/* A cached profile database. Used by the hmmpgmd daemon. */ #ifndef P7_HMMCACHE_INCLUDED #define P7_HMMCACHE_INCLUDED #include "esl_alphabet.h" #include "hmmer.h" typedef struct { char *name; /* name of the hmm database */ ESL_ALPHABET *abc; /* alphabet for database */ P7_OPROFILE **list; /* list of profiles [0 .. n-1] */ uint32_t lalloc; /* allocated length of */ uint32_t n; /* number of entries in */ } P7_HMMCACHE; extern int p7_hmmcache_Open (char *hmmfile, P7_HMMCACHE **ret_cache, char *errbuf); extern size_t p7_hmmcache_Sizeof (P7_HMMCACHE *cache); extern int p7_hmmcache_SetNumericNames(P7_HMMCACHE *cache); extern void p7_hmmcache_Close (P7_HMMCACHE *cache); #endif /*P7_HMMCACHE_INCLUDED*/ /***************************************************************** * HMMER - Biological sequence analysis with profile HMMs * Version 3.1b2; February 2015 * Copyright (C) 2015 Howard Hughes Medical Institute. * Other copyrights also apply. See the COPYRIGHT file for a full list. * * HMMER is distributed under the terms of the GNU General Public License * (GPLv3). See the LICENSE file for details. * * SVN $Id: p7_hmmcache.h 3754 2011-11-21 14:25:31Z eddys $ * SVN $URL: https://svn.janelia.org/eddylab/eddys/src/hmmer/branches/3.1/src/p7_hmmcache.h $ *****************************************************************/