ontoisobsolete

Function

Description

ontoisobsolete tests and ontology term retrieved by a query and returns "Obsolete" if the term is obsoleted in the ontology.

Ontologies from the EMBOSS data directory are used.

Usage

Command line arguments


Input file format

Output file format

A single line per term is is given, including the term id, namespace and name, and whether it is obsolete or not.

Data files

OBO-format ontologies must be installed in the EMBOSS data directory and indexed. This is done automatically for typical installations.

Notes

References

Warnings

None.

Diagnostic Error Messages

None.

Exit status

It exits with a status of 0.

Known bugs

None.

Author(s)

History

Target users

Comments