top_srcdir = ..
srcdir     = .


CC       = gcc -std=gnu99
CFLAGS   = -O3 -fomit-frame-pointer -fstrict-aliasing -march=core2 -pthread -fPIC
SIMDFLAGS= -msse2
CPPFLAGS = 
LDFLAGS  = 
DEFS     = -DHAVE_CONFIG_H
LIBS     = -lhmmer -leasel    -lm
MPILIBS  = 
IMPLDIR  = impl_sse

ESLDIR    = easel

ESLINC   = -I../${ESLDIR} -I${top_srcdir}/easel
SRCINC   = -I../src   -I${top_srcdir}/src

PROGS    = create-profmark\
	   rocplot

PROGOBJS  =\
	create-profmark.o\
	rocplot.o

# beautification magic stolen from git 
QUIET_SUBDIR0 = +${MAKE} -C #space separator after -c
QUIET_SUBDIR1 = 
ifndef V
	QUIET_CC      = @echo '    ' CC $@;
	QUIET_GEN     = @echo '    ' GEN $@;
	QUIET_AR      = @echo '    ' AR $@;
	QUIET_SUBDIR0 = +@subdir=
	QUIET_SUBDIR1 = ; echo '    ' SUBDIR $$subdir; \
		        ${MAKE} -C $$subdir
endif

.PHONY: all dev distclean clean

all:    ${PROGS}
dev:    ${PROGS}

${PROGS}: %: %.o  ../${ESLDIR}/libeasel.a ../src/libhmmer.a 
	${QUIET_GEN}${CC} ${CFLAGS} ${DEFS} ${LDFLAGS} -L../${ESLDIR} -L../src -o $@ $@.o ${LIBS}

${PROGOBJS}: ../src/hmmer.h ../src/p7_config.h

.c.o: 
	${QUIET_CC}${CC} ${ESLINC} ${SRCINC} ${CFLAGS} ${SIMDFLAGS} ${DEFS} -o $@ -c $<		

distclean: clean
	-rm -f Makefile

clean:
	-rm -f *.o *~ ${PROGS} 
	-rm -f *.gcno

################################################################
# HMMER - Biological sequence analysis with profile HMMs
# Version 3.1b2; February 2015
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Other copyrights also apply. See the COPYRIGHT file for a full list.
# 
# HMMER is distributed under the terms of the GNU General Public License
# (GPLv3). See the LICENSE file for details.
# 
# SVN $URL: https://svn.janelia.org/eddylab/eddys/src/hmmer/branches/3.1/profmark/Makefile.in $
# SVN $Id: Makefile.in 3844 2012-02-07 21:51:20Z eddys $
################################################################