact 1.0.21"
| #define PACKAGE_BUGREPORT "lkajan@rostlab.org"
| #define PACKAGE "freecontact"
| #define VERSION "1.0.21"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_BOOST /**/
| #define HAVE_BOOST_PROGRAM_OPTIONS /**/
| #define HAVE_OPENMP 1
| /* end confdefs.h.  */
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char sgemm_ ();
| #ifdef F77_DUMMY_MAIN
| 
| #  ifdef __cplusplus
|      extern "C"
| #  endif
|    int F77_DUMMY_MAIN() { return 1; }
| 
| #endif
| int
| main ()
| {
| return sgemm_ ();
|   ;
|   return 0;
| }
configure:25628: result: no
configure:25636: checking for sgemm_ in -lopenblas
configure:25679: g++ -o conftest -g -O2 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.cpp -lopenblas    -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. -lgfortranbegin -lgfortran -lm >&5
configure:25686: $? = 0
configure:25709: result: yes
configure:27613: checking for cheev_
configure:27677: g++ -o conftest -g -O2 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.cpp  -lopenblas  -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. -lgfortranbegin -lgfortran -lm >&5
configure:27684: $? = 0
configure:27706: result: yes
configure:28033: checking for the pthreads library -lpthreads
configure:28089: gcc -o conftest -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38  -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.c -lpthreads  >&5
/usr/bin/ld: cannot find -lpthreads
collect2: ld returned 1 exit status
configure:28096: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "freecontact"
| #define PACKAGE_TARNAME "freecontact"
| #define PACKAGE_VERSION "1.0.21"
| #define PACKAGE_STRING "freecontact 1.0.21"
| #define PACKAGE_BUGREPORT "lkajan@rostlab.org"
| #define PACKAGE "freecontact"
| #define VERSION "1.0.21"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_BOOST /**/
| #define HAVE_BOOST_PROGRAM_OPTIONS /**/
| #define HAVE_OPENMP 1
| #define HAVE_BLAS 1
| #define HAVE_LAPACK 1
| /* end confdefs.h.  */
| #include <pthread.h>
|                         static void routine(void *a) { a = 0; }
|                         static void *start_routine(void *a) { return a; }
| #ifdef F77_DUMMY_MAIN
| 
| #  ifdef __cplusplus
|      extern "C"
| #  endif
|    int F77_DUMMY_MAIN() { return 1; }
| 
| #endif
| int
| main ()
| {
| pthread_t th; pthread_attr_t attr;
|                         pthread_create(&th, 0, start_routine, 0);
|                         pthread_join(th, 0);
|                         pthread_attr_init(&attr);
|                         pthread_cleanup_push(routine, 0);
|                         pthread_cleanup_pop(0) /* ; */
|   ;
|   return 0;
| }
configure:28119: result: no
configure:27978: checking whether pthreads work without any flags
configure:28089: gcc -o conftest -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38  -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.c   >&5
/tmp/ccUwqvBp.o: In function `main':
conftest.c:(.text+0x42): undefined reference to `pthread_create'
conftest.c:(.text+0x53): undefined reference to `pthread_join'
conftest.c:(.text+0xbb): undefined reference to `__pthread_register_cancel'
conftest.c:(.text+0xca): undefined reference to `__pthread_unregister_cancel'
collect2: ld returned 1 exit status
configure:28096: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "freecontact"
| #define PACKAGE_TARNAME "freecontact"
| #define PACKAGE_VERSION "1.0.21"
| #define PACKAGE_STRING "freecontact 1.0.21"
| #define PACKAGE_BUGREPORT "lkajan@rostlab.org"
| #define PACKAGE "freecontact"
| #define VERSION "1.0.21"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_BOOST /**/
| #define HAVE_BOOST_PROGRAM_OPTIONS /**/
| #define HAVE_OPENMP 1
| #define HAVE_BLAS 1
| #define HAVE_LAPACK 1
| /* end confdefs.h.  */
| #include <pthread.h>
|                         static void routine(void *a) { a = 0; }
|                         static void *start_routine(void *a) { return a; }
| #ifdef F77_DUMMY_MAIN
| 
| #  ifdef __cplusplus
|      extern "C"
| #  endif
|    int F77_DUMMY_MAIN() { return 1; }
| 
| #endif
| int
| main ()
| {
| pthread_t th; pthread_attr_t attr;
|                         pthread_create(&th, 0, start_routine, 0);
|                         pthread_join(th, 0);
|                         pthread_attr_init(&attr);
|                         pthread_cleanup_push(routine, 0);
|                         pthread_cleanup_pop(0) /* ; */
|   ;
|   return 0;
| }
configure:28119: result: no
configure:27983: checking whether pthreads work with -Kthread
configure:28089: gcc -o conftest -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -Kthread -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.c   >&5
gcc: unrecognized option '-Kthread'
/tmp/cc94ItRl.o: In function `main':
conftest.c:(.text+0x42): undefined reference to `pthread_create'
conftest.c:(.text+0x53): undefined reference to `pthread_join'
conftest.c:(.text+0xbb): undefined reference to `__pthread_register_cancel'
conftest.c:(.text+0xca): undefined reference to `__pthread_unregister_cancel'
collect2: ld returned 1 exit status
configure:28096: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "freecontact"
| #define PACKAGE_TARNAME "freecontact"
| #define PACKAGE_VERSION "1.0.21"
| #define PACKAGE_STRING "freecontact 1.0.21"
| #define PACKAGE_BUGREPORT "lkajan@rostlab.org"
| #define PACKAGE "freecontact"
| #define VERSION "1.0.21"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_BOOST /**/
| #define HAVE_BOOST_PROGRAM_OPTIONS /**/
| #define HAVE_OPENMP 1
| #define HAVE_BLAS 1
| #define HAVE_LAPACK 1
| /* end confdefs.h.  */
| #include <pthread.h>
|                         static void routine(void *a) { a = 0; }
|                         static void *start_routine(void *a) { return a; }
| #ifdef F77_DUMMY_MAIN
| 
| #  ifdef __cplusplus
|      extern "C"
| #  endif
|    int F77_DUMMY_MAIN() { return 1; }
| 
| #endif
| int
| main ()
| {
| pthread_t th; pthread_attr_t attr;
|                         pthread_create(&th, 0, start_routine, 0);
|                         pthread_join(th, 0);
|                         pthread_attr_init(&attr);
|                         pthread_cleanup_push(routine, 0);
|                         pthread_cleanup_pop(0) /* ; */
|   ;
|   return 0;
| }
configure:28119: result: no
configure:27983: checking whether pthreads work with -kthread
configure:28089: gcc -o conftest -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -kthread -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.c   >&5
gcc: unrecognized option '-kthread'
/tmp/ccZZNUsw.o: In function `main':
conftest.c:(.text+0x42): undefined reference to `pthread_create'
conftest.c:(.text+0x53): undefined reference to `pthread_join'
conftest.c:(.text+0xbb): undefined reference to `__pthread_register_cancel'
conftest.c:(.text+0xca): undefined reference to `__pthread_unregister_cancel'
collect2: ld returned 1 exit status
configure:28096: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "freecontact"
| #define PACKAGE_TARNAME "freecontact"
| #define PACKAGE_VERSION "1.0.21"
| #define PACKAGE_STRING "freecontact 1.0.21"
| #define PACKAGE_BUGREPORT "lkajan@rostlab.org"
| #define PACKAGE "freecontact"
| #define VERSION "1.0.21"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_BOOST /**/
| #define HAVE_BOOST_PROGRAM_OPTIONS /**/
| #define HAVE_OPENMP 1
| #define HAVE_BLAS 1
| #define HAVE_LAPACK 1
| /* end confdefs.h.  */
| #include <pthread.h>
|                         static void routine(void *a) { a = 0; }
|                         static void *start_routine(void *a) { return a; }
| #ifdef F77_DUMMY_MAIN
| 
| #  ifdef __cplusplus
|      extern "C"
| #  endif
|    int F77_DUMMY_MAIN() { return 1; }
| 
| #endif
| int
| main ()
| {
| pthread_t th; pthread_attr_t attr;
|                         pthread_create(&th, 0, start_routine, 0);
|                         pthread_join(th, 0);
|                         pthread_attr_init(&attr);
|                         pthread_cleanup_push(routine, 0);
|                         pthread_cleanup_pop(0) /* ; */
|   ;
|   return 0;
| }
configure:28119: result: no
configure:28033: checking for the pthreads library -llthread
configure:28089: gcc -o conftest -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38  -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.c -llthread  >&5
/usr/bin/ld: cannot find -llthread
collect2: ld returned 1 exit status
configure:28096: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "freecontact"
| #define PACKAGE_TARNAME "freecontact"
| #define PACKAGE_VERSION "1.0.21"
| #define PACKAGE_STRING "freecontact 1.0.21"
| #define PACKAGE_BUGREPORT "lkajan@rostlab.org"
| #define PACKAGE "freecontact"
| #define VERSION "1.0.21"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_BOOST /**/
| #define HAVE_BOOST_PROGRAM_OPTIONS /**/
| #define HAVE_OPENMP 1
| #define HAVE_BLAS 1
| #define HAVE_LAPACK 1
| /* end confdefs.h.  */
| #include <pthread.h>
|                         static void routine(void *a) { a = 0; }
|                         static void *start_routine(void *a) { return a; }
| #ifdef F77_DUMMY_MAIN
| 
| #  ifdef __cplusplus
|      extern "C"
| #  endif
|    int F77_DUMMY_MAIN() { return 1; }
| 
| #endif
| int
| main ()
| {
| pthread_t th; pthread_attr_t attr;
|                         pthread_create(&th, 0, start_routine, 0);
|                         pthread_join(th, 0);
|                         pthread_attr_init(&attr);
|                         pthread_cleanup_push(routine, 0);
|                         pthread_cleanup_pop(0) /* ; */
|   ;
|   return 0;
| }
configure:28119: result: no
configure:27983: checking whether pthreads work with -pthread
configure:28089: gcc -o conftest -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -pthread -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.c   >&5
configure:28096: $? = 0
configure:28119: result: yes
configure:28138: checking for joinable pthread attribute
configure:28171: gcc -o conftest -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -pthread -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.c   >&5
configure:28178: $? = 0
configure:28198: result: PTHREAD_CREATE_JOINABLE
configure:28208: checking if more special flags are required for pthreads
configure:28222: result: no
configure:28228: checking for PTHREAD_PRIO_INHERIT
configure:28264: gcc -o conftest -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -pthread -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.c   >&5
conftest.c: In function 'main':
conftest.c:40: error: 'PTHREAD_PRIO_INHERIT' undeclared (first use in this function)
conftest.c:40: error: (Each undeclared identifier is reported only once
conftest.c:40: error: for each function it appears in.)
configure:28271: $? = 1
configure: failed program was:
| 
|                     /* confdefs.h.  */
| #define PACKAGE_NAME "freecontact"
| #define PACKAGE_TARNAME "freecontact"
| #define PACKAGE_VERSION "1.0.21"
| #define PACKAGE_STRING "freecontact 1.0.21"
| #define PACKAGE_BUGREPORT "lkajan@rostlab.org"
| #define PACKAGE "freecontact"
| #define VERSION "1.0.21"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_BOOST /**/
| #define HAVE_BOOST_PROGRAM_OPTIONS /**/
| #define HAVE_OPENMP 1
| #define HAVE_BLAS 1
| #define HAVE_LAPACK 1
| /* end confdefs.h.  */
| #include <pthread.h>
| #ifdef F77_DUMMY_MAIN
| 
| #  ifdef __cplusplus
|      extern "C"
| #  endif
|    int F77_DUMMY_MAIN() { return 1; }
| 
| #endif
| int
| main ()
| {
| int i = PTHREAD_PRIO_INHERIT;
|   ;
|   return 0;
| }
configure:28292: result: no
configure:28673: checking for Xerces C++ Parser
configure:28753: result: no
configure:28776: checking for xsdcxx
configure:28806: result: no
configure:28814: checking for xsdcxx
configure:28844: result: no
configure:28852: checking for xsd
configure:28882: result: no
configure:28923: XSDCXX is not enabled
configure:28938: checking for x86 cpuid  output
configure:28985: gcc -o conftest -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.c  >&5
conftest.c: In function 'main':
conftest.c:41: error: expected expression before ',' token
configure:28989: $? = 1
configure: program exited with status 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "freecontact"
| #define PACKAGE_TARNAME "freecontact"
| #define PACKAGE_VERSION "1.0.21"
| #define PACKAGE_STRING "freecontact 1.0.21"
| #define PACKAGE_BUGREPORT "lkajan@rostlab.org"
| #define PACKAGE "freecontact"
| #define VERSION "1.0.21"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_BOOST /**/
| #define HAVE_BOOST_PROGRAM_OPTIONS /**/
| #define HAVE_OPENMP 1
| #define HAVE_BLAS 1
| #define HAVE_LAPACK 1
| #define HAVE_PTHREAD 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef F77_DUMMY_MAIN
| 
| #  ifdef __cplusplus
|      extern "C"
| #  endif
|    int F77_DUMMY_MAIN() { return 1; }
| 
| #endif
| int
| main ()
| {
| 
|      int op = , eax, ebx, ecx, edx;
|      FILE *f;
|       __asm__("cpuid"
|         : "=a" (eax), "=b" (ebx), "=c" (ecx), "=d" (edx)
|         : "a" (op));
|      f = fopen("conftest_cpuid", "w"); if (!f) return 1;
|      fprintf(f, "%x:%x:%x:%x\n", eax, ebx, ecx, edx);
|      fclose(f);
|      return 0;
| 
|   ;
|   return 0;
| }
configure:29016: result: unknown
configure:29136: checking for x86 cpuid 0x00000001 output
configure:29183: gcc -o conftest -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 -L/home/casp14/DeepRank_db_tools//tools/OpenBLAS/lib -L/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/lib conftest.c  >&5
configure:29187: $? = 0
configure:29193: ./conftest
configure:29197: $? = 0
configure:29214: result: 306e4:23200800:7fbee3ff:bfebfbff
configure:29226: checking whether mmx is supported
configure:29238: result: yes
configure:29241: checking whether sse is supported
configure:29253: result: yes
configure:29256: checking whether sse2 is supported
configure:29268: result: yes
configure:29271: checking whether sse3 is supported
configure:29283: result: yes
configure:29286: checking whether ssse3 is supported
configure:29298: result: yes
configure:29301: checking whether sse4.1 is supported
configure:29313: result: yes
configure:29316: checking whether sse4.2 is supported
configure:29328: result: yes
configure:29331: checking whether avx is supported
configure:29343: result: yes
configure:29347: checking whether C++ compiler accepts -mmmx
configure:29384: g++ -c -g -O2  -mmmx -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.cpp >&5
configure:29391: $? = 0
configure:29407: result: yes
configure:29430: checking whether C++ compiler accepts -msse
configure:29467: g++ -c -g -O2  -msse -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.cpp >&5
configure:29474: $? = 0
configure:29490: result: yes
configure:29513: checking whether C++ compiler accepts -msse2
configure:29550: g++ -c -g -O2  -msse2 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.cpp >&5
configure:29557: $? = 0
configure:29573: result: yes
configure:29596: checking whether C++ compiler accepts -msse3
configure:29633: g++ -c -g -O2  -msse3 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.cpp >&5
configure:29640: $? = 0
configure:29656: result: yes
configure:29679: checking whether C++ compiler accepts -mssse3
configure:29716: g++ -c -g -O2  -mssse3 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.cpp >&5
configure:29723: $? = 0
configure:29739: result: yes
configure:29762: checking whether C++ compiler accepts -msse4.1
configure:29799: g++ -c -g -O2  -msse4.1 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.cpp >&5
configure:29806: $? = 0
configure:29822: result: yes
configure:29845: checking whether C++ compiler accepts -msse4.2
configure:29882: g++ -c -g -O2  -msse4.2 -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.cpp >&5
configure:29889: $? = 0
configure:29905: result: yes
configure:29928: checking whether C++ compiler accepts -mavx
configure:29965: g++ -c -g -O2  -mavx -I/home/casp14/DeepRank_db_tools//tools/OpenBLAS/include -I/home/casp14/DeepRank_db_tools//tools/boost_1_38_0/include/boost-1_38 conftest.cpp >&5
configure:29972: $? = 0
configure:29988: result: yes
configure:30120: checking for doxygen
configure:30138: found /usr/bin/doxygen
configure:30150: result: /usr/bin/doxygen
configure:30226: checking for perl
configure:30244: found /usr/bin/perl
configure:30256: result: /usr/bin/perl
configure:32112: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by freecontact config.status 1.0.21, which was
generated by GNU Autoconf 2.63.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on sunflower.rnet.missouri.edu

config.status:1271: creating Makefile
config.status:1271: creating lib/Doxyfile
config.status:1271: creating lib/Makefile
config.status:1271: creating src/Makefile
config.status:1271: creating lib/config.h
config.status:1545: executing depfiles commands
config.status:1545: executing libtool commands