This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by R configure 3.2.0, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --prefix=/bmlfast/bml_casp15/tools/casp14/casp14_qa/tools/R-3.2.0 --with-readline=no --with-x=no ## --------- ## ## Platform. ## ## --------- ## hostname = orchid.rnet.missouri.edu uname -m = x86_64 uname -r = 4.18.0-513.18.1.el8_9.x86_64 uname -s = Linux uname -v = #1 SMP Thu Feb 22 03:02:37 EST 2024 /usr/bin/uname -p = x86_64 /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /bmlfast/bml_casp15/tools/casp14/casp14_qa//tools/EMBOSS-6.6.0/bin/ PATH: /bmlfast/bml_casp15/tools/casp14/DeepRank_db_tools/tools/python_virtualenv/bin PATH: /home/jl4mc/mambaforge/condabin PATH: /home/jl4mc/.local/bin PATH: /home/jl4mc/bin PATH: /usr/share/Modules/bin PATH: /usr/lib64/ccache PATH: /usr/local/bin PATH: /usr/bin PATH: /usr/local/sbin PATH: /usr/sbin PATH: /opt/puppetlabs/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:3679: checking build system type configure:3693: result: x86_64-unknown-linux-gnu configure:3713: checking host system type configure:3726: result: x86_64-unknown-linux-gnu configure:4461: checking for pwd configure:4479: found /usr/bin/pwd configure:4492: result: /usr/bin/pwd configure:4500: checking whether builddir is srcdir configure:4508: result: yes configure:4513: checking for working aclocal configure:4517: result: found configure:4526: checking for working autoconf configure:4530: result: found configure:4539: checking for working automake configure:4543: result: found configure:4552: checking for working autoheader configure:4556: result: found configure:4569: checking for gawk configure:4585: found /usr/bin/gawk configure:4596: result: gawk configure:4607: checking whether ln -s works configure:4611: result: yes configure:4622: checking for bison configure:4638: found /usr/bin/bison configure:4649: result: bison -y configure:4665: checking for ar configure:4681: found /usr/bin/ar configure:4692: result: ar configure:4720: checking for a BSD-compatible install configure:4788: result: /usr/bin/install -c configure:4823: checking for sed configure:4842: found /usr/bin/sed configure:4854: result: /usr/bin/sed configure:4872: checking for which configure:4890: found /usr/bin/which configure:4902: result: /usr/bin/which configure:4922: checking for less configure:4940: found /usr/bin/less configure:4952: result: /usr/bin/less configure:4975: checking for gtar configure:4993: found /usr/bin/gtar configure:5005: result: /usr/bin/gtar configure:5027: checking for tex configure:5060: result: no configure:5072: checking for pdftex configure:5105: result: no configure:5115: WARNING: you cannot build PDF versions of the R manuals configure:5122: checking for pdflatex configure:5155: result: no configure:5165: WARNING: you cannot build PDF versions of vignettes and help pages configure:5172: checking for makeindex configure:5205: result: no configure:5217: checking for texi2any configure:5250: result: no configure:5337: WARNING: you cannot build info or HTML versions of the R manuals configure:5348: checking for texi2dvi configure:5381: result: no configure:5398: checking for kpsewhich configure:5431: result: no configure:5440: checking for latex inconsolata package configure:5473: checking for unzip configure:5491: found /usr/bin/unzip configure:5503: result: /usr/bin/unzip configure:5519: checking for zip configure:5537: found /usr/bin/zip configure:5549: result: /usr/bin/zip configure:5565: checking for gzip configure:5583: found /usr/bin/gzip configure:5595: result: /usr/bin/gzip configure:5611: checking for bzip2 configure:5629: found /usr/bin/bzip2 configure:5641: result: /usr/bin/bzip2 configure:5659: checking for firefox configure:5677: found /usr/bin/firefox configure:5689: result: /usr/bin/firefox configure:5706: result: using default browser ... /usr/bin/firefox configure:5716: checking for acroread configure:5749: result: no configure:5716: checking for acroread4 configure:5749: result: no configure:5716: checking for xdg-open configure:5734: found /usr/bin/xdg-open configure:5746: result: /usr/bin/xdg-open configure:5767: checking for notangle configure:5798: result: false configure:5809: checking for realpath configure:5827: found /usr/bin/realpath configure:5840: result: /usr/bin/realpath configure:5853: checking for pkg-config configure:5872: found /usr/bin/pkg-config configure:5884: result: /usr/bin/pkg-config configure:5941: checking for gcc configure:5957: found /usr/lib64/ccache/gcc configure:5968: result: gcc configure:6197: checking for C compiler version configure:6206: gcc --version >&5 gcc (GCC) 8.5.0 20210514 (Red Hat 8.5.0-20) Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:6217: $? = 0 configure:6206: gcc -v >&5 Using built-in specs. COLLECT_GCC=/usr/bin/gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugs.almalinux.org/ --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 8.5.0 20210514 (Red Hat 8.5.0-20) (GCC) configure:6217: $? = 0 configure:6206: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:6217: $? = 1 configure:6206: gcc -qversion >&5 gcc: error: unrecognized command line option '-qversion'; did you mean '--version'? gcc: fatal error: no input files compilation terminated. configure:6217: $? = 1 configure:6237: checking whether the C compiler works configure:6259: gcc -I/usr/local/include -L/usr/local/lib64 conftest.c >&5 configure:6263: $? = 0 configure:6311: result: yes configure:6314: checking for C compiler default output file name configure:6316: result: a.out configure:6322: checking for suffix of executables configure:6329: gcc -o conftest -I/usr/local/include -L/usr/local/lib64 conftest.c >&5 configure:6333: $? = 0 configure:6355: result: configure:6377: checking whether we are cross compiling configure:6385: gcc -o conftest -I/usr/local/include -L/usr/local/lib64 conftest.c >&5 configure:6389: $? = 0 configure:6396: ./conftest configure:6400: $? = 0 configure:6415: result: no configure:6420: checking for suffix of object files configure:6442: gcc -c -I/usr/local/include conftest.c >&5 configure:6446: $? = 0 configure:6467: result: o configure:6471: checking whether we are using the GNU C compiler configure:6490: gcc -c -I/usr/local/include conftest.c >&5 configure:6490: $? = 0 configure:6499: result: yes configure:6508: checking whether gcc accepts -g configure:6528: gcc -c -g -I/usr/local/include conftest.c >&5 configure:6528: $? = 0 configure:6569: result: yes configure:6586: checking for gcc option to accept ISO C89 configure:6649: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:6649: $? = 0 configure:6662: result: none needed configure:6689: checking how to run the C preprocessor configure:6720: gcc -E -I/usr/local/include conftest.c configure:6720: $? = 0 configure:6734: gcc -E -I/usr/local/include conftest.c conftest.c:17:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:6734: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #include configure:6759: result: gcc -E configure:6779: gcc -E -I/usr/local/include conftest.c configure:6779: $? = 0 configure:6793: gcc -E -I/usr/local/include conftest.c conftest.c:17:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:6793: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #include configure:6822: checking for grep that handles long lines and -e configure:6880: result: /usr/bin/grep configure:6885: checking for egrep configure:6947: result: /usr/bin/grep -E configure:6953: checking whether gcc needs -traditional configure:6987: result: no configure:6999: checking how to run the C preprocessor configure:7069: result: gcc -E configure:7089: gcc -E -I/usr/local/include conftest.c configure:7089: $? = 0 configure:7103: gcc -E -I/usr/local/include conftest.c conftest.c:17:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:7103: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #include configure:7199: checking for f95 configure:7215: found /usr/bin/f95 configure:7226: result: f95 configure:7347: checking for Fortran 77 compiler version configure:7356: f95 --version >&5 GNU Fortran (GCC) 8.5.0 20210514 (Red Hat 8.5.0-20) Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:7367: $? = 0 configure:7356: f95 -v >&5 Using built-in specs. COLLECT_GCC=f95 COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugs.almalinux.org/ --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 8.5.0 20210514 (Red Hat 8.5.0-20) (GCC) configure:7367: $? = 0 configure:7356: f95 -V >&5 f95: error: unrecognized command line option '-V' f95: fatal error: no input files compilation terminated. configure:7367: $? = 1 configure:7356: f95 -qversion >&5 f95: error: unrecognized command line option '-qversion'; did you mean '--version'? f95: fatal error: no input files compilation terminated. configure:7367: $? = 1 configure:7376: checking whether we are using the GNU Fortran 77 compiler configure:7389: f95 -c conftest.F >&5 configure:7389: $? = 0 configure:7398: result: yes configure:7404: checking whether f95 accepts -g configure:7415: f95 -c -g conftest.f >&5 configure:7415: $? = 0 configure:7423: result: yes configure:7514: checking for g++ configure:7530: found /usr/lib64/ccache/g++ configure:7541: result: g++ configure:7568: checking for C++ compiler version configure:7577: g++ --version >&5 g++ (GCC) 8.5.0 20210514 (Red Hat 8.5.0-20) Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:7588: $? = 0 configure:7577: g++ -v >&5 Using built-in specs. COLLECT_GCC=/usr/bin/g++ COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugs.almalinux.org/ --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 8.5.0 20210514 (Red Hat 8.5.0-20) (GCC) configure:7588: $? = 0 configure:7577: g++ -V >&5 g++: error: unrecognized command line option '-V' g++: fatal error: no input files compilation terminated. configure:7588: $? = 1 configure:7577: g++ -qversion >&5 g++: error: unrecognized command line option '-qversion'; did you mean '--version'? g++: fatal error: no input files compilation terminated. configure:7588: $? = 1 configure:7592: checking whether we are using the GNU C++ compiler configure:7611: g++ -c -I/usr/local/include conftest.cpp >&5 configure:7611: $? = 0 configure:7620: result: yes configure:7629: checking whether g++ accepts -g configure:7649: g++ -c -g -I/usr/local/include conftest.cpp >&5 configure:7649: $? = 0 configure:7690: result: yes configure:7718: checking how to run the C++ preprocessor configure:7745: g++ -E -I/usr/local/include conftest.cpp configure:7745: $? = 0 configure:7759: g++ -E -I/usr/local/include conftest.cpp conftest.cpp:17:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:7759: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #include configure:7784: result: g++ -E configure:7804: g++ -E -I/usr/local/include conftest.cpp configure:7804: $? = 0 configure:7818: g++ -E -I/usr/local/include conftest.cpp conftest.cpp:17:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:7818: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | /* end confdefs.h. */ | #include configure:7852: checking whether __attribute__((visibility())) is supported configure:7863: gcc -Werror -S conftest.c -o conftest.s 1>&5 configure:7866: $? = 0 configure:7875: result: yes configure:7886: checking whether gcc accepts -fvisibility configure:7902: gcc -c -g -O2 -fvisibility=hidden -I/usr/local/include conftest.c >&5 configure:7902: $? = 0 configure:7909: result: yes configure:7934: checking whether f95 accepts -fvisibility configure:7944: f95 -c -g -O2 -fvisibility=hidden conftest.f >&5 configure:7944: $? = 0 configure:7951: result: yes configure:7974: checking for ANSI C header files configure:7994: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:7994: $? = 0 configure:8067: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c >&5 configure:8067: $? = 0 configure:8067: ./conftest configure:8067: $? = 0 configure:8078: result: yes configure:8091: checking for sys/types.h configure:8091: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8091: $? = 0 configure:8091: result: yes configure:8091: checking for sys/stat.h configure:8091: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8091: $? = 0 configure:8091: result: yes configure:8091: checking for stdlib.h configure:8091: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8091: $? = 0 configure:8091: result: yes configure:8091: checking for string.h configure:8091: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8091: $? = 0 configure:8091: result: yes configure:8091: checking for memory.h configure:8091: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8091: $? = 0 configure:8091: result: yes configure:8091: checking for strings.h configure:8091: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8091: $? = 0 configure:8091: result: yes configure:8091: checking for inttypes.h configure:8091: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8091: $? = 0 configure:8091: result: yes configure:8091: checking for stdint.h configure:8091: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8091: $? = 0 configure:8091: result: yes configure:8091: checking for unistd.h configure:8091: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8091: $? = 0 configure:8091: result: yes configure:8104: checking minix/config.h usability configure:8104: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c:61:10: fatal error: minix/config.h: No such file or directory #include ^~~~~~~~~~~~~~~~ compilation terminated. configure:8104: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:8104: result: no configure:8104: checking minix/config.h presence configure:8104: gcc -E -I/usr/local/include conftest.c conftest.c:28:10: fatal error: minix/config.h: No such file or directory #include ^~~~~~~~~~~~~~~~ compilation terminated. configure:8104: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include configure:8104: result: no configure:8104: checking for minix/config.h configure:8104: result: no configure:8125: checking whether it is safe to define __EXTENSIONS__ configure:8143: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:8143: $? = 0 configure:8150: result: yes configure:8220: checking for gcc configure:8236: found /usr/lib64/ccache/gcc configure:8247: result: gcc configure:8272: checking for Objective C compiler version configure:8281: gcc --version >&5 gcc (GCC) 8.5.0 20210514 (Red Hat 8.5.0-20) Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:8292: $? = 0 configure:8281: gcc -v >&5 Using built-in specs. COLLECT_GCC=/usr/bin/gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugs.almalinux.org/ --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 8.5.0 20210514 (Red Hat 8.5.0-20) (GCC) configure:8292: $? = 0 configure:8281: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:8292: $? = 1 configure:8281: gcc -qversion >&5 gcc: error: unrecognized command line option '-qversion'; did you mean '--version'? gcc: fatal error: no input files compilation terminated. configure:8292: $? = 1 configure:8296: checking whether we are using the GNU Objective C compiler configure:8315: gcc -c -I/usr/local/include conftest.m >&5 gcc: error: conftest.m: Objective-C compiler not installed on this system configure:8315: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | /* end confdefs.h. */ | | int | main () | { | #ifndef __GNUC__ | choke me | #endif | | ; | return 0; | } configure:8324: result: no configure:8333: checking whether gcc accepts -g configure:8353: gcc -c -g -I/usr/local/include conftest.m >&5 gcc: error: conftest.m: Objective-C compiler not installed on this system configure:8353: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:8368: gcc -c -I/usr/local/include conftest.m >&5 gcc: error: conftest.m: Objective-C compiler not installed on this system configure:8368: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:8384: gcc -c -g -I/usr/local/include conftest.m >&5 gcc: error: conftest.m: Objective-C compiler not installed on this system configure:8384: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:8394: result: no configure:8437: gcc -c -I/usr/local/include conftest.m >&5 gcc: error: conftest.m: Objective-C compiler not installed on this system configure:8437: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | /* end confdefs.h. */ | | int | main () | { | id foo; | ; | return 0; | } configure:8453: checking for Objective C++ compiler configure:8459: result: trying some possibilities configure:8504: checking whether g++ can compile ObjC++ running: g++ -c conftest.mm -I/usr/local/include g++: error: conftest.mm: Objective-C++ compiler not installed on this system configure:8537: result: no configure:8541: checking whether can compile ObjC++ running: -c conftest.mm -I/usr/local/include ./configure: line 8568: -c: command not found configure:8574: result: no configure:8591: result: no working ObjC++ compiler found configure:8663: checking for a sed that does not truncate output configure:8727: result: /usr/bin/sed configure:8745: checking for fgrep configure:8807: result: /usr/bin/grep -F configure:8835: checking for ld used by gcc configure:8902: result: /usr/bin/ld configure:8909: checking if the linker (/usr/bin/ld) is GNU ld configure:8924: result: yes configure:8936: checking for BSD- or MS-compatible name lister (nm) configure:8985: result: /usr/bin/nm -B configure:9103: checking the name lister (/usr/bin/nm -B) interface configure:9110: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:9113: /usr/bin/nm -B "conftest.o" configure:9116: output 0000000000000000 B some_variable configure:9123: result: BSD nm configure:9127: checking the maximum length of command line arguments configure:9247: result: 1572864 configure:9264: checking whether the shell understands some XSI constructs configure:9274: result: yes configure:9278: checking whether the shell understands "+=" configure:9284: result: yes configure:9319: checking for /usr/bin/ld option to reload object files configure:9326: result: -r configure:9395: checking for objdump configure:9411: found /usr/bin/objdump configure:9422: result: objdump configure:9454: checking how to recognize dependent libraries configure:9650: result: pass_all configure:9815: checking for strip configure:9831: found /usr/bin/strip configure:9842: result: strip configure:9914: checking for ranlib configure:9930: found /usr/bin/ranlib configure:9941: result: ranlib configure:10031: checking command to parse /usr/bin/nm -B output from gcc object configure:10149: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:10152: $? = 0 configure:10156: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm configure:10159: $? = 0 configure:10213: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c conftstm.o >&5 configure:10216: $? = 0 configure:10254: result: ok configure:10866: checking for dlfcn.h configure:10866: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:10866: $? = 0 configure:10866: result: yes configure:10991: checking for C++ compiler version configure:11000: g++ --version >&5 g++ (GCC) 8.5.0 20210514 (Red Hat 8.5.0-20) Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:11011: $? = 0 configure:11000: g++ -v >&5 Using built-in specs. COLLECT_GCC=/usr/bin/g++ COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugs.almalinux.org/ --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 8.5.0 20210514 (Red Hat 8.5.0-20) (GCC) configure:11011: $? = 0 configure:11000: g++ -V >&5 g++: error: unrecognized command line option '-V' g++: fatal error: no input files compilation terminated. configure:11011: $? = 1 configure:11000: g++ -qversion >&5 g++: error: unrecognized command line option '-qversion'; did you mean '--version'? g++: fatal error: no input files compilation terminated. configure:11011: $? = 1 configure:11015: checking whether we are using the GNU C++ compiler configure:11043: result: yes configure:11052: checking whether g++ accepts -g configure:11113: result: yes configure:11144: checking how to run the C++ preprocessor configure:11210: result: g++ -E configure:11230: g++ -E -I/usr/local/include conftest.cpp configure:11230: $? = 0 configure:11244: g++ -E -I/usr/local/include conftest.cpp conftest.cpp:34:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:11244: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:11385: checking for Fortran 77 compiler version configure:11394: f95 --version >&5 GNU Fortran (GCC) 8.5.0 20210514 (Red Hat 8.5.0-20) Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:11405: $? = 0 configure:11394: f95 -v >&5 Using built-in specs. COLLECT_GCC=f95 COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugs.almalinux.org/ --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 8.5.0 20210514 (Red Hat 8.5.0-20) (GCC) configure:11405: $? = 0 configure:11394: f95 -V >&5 f95: error: unrecognized command line option '-V' f95: fatal error: no input files compilation terminated. configure:11405: $? = 1 configure:11394: f95 -qversion >&5 f95: error: unrecognized command line option '-qversion'; did you mean '--version'? f95: fatal error: no input files compilation terminated. configure:11405: $? = 1 configure:11414: checking whether we are using the GNU Fortran 77 compiler configure:11436: result: yes configure:11442: checking whether f95 accepts -g configure:11461: result: yes configure:11639: checking for objdir configure:11654: result: .libs configure:11950: checking if gcc supports -fno-rtti -fno-exceptions configure:11968: gcc -c -g -O2 -I/usr/local/include -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C configure:11972: $? = 0 configure:11985: result: no configure:12005: checking for gcc option to produce PIC configure:12277: result: -fPIC -DPIC configure:12289: checking if gcc PIC flag -fPIC -DPIC works configure:12307: gcc -c -g -O2 -I/usr/local/include -fPIC -DPIC -DPIC conftest.c >&5 configure:12311: $? = 0 configure:12324: result: yes configure:12348: checking if gcc static flag -static works configure:12376: result: no configure:12391: checking if gcc supports -c -o file.o configure:12412: gcc -c -g -O2 -I/usr/local/include -o out/conftest2.o conftest.c >&5 configure:12416: $? = 0 configure:12438: result: yes configure:12446: checking if gcc supports -c -o file.o configure:12493: result: yes configure:12526: checking whether the gcc linker (/usr/bin/ld) supports shared libraries configure:13512: result: yes configure:13549: checking whether -lc should be explicitly linked in configure:13554: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:13557: $? = 0 configure:13572: gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1 configure:13575: $? = 0 configure:13587: result: no configure:13751: checking dynamic linker characteristics configure:14184: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 -Wl,-rpath -Wl,/foo conftest.c >&5 configure:14184: $? = 0 configure:14402: result: GNU/Linux ld.so configure:14504: checking how to hardcode library paths into programs configure:14529: result: immediate configure:15049: checking whether stripping libraries is possible configure:15054: result: yes configure:15089: checking if libtool supports shared libraries configure:15091: result: yes configure:15094: checking whether to build shared libraries configure:15115: result: yes configure:15118: checking whether to build static libraries configure:15122: result: no configure:15265: checking for ld used by g++ configure:15332: result: /usr/bin/ld configure:15339: checking if the linker (/usr/bin/ld) is GNU ld configure:15354: result: yes configure:15409: checking whether the g++ linker (/usr/bin/ld) supports shared libraries configure:16322: result: yes configure:16350: g++ -c -g -O2 -I/usr/local/include conftest.cpp >&5 configure:16353: $? = 0 configure:16535: checking for g++ option to produce PIC configure:16852: result: -fPIC -DPIC configure:16861: checking if g++ PIC flag -fPIC -DPIC works configure:16879: g++ -c -g -O2 -I/usr/local/include -fPIC -DPIC -DPIC conftest.cpp >&5 configure:16883: $? = 0 configure:16896: result: yes configure:16917: checking if g++ static flag -static works configure:16945: result: no configure:16957: checking if g++ supports -c -o file.o configure:16978: g++ -c -g -O2 -I/usr/local/include -o out/conftest2.o conftest.cpp >&5 configure:16982: $? = 0 configure:17004: result: yes configure:17009: checking if g++ supports -c -o file.o configure:17056: result: yes configure:17086: checking whether the g++ linker (/usr/bin/ld) supports shared libraries configure:17112: result: yes configure:17249: checking dynamic linker characteristics configure:17630: g++ -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 -Wl,-rpath -Wl,/foo conftest.cpp >&5 configure:17630: $? = 0 configure:17848: result: GNU/Linux ld.so configure:17899: checking how to hardcode library paths into programs configure:17924: result: immediate configure:18065: checking if libtool supports shared libraries configure:18067: result: yes configure:18070: checking whether to build shared libraries configure:18090: result: yes configure:18093: checking whether to build static libraries configure:18097: result: no configure:18111: checking for f95 option to produce PIC configure:18383: result: -fPIC configure:18392: checking if f95 PIC flag -fPIC works configure:18410: f95 -c -g -O2 -fPIC conftest.f >&5 configure:18414: $? = 0 configure:18427: result: yes configure:18448: checking if f95 static flag -static works configure:18476: result: no configure:18488: checking if f95 supports -c -o file.o configure:18509: f95 -c -g -O2 -o out/conftest2.o conftest.f >&5 configure:18513: $? = 0 configure:18535: result: yes configure:18540: checking if f95 supports -c -o file.o configure:18587: result: yes configure:18617: checking whether the f95 linker (/usr/bin/ld) supports shared libraries configure:19590: result: yes configure:19727: checking dynamic linker characteristics configure:20102: f95 -o conftest -g -O2 -L/usr/local/lib64 -Wl,-rpath -Wl,/foo conftest.f >&5 configure:20102: $? = 0 configure:20320: result: GNU/Linux ld.so configure:20371: checking how to hardcode library paths into programs configure:20396: result: immediate configure:20652: checking for cos in -lm configure:20677: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lm >&5 conftest.c:42:6: warning: conflicting types for built-in function 'cos' [-Wbuiltin-declaration-mismatch] char cos (); ^~~ configure:20677: $? = 0 configure:20686: result: yes configure:20700: checking for sin in -lm configure:20725: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lm >&5 conftest.c:42:6: warning: conflicting types for built-in function 'sin' [-Wbuiltin-declaration-mismatch] char sin (); ^~~ configure:20725: $? = 0 configure:20734: result: yes configure:20856: checking for dlopen in -ldl configure:20881: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:20881: $? = 0 configure:20890: result: yes configure:21205: checking for ANSI C header files configure:21309: result: yes configure:21320: checking for dirent.h that defines DIR configure:21339: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21339: $? = 0 configure:21347: result: yes configure:21360: checking for library containing opendir configure:21391: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:21391: $? = 0 configure:21408: result: none required configure:21479: checking for sys/wait.h that is POSIX.1 compatible configure:21505: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21505: $? = 0 configure:21512: result: yes configure:21541: checking arpa/inet.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking arpa/inet.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for arpa/inet.h configure:21541: result: yes configure:21541: checking dl.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c:74:10: fatal error: dl.h: No such file or directory #include ^~~~~~ compilation terminated. configure:21541: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:21541: result: no configure:21541: checking dl.h presence configure:21541: gcc -E -I/usr/local/include conftest.c conftest.c:41:10: fatal error: dl.h: No such file or directory #include ^~~~~~ compilation terminated. configure:21541: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | /* end confdefs.h. */ | #include configure:21541: result: no configure:21541: checking for dl.h configure:21541: result: no configure:21541: checking for dlfcn.h configure:21541: result: yes configure:21541: checking elf.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking elf.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for elf.h configure:21541: result: yes configure:21541: checking features.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking features.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for features.h configure:21541: result: yes configure:21541: checking fcntl.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking fcntl.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for fcntl.h configure:21541: result: yes configure:21541: checking floatingpoint.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c:78:10: fatal error: floatingpoint.h: No such file or directory #include ^~~~~~~~~~~~~~~~~ compilation terminated. configure:21541: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:21541: result: no configure:21541: checking floatingpoint.h presence configure:21541: gcc -E -I/usr/local/include conftest.c conftest.c:45:10: fatal error: floatingpoint.h: No such file or directory #include ^~~~~~~~~~~~~~~~~ compilation terminated. configure:21541: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | /* end confdefs.h. */ | #include configure:21541: result: no configure:21541: checking for floatingpoint.h configure:21541: result: no configure:21541: checking fpu_control.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking fpu_control.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for fpu_control.h configure:21541: result: yes configure:21541: checking glob.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking glob.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for glob.h configure:21541: result: yes configure:21541: checking grp.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking grp.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for grp.h configure:21541: result: yes configure:21541: checking langinfo.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking langinfo.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for langinfo.h configure:21541: result: yes configure:21541: checking netdb.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking netdb.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for netdb.h configure:21541: result: yes configure:21541: checking netinet/in.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking netinet/in.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for netinet/in.h configure:21541: result: yes configure:21541: checking pwd.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking pwd.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for pwd.h configure:21541: result: yes configure:21541: checking sched.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking sched.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for sched.h configure:21541: result: yes configure:21541: checking for strings.h configure:21541: result: yes configure:21541: checking sys/param.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking sys/param.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for sys/param.h configure:21541: result: yes configure:21541: checking sys/resource.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking sys/resource.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for sys/resource.h configure:21541: result: yes configure:21541: checking sys/select.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking sys/select.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for sys/select.h configure:21541: result: yes configure:21541: checking sys/socket.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking sys/socket.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for sys/socket.h configure:21541: result: yes configure:21541: checking for sys/stat.h configure:21541: result: yes configure:21541: checking sys/time.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking sys/time.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for sys/time.h configure:21541: result: yes configure:21541: checking sys/times.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking sys/times.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for sys/times.h configure:21541: result: yes configure:21541: checking sys/utsname.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking sys/utsname.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for sys/utsname.h configure:21541: result: yes configure:21541: checking for unistd.h configure:21541: result: yes configure:21541: checking utime.h usability configure:21541: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking utime.h presence configure:21541: gcc -E -I/usr/local/include conftest.c configure:21541: $? = 0 configure:21541: result: yes configure:21541: checking for utime.h configure:21541: result: yes configure:21555: checking stdalign.h usability configure:21555: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21555: $? = 0 configure:21555: result: yes configure:21555: checking stdalign.h presence configure:21555: gcc -E -I/usr/local/include conftest.c configure:21555: $? = 0 configure:21555: result: yes configure:21555: checking for stdalign.h configure:21555: result: yes configure:21572: checking errno.h usability configure:21572: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21572: $? = 0 configure:21572: result: yes configure:21572: checking errno.h presence configure:21572: gcc -E -I/usr/local/include conftest.c configure:21572: $? = 0 configure:21572: result: yes configure:21572: checking for errno.h configure:21572: result: yes configure:21572: checking for inttypes.h configure:21572: result: yes configure:21572: checking limits.h usability configure:21572: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21572: $? = 0 configure:21572: result: yes configure:21572: checking limits.h presence configure:21572: gcc -E -I/usr/local/include conftest.c configure:21572: $? = 0 configure:21572: result: yes configure:21572: checking for limits.h configure:21572: result: yes configure:21572: checking locale.h usability configure:21572: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21572: $? = 0 configure:21572: result: yes configure:21572: checking locale.h presence configure:21572: gcc -E -I/usr/local/include conftest.c configure:21572: $? = 0 configure:21572: result: yes configure:21572: checking for locale.h configure:21572: result: yes configure:21572: checking stdarg.h usability configure:21572: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21572: $? = 0 configure:21572: result: yes configure:21572: checking stdarg.h presence configure:21572: gcc -E -I/usr/local/include conftest.c configure:21572: $? = 0 configure:21572: result: yes configure:21572: checking for stdarg.h configure:21572: result: yes configure:21572: checking stdbool.h usability configure:21572: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21572: $? = 0 configure:21572: result: yes configure:21572: checking stdbool.h presence configure:21572: gcc -E -I/usr/local/include conftest.c configure:21572: $? = 0 configure:21572: result: yes configure:21572: checking for stdbool.h configure:21572: result: yes configure:21572: checking for stdint.h configure:21572: result: yes configure:21572: checking for string.h configure:21572: result: yes configure:21585: checking whether setjmp.h is POSIX.1 compatible configure:21603: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21603: $? = 0 configure:21610: result: yes configure:21612: checking whether sigsetjmp is declared configure:21612: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21612: $? = 0 configure:21612: result: yes configure:21623: checking whether siglongjmp is declared configure:21623: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21623: $? = 0 configure:21623: result: yes configure:21647: checking for GNU C library with version >= 2 configure:21670: result: yes configure:21681: checking return type of signal handlers configure:21699: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:83:10: error: void value not ignored as it ought to be return *(signal (0, 0)) (0) == 1; ~^~~~~~~~~~~~~~~~~~ configure:21699: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | return *(signal (0, 0)) (0) == 1; | ; | return 0; | } configure:21706: result: void configure:21715: checking for uint64_t configure:21715: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21715: $? = 0 configure:21715: result: yes configure:21729: checking for int64_t configure:21729: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21729: $? = 0 configure:21729: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:114:22: error: expected expression before ')' token if (sizeof ((int64_t))) ^ configure:21729: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((int64_t))) | return 0; | ; | return 0; | } configure:21729: result: yes configure:21738: checking for int_fast64_t configure:21738: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21738: $? = 0 configure:21738: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:115:27: error: expected expression before ')' token if (sizeof ((int_fast64_t))) ^ configure:21738: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((int_fast64_t))) | return 0; | ; | return 0; | } configure:21738: result: yes configure:21748: checking for pid_t configure:21748: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21748: $? = 0 configure:21748: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:116:20: error: expected expression before ')' token if (sizeof ((pid_t))) ^ configure:21748: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((pid_t))) | return 0; | ; | return 0; | } configure:21748: result: yes configure:21759: checking for size_t configure:21759: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21759: $? = 0 configure:21759: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:116:21: error: expected expression before ')' token if (sizeof ((size_t))) ^ configure:21759: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:21759: result: yes configure:21770: checking whether SIZE_MAX is declared configure:21803: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:21803: $? = 0 configure:21803: ./conftest configure:21803: $? = 0 configure:21813: result: yes configure:21821: checking for blkcnt_t configure:21821: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21821: $? = 0 configure:21821: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:117:23: error: expected expression before ')' token if (sizeof ((blkcnt_t))) ^ configure:21821: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((blkcnt_t))) | return 0; | ; | return 0; | } configure:21821: result: yes configure:21833: checking for type of socket length configure:21859: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21859: $? = 0 configure:21879: result: socklen_t * configure:21888: checking for stack_t configure:21888: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21888: $? = 0 configure:21888: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:87:22: error: expected expression before ')' token if (sizeof ((stack_t))) ^ configure:21888: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | /* end confdefs.h. */ | #include | | int | main () | { | if (sizeof ((stack_t))) | return 0; | ; | return 0; | } configure:21888: result: yes configure:21904: checking for intptr_t configure:21904: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21904: $? = 0 configure:21904: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:93:23: error: expected expression before ')' token if (sizeof ((intptr_t))) ^ configure:21904: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | /* end confdefs.h. */ | #ifdef HAVE_INTTYPES_H | #include | #endif | #ifdef HAVE_STDINT_H | #include | #endif | | int | main () | { | if (sizeof ((intptr_t))) | return 0; | ; | return 0; | } configure:21904: result: yes configure:21919: checking for uintptr_t configure:21919: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21919: $? = 0 configure:21919: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:94:24: error: expected expression before ')' token if (sizeof ((uintptr_t))) ^ configure:21919: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | /* end confdefs.h. */ | #ifdef HAVE_INTTYPES_H | #include | #endif | #ifdef HAVE_STDINT_H | #include | #endif | | int | main () | { | if (sizeof ((uintptr_t))) | return 0; | ; | return 0; | } configure:21919: result: yes configure:21942: checking whether byte ordering is bigendian configure:21965: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:21965: $? = 0 configure:21983: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:92:2: error: unknown type name 'not'; did you mean 'ino_t'? not big endian ^~~ ino_t conftest.c:92:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'endian' not big endian ^~~~~~ configure:21983: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | #if BYTE_ORDER != BIG_ENDIAN | not big endian | #endif | | ; | return 0; | } configure:22057: result: no configure:22071: checking for an ANSI C-conforming const configure:22137: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:22137: $? = 0 configure:22144: result: yes configure:22156: checking for gcc option to accept ISO C99 configure:22305: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:22305: $? = 0 configure:22318: result: none needed configure:22426: checking for gcc option to accept ISO Standard C configure:22437: result: none needed configure:22444: checking for inline configure:22459: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:22459: $? = 0 configure:22466: result: inline configure:22482: checking size of int configure:22487: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:22487: $? = 0 configure:22487: ./conftest configure:22487: $? = 0 configure:22501: result: 4 configure:22523: checking size of long configure:22528: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:22528: $? = 0 configure:22528: ./conftest configure:22528: $? = 0 configure:22542: result: 8 configure:22556: checking size of long long configure:22561: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:22561: $? = 0 configure:22561: ./conftest configure:22561: $? = 0 configure:22575: result: 8 configure:22589: checking size of double configure:22594: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:22594: $? = 0 configure:22594: ./conftest configure:22594: $? = 0 configure:22608: result: 8 configure:22622: checking size of size_t configure:22627: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:22627: $? = 0 configure:22627: ./conftest configure:22627: $? = 0 configure:22641: result: 8 configure:22671: checking size of long double configure:22676: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:22676: $? = 0 configure:22676: ./conftest configure:22676: $? = 0 configure:22690: result: 16 configure:22706: checking whether we can compute C Make dependencies configure:22744: result: yes, using $(CC) -MM configure:22768: checking whether gcc supports -c -o FILE.lo configure:22778: gcc -g -O2 -c conftest.c -o TMP/conftest.lo 1>&5 configure:22781: $? = 0 configure:22784: gcc -g -O2 -c conftest.c -o TMP/conftest.lo 1>&5 configure:22787: $? = 0 configure:22795: result: yes configure:22824: checking for gcc option to support OpenMP configure:22839: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 conftest.c:96:2: error: unknown type name 'choke' choke me ^~~~~ conftest.c:96:10: error: expected ';' before 'typedef' choke me ^ ; configure:22839: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:22857: gcc -o conftest -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:22857: $? = 0 configure:22871: result: -fopenmp configure:22902: checking how to get verbose linking output from f95 configure:22912: f95 -c -g -O2 conftest.f >&5 configure:22912: $? = 0 configure:22930: f95 -o conftest -g -O2 -v -L/usr/local/lib64 conftest.f Using built-in specs. Target: x86_64-redhat-linux Thread model: posix gcc version 8.5.0 20210514 (Red Hat 8.5.0-20) (GCC) /usr/libexec/gcc/x86_64-redhat-linux/8/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -march=x86-64 -auxbase conftest -g -O2 -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-redhat-linux/8/finclude -o /tmp/ccpfqWpr.s GNU Fortran (GCC) version 8.5.0 20210514 (Red Hat 8.5.0-20) (x86_64-redhat-linux) compiled by GNU C version 8.5.0 20210514 (Red Hat 8.5.0-20), GMP version 6.1.2, MPFR version 3.1.6-p2, MPC version 1.1.0, isl version isl-0.16.1-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GNU Fortran2008 (GCC) version 8.5.0 20210514 (Red Hat 8.5.0-20) (x86_64-redhat-linux) compiled by GNU C version 8.5.0 20210514 (Red Hat 8.5.0-20), GMP version 6.1.2, MPFR version 3.1.6-p2, MPC version 1.1.0, isl version isl-0.16.1-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 as -v --64 -o /tmp/ccCi4UTS.o /tmp/ccpfqWpr.s GNU assembler version 2.30 (x86_64-redhat-linux) using BFD version version 2.30-123.el8 Reading specs from /usr/lib/gcc/x86_64-redhat-linux/8/libgfortran.spec rename spec lib to liborig /usr/libexec/gcc/x86_64-redhat-linux/8/collect2 -plugin /usr/libexec/gcc/x86_64-redhat-linux/8/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper -plugin-opt=-fresolution=/tmp/ccSNCHTa.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --no-add-needed --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/8/crtbegin.o -L/usr/local/lib64 -L/usr/lib/gcc/x86_64-redhat-linux/8 -L/usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/8/../../.. /tmp/ccCi4UTS.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-redhat-linux/8/crtend.o /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/crtn.o configure:23013: result: -v configure:23015: checking for Fortran 77 libraries of f95 configure:23038: f95 -o conftest -g -O2 -v -L/usr/local/lib64 conftest.f Using built-in specs. Target: x86_64-redhat-linux Thread model: posix gcc version 8.5.0 20210514 (Red Hat 8.5.0-20) (GCC) /usr/libexec/gcc/x86_64-redhat-linux/8/f951 conftest.f -ffixed-form -quiet -dumpbase conftest.f -mtune=generic -march=x86-64 -auxbase conftest -g -O2 -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-redhat-linux/8/finclude -o /tmp/ccoJYHrp.s GNU Fortran (GCC) version 8.5.0 20210514 (Red Hat 8.5.0-20) (x86_64-redhat-linux) compiled by GNU C version 8.5.0 20210514 (Red Hat 8.5.0-20), GMP version 6.1.2, MPFR version 3.1.6-p2, MPC version 1.1.0, isl version isl-0.16.1-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GNU Fortran2008 (GCC) version 8.5.0 20210514 (Red Hat 8.5.0-20) (x86_64-redhat-linux) compiled by GNU C version 8.5.0 20210514 (Red Hat 8.5.0-20), GMP version 6.1.2, MPFR version 3.1.6-p2, MPC version 1.1.0, isl version isl-0.16.1-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 as -v --64 -o /tmp/ccCnEs3K.o /tmp/ccoJYHrp.s GNU assembler version 2.30 (x86_64-redhat-linux) using BFD version version 2.30-123.el8 Reading specs from /usr/lib/gcc/x86_64-redhat-linux/8/libgfortran.spec rename spec lib to liborig /usr/libexec/gcc/x86_64-redhat-linux/8/collect2 -plugin /usr/libexec/gcc/x86_64-redhat-linux/8/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper -plugin-opt=-fresolution=/tmp/cceWY4nt.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --no-add-needed --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/8/crtbegin.o -L/usr/local/lib64 -L/usr/lib/gcc/x86_64-redhat-linux/8 -L/usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/8/../../.. /tmp/ccCnEs3K.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-redhat-linux/8/crtend.o /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/crtn.o configure:23234: result: -L/usr/local/lib64 -L/usr/lib/gcc/x86_64-redhat-linux/8 -L/usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/8/../../.. -lgfortran -lm -lquadmath configure:23252: checking how to get verbose linking output from gcc configure:23268: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:23268: $? = 0 configure:23290: gcc -o conftest -g -O2 -v -I/usr/local/include -L/usr/local/lib64 conftest.c >&5 Using built-in specs. COLLECT_GCC=/usr/bin/gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugs.almalinux.org/ --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 8.5.0 20210514 (Red Hat 8.5.0-20) (GCC) COLLECT_GCC_OPTIONS='-o' 'conftest' '-g' '-O2' '-v' '-I' '/usr/local/include' '-L/usr/local/lib64' '-mtune=generic' '-march=x86-64' /usr/libexec/gcc/x86_64-redhat-linux/8/cc1 -quiet -v -I /usr/local/include conftest.c -quiet -dumpbase conftest.c -mtune=generic -march=x86-64 -auxbase conftest -g -O2 -version -o /tmp/ccLDQf6l.s GNU C17 (GCC) version 8.5.0 20210514 (Red Hat 8.5.0-20) (x86_64-redhat-linux) compiled by GNU C version 8.5.0 20210514 (Red Hat 8.5.0-20), GMP version 6.1.2, MPFR version 3.1.6-p2, MPC version 1.1.0, isl version isl-0.16.1-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/x86_64-redhat-linux/8/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/x86_64-redhat-linux/8/../../../../x86_64-redhat-linux/include" ignoring duplicate directory "/usr/local/include" as it is a non-system directory that duplicates a system directory #include "..." search starts here: #include <...> search starts here: /usr/lib/gcc/x86_64-redhat-linux/8/include /usr/local/include /usr/include End of search list. GNU C17 (GCC) version 8.5.0 20210514 (Red Hat 8.5.0-20) (x86_64-redhat-linux) compiled by GNU C version 8.5.0 20210514 (Red Hat 8.5.0-20), GMP version 6.1.2, MPFR version 3.1.6-p2, MPC version 1.1.0, isl version isl-0.16.1-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 1749005cacad58030b1d51d7507ab6c9 COLLECT_GCC_OPTIONS='-o' 'conftest' '-g' '-O2' '-v' '-I' '/usr/local/include' '-L/usr/local/lib64' '-mtune=generic' '-march=x86-64' as -v -I /usr/local/include --64 -o /tmp/ccVeGQ67.o /tmp/ccLDQf6l.s GNU assembler version 2.30 (x86_64-redhat-linux) using BFD version version 2.30-123.el8 COMPILER_PATH=/usr/libexec/gcc/x86_64-redhat-linux/8/:/usr/libexec/gcc/x86_64-redhat-linux/8/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/8/:/usr/lib/gcc/x86_64-redhat-linux/ LIBRARY_PATH=/usr/lib/gcc/x86_64-redhat-linux/8/:/usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/8/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' 'conftest' '-g' '-O2' '-v' '-I' '/usr/local/include' '-L/usr/local/lib64' '-mtune=generic' '-march=x86-64' /usr/libexec/gcc/x86_64-redhat-linux/8/collect2 -plugin /usr/libexec/gcc/x86_64-redhat-linux/8/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper -plugin-opt=-fresolution=/tmp/ccRgIT9n.res -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s --build-id --no-add-needed --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/8/crtbegin.o -L/usr/local/lib64 -L/usr/lib/gcc/x86_64-redhat-linux/8 -L/usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/8/../../.. /tmp/ccVeGQ67.o -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/gcc/x86_64-redhat-linux/8/crtend.o /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/crtn.o COLLECT_GCC_OPTIONS='-o' 'conftest' '-g' '-O2' '-v' '-I' '/usr/local/include' '-L/usr/local/lib64' '-mtune=generic' '-march=x86-64' configure:23336: result: -v configure:23338: checking for C libraries of gcc configure:23365: gcc -o conftest -g -O2 -v -I/usr/local/include -L/usr/local/lib64 conftest.c >&5 Using built-in specs. COLLECT_GCC=/usr/bin/gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugs.almalinux.org/ --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 8.5.0 20210514 (Red Hat 8.5.0-20) (GCC) COLLECT_GCC_OPTIONS='-o' 'conftest' '-g' '-O2' '-v' '-I' '/usr/local/include' '-L/usr/local/lib64' '-mtune=generic' '-march=x86-64' /usr/libexec/gcc/x86_64-redhat-linux/8/cc1 -quiet -v -I /usr/local/include conftest.c -quiet -dumpbase conftest.c -mtune=generic -march=x86-64 -auxbase conftest -g -O2 -version -o /tmp/cchrokUi.s GNU C17 (GCC) version 8.5.0 20210514 (Red Hat 8.5.0-20) (x86_64-redhat-linux) compiled by GNU C version 8.5.0 20210514 (Red Hat 8.5.0-20), GMP version 6.1.2, MPFR version 3.1.6-p2, MPC version 1.1.0, isl version isl-0.16.1-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/x86_64-redhat-linux/8/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/x86_64-redhat-linux/8/../../../../x86_64-redhat-linux/include" ignoring duplicate directory "/usr/local/include" as it is a non-system directory that duplicates a system directory #include "..." search starts here: #include <...> search starts here: /usr/lib/gcc/x86_64-redhat-linux/8/include /usr/local/include /usr/include End of search list. GNU C17 (GCC) version 8.5.0 20210514 (Red Hat 8.5.0-20) (x86_64-redhat-linux) compiled by GNU C version 8.5.0 20210514 (Red Hat 8.5.0-20), GMP version 6.1.2, MPFR version 3.1.6-p2, MPC version 1.1.0, isl version isl-0.16.1-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 1749005cacad58030b1d51d7507ab6c9 COLLECT_GCC_OPTIONS='-o' 'conftest' '-g' '-O2' '-v' '-I' '/usr/local/include' '-L/usr/local/lib64' '-mtune=generic' '-march=x86-64' as -v -I /usr/local/include --64 -o /tmp/ccN8e1Xw.o /tmp/cchrokUi.s GNU assembler version 2.30 (x86_64-redhat-linux) using BFD version version 2.30-123.el8 COMPILER_PATH=/usr/libexec/gcc/x86_64-redhat-linux/8/:/usr/libexec/gcc/x86_64-redhat-linux/8/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/8/:/usr/lib/gcc/x86_64-redhat-linux/ LIBRARY_PATH=/usr/lib/gcc/x86_64-redhat-linux/8/:/usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/8/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' 'conftest' '-g' '-O2' '-v' '-I' '/usr/local/include' '-L/usr/local/lib64' '-mtune=generic' '-march=x86-64' /usr/libexec/gcc/x86_64-redhat-linux/8/collect2 -plugin /usr/libexec/gcc/x86_64-redhat-linux/8/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper -plugin-opt=-fresolution=/tmp/cc43yT3K.res -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s --build-id --no-add-needed --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/8/crtbegin.o -L/usr/local/lib64 -L/usr/lib/gcc/x86_64-redhat-linux/8 -L/usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/8/../../.. /tmp/ccN8e1Xw.o -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/gcc/x86_64-redhat-linux/8/crtend.o /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/crtn.o COLLECT_GCC_OPTIONS='-o' 'conftest' '-g' '-O2' '-v' '-I' '/usr/local/include' '-L/usr/local/lib64' '-mtune=generic' '-march=x86-64' configure:23516: result: -L/usr/local/lib64 -L/usr/lib/gcc/x86_64-redhat-linux/8 -L/usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/8/../../.. -lgcc_s configure:23651: checking for dummy main to link with Fortran 77 libraries configure:23685: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm -lgfortran -lm -lquadmath >&5 configure:23685: $? = 0 configure:23730: result: none configure:23763: checking for Fortran 77 name-mangling scheme configure:23776: f95 -c -g -O2 conftest.f >&5 configure:23776: $? = 0 configure:23817: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c cfortran_test.o -ldl -lm -lgfortran -lm -lquadmath >&5 /tmp/ccAklRQP.o: In function `main': /bmlfast/bml_casp15/tools/casp14/casp14_qa/tools/R-3.2.0/conftest.c:113: undefined reference to `foobar' collect2: error: ld returned 1 exit status configure:23817: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char foobar (); | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | return foobar (); | ; | return 0; | } configure:23817: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c cfortran_test.o -ldl -lm -lgfortran -lm -lquadmath >&5 configure:23817: $? = 0 configure:23875: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c cfortran_test.o -ldl -lm -lgfortran -lm -lquadmath >&5 configure:23875: $? = 0 configure:23917: result: lower case, underscore, no extra underscore configure:23994: checking whether f95 appends underscores to external names configure:24010: result: yes configure:24022: checking whether f95 appends extra underscores to external names configure:24038: result: no configure:24052: checking whether mixed C/Fortran code can be run configure:24110: result: yes configure:24124: checking whether f95 and gcc agree on int and double configure:24202: result: yes configure:24216: checking whether f95 and gcc agree on double complex configure:24292: result: yes configure:24327: checking for f95 option to support OpenMP configure:24342: f95 -o conftest -g -O2 -L/usr/local/lib64 conftest.f -ldl -lm >&5 conftest.f:5:9: tid = 42 1 Error: Symbol 'tid' at (1) has no IMPLICIT type configure:24342: $? = 1 configure: failed program was: | | program main | implicit none | !$ integer tid | tid = 42 | call omp_set_num_threads(2) | end | configure:24360: f95 -o conftest -g -O2 -fopenmp -L/usr/local/lib64 conftest.f -ldl -lm >&5 configure:24360: $? = 0 configure:24374: result: -fopenmp configure:24396: checking whether g++ accepts -M for generating dependencies configure:24411: result: yes configure:24456: checking for g++ option to support OpenMP configure:24471: g++ -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.cpp -ldl -lm >&5 conftest.cpp:100:2: error: 'choke' does not name a type choke me ^~~~~ In file included from conftest.cpp:102: /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:39:3: error: 'omp_lock_t' does not name a type } omp_lock_t; ^~~~~~~~~~ /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:95:28: error: variable or field 'omp_init_lock' declared void extern void omp_init_lock (omp_lock_t *) __GOMP_NOTHROW; ^~~~~~~~~~ /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:95:28: error: 'omp_lock_t' was not declared in this scope /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:95:28: note: suggested alternative: 'omp_lock_hint_t' extern void omp_init_lock (omp_lock_t *) __GOMP_NOTHROW; ^~~~~~~~~~ omp_lock_hint_t /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:95:40: error: expected primary-expression before ')' token extern void omp_init_lock (omp_lock_t *) __GOMP_NOTHROW; ^ /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:96:38: error: variable or field 'omp_init_lock_with_hint' declared void extern void omp_init_lock_with_hint (omp_lock_t *, omp_lock_hint_t) ^~~~~~~~~~ /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:96:38: error: 'omp_lock_t' was not declared in this scope /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:96:38: note: suggested alternative: 'omp_lock_hint_t' extern void omp_init_lock_with_hint (omp_lock_t *, omp_lock_hint_t) ^~~~~~~~~~ omp_lock_hint_t /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:96:50: error: expected primary-expression before ',' token extern void omp_init_lock_with_hint (omp_lock_t *, omp_lock_hint_t) ^ /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:96:67: error: expected primary-expression before ')' token extern void omp_init_lock_with_hint (omp_lock_t *, omp_lock_hint_t) ^ /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:98:31: error: variable or field 'omp_destroy_lock' declared void extern void omp_destroy_lock (omp_lock_t *) __GOMP_NOTHROW; ^~~~~~~~~~ /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:98:31: error: 'omp_lock_t' was not declared in this scope /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:98:31: note: suggested alternative: 'omp_lock_hint_t' extern void omp_destroy_lock (omp_lock_t *) __GOMP_NOTHROW; ^~~~~~~~~~ omp_lock_hint_t /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:98:43: error: expected primary-expression before ')' token extern void omp_destroy_lock (omp_lock_t *) __GOMP_NOTHROW; ^ /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:99:27: error: variable or field 'omp_set_lock' declared void extern void omp_set_lock (omp_lock_t *) __GOMP_NOTHROW; ^~~~~~~~~~ /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:99:27: error: 'omp_lock_t' was not declared in this scope /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:99:27: note: suggested alternative: 'omp_lock_hint_t' extern void omp_set_lock (omp_lock_t *) __GOMP_NOTHROW; ^~~~~~~~~~ omp_lock_hint_t /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:99:39: error: expected primary-expression before ')' token extern void omp_set_lock (omp_lock_t *) __GOMP_NOTHROW; ^ /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:100:29: error: variable or field 'omp_unset_lock' declared void extern void omp_unset_lock (omp_lock_t *) __GOMP_NOTHROW; ^~~~~~~~~~ /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:100:29: error: 'omp_lock_t' was not declared in this scope /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:100:29: note: suggested alternative: 'omp_lock_hint_t' extern void omp_unset_lock (omp_lock_t *) __GOMP_NOTHROW; ^~~~~~~~~~ omp_lock_hint_t /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:100:41: error: expected primary-expression before ')' token extern void omp_unset_lock (omp_lock_t *) __GOMP_NOTHROW; ^ /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:101:27: error: 'omp_lock_t' was not declared in this scope extern int omp_test_lock (omp_lock_t *) __GOMP_NOTHROW; ^~~~~~~~~~ /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:101:27: note: suggested alternative: 'omp_lock_hint_t' extern int omp_test_lock (omp_lock_t *) __GOMP_NOTHROW; ^~~~~~~~~~ omp_lock_hint_t /usr/lib/gcc/x86_64-redhat-linux/8/include/omp.h:101:39: error: expected primary-expression before ')' token extern int omp_test_lock (omp_lock_t *) __GOMP_NOTHROW; ^ configure:24471: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:24489: g++ -o conftest -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib64 conftest.cpp -ldl -lm >&5 configure:24489: $? = 0 configure:24503: result: -fopenmp configure:24523: checking whether we can compute ObjC Make dependencies configure:24539: result: no configure:25123: checking whether C runtime needs -D__NO_MATH_INLINES configure:25150: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 conftest.c: In function 'main': conftest.c:106:3: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration] exit (y != 0.); ^~~~ conftest.c:106:3: warning: incompatible implicit declaration of built-in function 'exit' conftest.c:106:3: note: include '' or provide a declaration of 'exit' conftest.c:100:1: +#include #if defined(__GLIBC__) conftest.c:106:3: exit (y != 0.); ^~~~ configure:25150: $? = 0 configure:25150: ./conftest configure:25150: $? = 0 configure:25160: result: no configure:26208: checking for xmkmf configure:26241: result: no configure:26863: checking whether g++ supports C++11 features by default configure:26889: g++ -c -g -O2 -fpic -I/usr/local/include conftest.cpp >&5 configure:26889: $? = 0 configure:26896: result: yes configure:27103: checking for off_t configure:27103: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:27103: $? = 0 configure:27103: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:137:20: error: expected expression before ')' token if (sizeof ((off_t))) ^ configure:27103: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((off_t))) | return 0; | ; | return 0; | } configure:27103: result: yes configure:27115: checking for working alloca.h configure:27140: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27140: $? = 0 configure:27148: result: yes configure:27156: checking for alloca configure:27201: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27201: $? = 0 configure:27209: result: yes configure:27315: checking whether alloca is declared configure:27315: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:27315: $? = 0 configure:27315: result: yes configure:27342: checking whether expm1 exists and is declared configure:27370: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27370: $? = 0 configure:27379: result: yes configure:27342: checking whether hypot exists and is declared configure:27370: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27370: $? = 0 configure:27379: result: yes configure:27342: checking whether log1p exists and is declared configure:27370: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27370: $? = 0 configure:27379: result: yes configure:27342: checking whether log1pl exists and is declared configure:27370: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27370: $? = 0 configure:27379: result: yes configure:27342: checking whether log2 exists and is declared configure:27370: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27370: $? = 0 configure:27379: result: yes configure:27342: checking whether log10 exists and is declared configure:27370: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27370: $? = 0 configure:27379: result: yes configure:27342: checking whether nearbyint exists and is declared configure:27370: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27370: $? = 0 configure:27379: result: yes configure:27342: checking whether nearbyintl exists and is declared configure:27370: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27370: $? = 0 configure:27379: result: yes configure:27342: checking whether powl exists and is declared configure:27370: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27370: $? = 0 configure:27379: result: yes configure:27342: checking whether rint exists and is declared configure:27370: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27370: $? = 0 configure:27379: result: yes configure:27342: checking whether rintl exists and is declared configure:27370: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27370: $? = 0 configure:27379: result: yes configure:27393: checking whether va_copy exists and is declared configure:27421: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27421: $? = 0 configure:27430: result: yes configure:27446: checking for isblank configure:27446: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 conftest.c:140:6: warning: conflicting types for built-in function 'isblank' [-Wbuiltin-declaration-mismatch] char isblank (); ^~~~~~~ configure:27446: $? = 0 configure:27446: result: yes configure:27459: checking sunmath.h usability configure:27459: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c:151:10: fatal error: sunmath.h: No such file or directory #include ^~~~~~~~~~~ compilation terminated. configure:27459: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:27459: result: no configure:27459: checking sunmath.h presence configure:27459: gcc -E -I/usr/local/include conftest.c conftest.c:118:10: fatal error: sunmath.h: No such file or directory #include ^~~~~~~~~~~ compilation terminated. configure:27459: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | /* end confdefs.h. */ | #include configure:27459: result: no configure:27459: checking for sunmath.h configure:27459: result: no configure:27469: checking for cospi in -lsunmath configure:27502: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lsunmath -ldl -lm >&5 /usr/bin/ld: cannot find -lsunmath collect2: error: ld returned 1 exit status configure:27502: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cospi (); | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | return cospi (); | ; | return 0; | } configure:27511: result: no configure:27529: checking for atanpi configure:27529: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 /tmp/ccJWzXkw.o: In function `main': /bmlfast/bml_casp15/tools/casp14/casp14_qa/tools/R-3.2.0/conftest.c:152: undefined reference to `atanpi' collect2: error: ld returned 1 exit status configure:27529: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | /* end confdefs.h. */ | /* Define atanpi to an innocuous variant, in case declares atanpi. | For example, HP-UX 11i declares gettimeofday. */ | #define atanpi innocuous_atanpi | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char atanpi (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef atanpi | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char atanpi (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_atanpi || defined __stub___atanpi | choke me | #endif | | int | main () | { | return atanpi (); | ; | return 0; | } configure:27529: result: no configure:27529: checking for atan2pi configure:27529: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 /tmp/cc4QUIf8.o: In function `main': /bmlfast/bml_casp15/tools/casp14/casp14_qa/tools/R-3.2.0/conftest.c:152: undefined reference to `atan2pi' collect2: error: ld returned 1 exit status configure:27529: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | /* end confdefs.h. */ | /* Define atan2pi to an innocuous variant, in case declares atan2pi. | For example, HP-UX 11i declares gettimeofday. */ | #define atan2pi innocuous_atan2pi | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char atan2pi (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef atan2pi | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char atan2pi (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_atan2pi || defined __stub___atan2pi | choke me | #endif | | int | main () | { | return atan2pi (); | ; | return 0; | } configure:27529: result: no configure:27529: checking for cospi configure:27529: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 /tmp/ccMH0Txm.o: In function `main': /bmlfast/bml_casp15/tools/casp14/casp14_qa/tools/R-3.2.0/conftest.c:152: undefined reference to `cospi' collect2: error: ld returned 1 exit status configure:27529: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | /* end confdefs.h. */ | /* Define cospi to an innocuous variant, in case declares cospi. | For example, HP-UX 11i declares gettimeofday. */ | #define cospi innocuous_cospi | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char cospi (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef cospi | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cospi (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_cospi || defined __stub___cospi | choke me | #endif | | int | main () | { | return cospi (); | ; | return 0; | } configure:27529: result: no configure:27529: checking for exp10 configure:27529: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 conftest.c:141:6: warning: conflicting types for built-in function 'exp10' [-Wbuiltin-declaration-mismatch] char exp10 (); ^~~~~ configure:27529: $? = 0 configure:27529: result: yes configure:27529: checking for pown configure:27529: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 /tmp/ccQpnuN0.o: In function `main': /bmlfast/bml_casp15/tools/casp14/casp14_qa/tools/R-3.2.0/conftest.c:153: undefined reference to `pown' collect2: error: ld returned 1 exit status configure:27529: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | /* end confdefs.h. */ | /* Define pown to an innocuous variant, in case declares pown. | For example, HP-UX 11i declares gettimeofday. */ | #define pown innocuous_pown | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char pown (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef pown | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char pown (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_pown || defined __stub___pown | choke me | #endif | | int | main () | { | return pown (); | ; | return 0; | } configure:27529: result: no configure:27529: checking for sinpi configure:27529: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 /tmp/ccLsPmi8.o: In function `main': /bmlfast/bml_casp15/tools/casp14/casp14_qa/tools/R-3.2.0/conftest.c:153: undefined reference to `sinpi' collect2: error: ld returned 1 exit status configure:27529: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | /* end confdefs.h. */ | /* Define sinpi to an innocuous variant, in case declares sinpi. | For example, HP-UX 11i declares gettimeofday. */ | #define sinpi innocuous_sinpi | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char sinpi (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef sinpi | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char sinpi (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_sinpi || defined __stub___sinpi | choke me | #endif | | int | main () | { | return sinpi (); | ; | return 0; | } configure:27529: result: no configure:27529: checking for tanpi configure:27529: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 /tmp/cc8e4EeE.o: In function `main': /bmlfast/bml_casp15/tools/casp14/casp14_qa/tools/R-3.2.0/conftest.c:153: undefined reference to `tanpi' collect2: error: ld returned 1 exit status configure:27529: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | /* end confdefs.h. */ | /* Define tanpi to an innocuous variant, in case declares tanpi. | For example, HP-UX 11i declares gettimeofday. */ | #define tanpi innocuous_tanpi | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char tanpi (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef tanpi | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char tanpi (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_tanpi || defined __stub___tanpi | choke me | #endif | | int | main () | { | return tanpi (); | ; | return 0; | } configure:27529: result: no configure:27548: checking for fseeko configure:27548: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27548: $? = 0 configure:27548: result: yes configure:27548: checking for ftello configure:27548: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27548: $? = 0 configure:27548: result: yes configure:27548: checking for matherr configure:27548: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 /tmp/cc2Ot2Uk.o: In function `main': /bmlfast/bml_casp15/tools/casp14/casp14_qa/tools/R-3.2.0/conftest.c:155: undefined reference to `matherr' collect2: error: ld returned 1 exit status configure:27548: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | /* end confdefs.h. */ | /* Define matherr to an innocuous variant, in case declares matherr. | For example, HP-UX 11i declares gettimeofday. */ | #define matherr innocuous_matherr | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char matherr (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef matherr | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char matherr (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_matherr || defined __stub___matherr | choke me | #endif | | int | main () | { | return matherr (); | ; | return 0; | } configure:27548: result: no configure:27562: checking whether fcntl exists and is declared configure:27590: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27590: $? = 0 configure:27599: result: yes configure:27612: checking whether getgrgid exists and is declared configure:27640: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27640: $? = 0 configure:27649: result: yes configure:27662: checking whether getpwuid exists and is declared configure:27690: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27690: $? = 0 configure:27699: result: yes configure:27712: checking whether kill exists and is declared configure:27740: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27740: $? = 0 configure:27749: result: yes configure:27712: checking whether sigaction exists and is declared configure:27740: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27740: $? = 0 configure:27749: result: yes configure:27712: checking whether sigaltstack exists and is declared configure:27740: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27740: $? = 0 configure:27749: result: yes configure:27712: checking whether sigemptyset exists and is declared configure:27740: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27740: $? = 0 configure:27749: result: yes configure:27762: checking whether fdopen exists and is declared configure:27790: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27790: $? = 0 configure:27799: result: yes configure:27762: checking whether popen exists and is declared configure:27790: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27790: $? = 0 configure:27799: result: yes configure:27816: checking whether setenv exists and is declared configure:27844: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27844: $? = 0 configure:27853: result: yes configure:27816: checking whether unsetenv exists and is declared configure:27844: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27844: $? = 0 configure:27853: result: yes configure:27866: checking whether getrlimit exists and is declared configure:27894: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27894: $? = 0 configure:27903: result: yes configure:27866: checking whether getrusage exists and is declared configure:27894: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27894: $? = 0 configure:27903: result: yes configure:27866: checking whether getpriority exists and is declared configure:27894: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27894: $? = 0 configure:27903: result: yes configure:27916: checking whether chmod exists and is declared configure:27944: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27944: $? = 0 configure:27953: result: yes configure:27916: checking whether mkfifo exists and is declared configure:27944: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27944: $? = 0 configure:27953: result: yes configure:27916: checking whether stat exists and is declared configure:27944: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27944: $? = 0 configure:27953: result: yes configure:27916: checking whether umask exists and is declared configure:27944: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27944: $? = 0 configure:27953: result: yes configure:27969: checking whether gettimeofday exists and is declared configure:27997: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27997: $? = 0 configure:28006: result: yes configure:27969: checking whether utimes exists and is declared configure:27997: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:27997: $? = 0 configure:28006: result: yes configure:28019: checking whether times exists and is declared configure:28047: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28047: $? = 0 configure:28056: result: yes configure:28069: checking whether gmtime_r exists and is declared configure:28097: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28097: $? = 0 configure:28106: result: yes configure:28069: checking whether localtime_r exists and is declared configure:28097: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28097: $? = 0 configure:28106: result: yes configure:28119: checking whether nl_langinfo exists and is declared configure:28147: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28147: $? = 0 configure:28156: result: yes configure:28169: checking whether access exists and is declared configure:28199: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28199: $? = 0 configure:28208: result: yes configure:28169: checking whether chdir exists and is declared configure:28199: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28199: $? = 0 configure:28208: result: yes configure:28169: checking whether execv exists and is declared configure:28199: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28199: $? = 0 configure:28208: result: yes configure:28169: checking whether ftruncate exists and is declared configure:28199: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28199: $? = 0 configure:28208: result: yes configure:28169: checking whether getcwd exists and is declared configure:28199: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28199: $? = 0 configure:28208: result: yes configure:28169: checking whether geteuid exists and is declared configure:28199: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28199: $? = 0 configure:28208: result: yes configure:28169: checking whether getuid exists and is declared configure:28199: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28199: $? = 0 configure:28208: result: yes configure:28169: checking whether link exists and is declared configure:28199: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28199: $? = 0 configure:28208: result: yes configure:28169: checking whether readlink exists and is declared configure:28199: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28199: $? = 0 configure:28208: result: yes configure:28169: checking whether symlink exists and is declared configure:28199: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28199: $? = 0 configure:28208: result: yes configure:28169: checking whether sysconf exists and is declared configure:28199: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28199: $? = 0 configure:28208: result: yes configure:28222: checking whether sched_setaffinity exists and is declared configure:28250: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28250: $? = 0 configure:28259: result: yes configure:28222: checking whether sched_getaffinity exists and is declared configure:28250: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28250: $? = 0 configure:28259: result: yes configure:28273: checking whether utime exists and is declared configure:28301: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ldl -lm >&5 configure:28301: $? = 0 configure:28310: result: yes configure:28325: checking for clock_gettime in -lrt configure:28358: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28358: $? = 0 configure:28367: result: yes configure:28381: checking whether clock_gettime exists and is declared configure:28409: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28409: $? = 0 configure:28418: result: yes configure:28381: checking whether timespec_get exists and is declared configure:28409: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28409: $? = 0 configure:28418: result: yes configure:28433: checking for putenv configure:28433: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28433: $? = 0 configure:28433: result: yes configure:28442: checking whether putenv is declared configure:28442: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:28442: $? = 0 configure:28442: result: yes configure:28457: checking for vasprintf configure:28457: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28457: $? = 0 configure:28457: result: yes configure:28466: checking whether vasprintf is declared configure:28466: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:28466: $? = 0 configure:28466: result: yes configure:28481: checking for mempcpy configure:28481: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c:189:6: warning: conflicting types for built-in function 'mempcpy' [-Wbuiltin-declaration-mismatch] char mempcpy (); ^~~~~~~ configure:28481: $? = 0 configure:28481: result: yes configure:28494: checking for realpath configure:28494: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28494: $? = 0 configure:28494: result: yes configure:28503: checking whether realpath is declared configure:28503: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:28503: $? = 0 configure:28503: result: yes configure:28523: checking whether glob exists and is declared configure:28553: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28553: $? = 0 configure:28562: result: yes configure:28614: checking for isnan configure:28614: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c:194:6: warning: conflicting types for built-in function 'isnan' [-Wbuiltin-declaration-mismatch] char isnan (); ^~~~~ configure:28614: $? = 0 configure:28614: result: yes configure:28623: checking whether isfinite is declared configure:28623: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:28623: $? = 0 configure:28623: result: yes configure:28634: checking whether isnan is declared configure:28634: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:28634: $? = 0 configure:28634: result: yes configure:28646: checking whether you have IEEE 754 floating-point arithmetic configure:28658: result: yes configure:28671: checking whether putenv("FOO") can unset an environment variable configure:28701: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28701: $? = 0 configure:28701: ./conftest configure:28701: $? = 0 configure:28711: result: yes configure:28721: checking whether putenv("FOO=") can unset an environment variable configure:28751: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28751: $? = 0 configure:28751: ./conftest configure:28751: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | /* end confdefs.h. */ | | #include "confdefs.h" | #include | #include | int main() | { | char *p; | #ifdef HAVE_PUTENV | putenv("R_TEST=testit"); | p = getenv("R_TEST"); | if(!p) exit(10); | if(strcmp(p, "testit")) exit(11); | putenv("R_TEST="); | p = getenv("R_TEST"); | if(!p) exit(0); | #endif | exit(1); | } | configure:28761: result: no configure:28776: checking for nl_langinfo and CODESET configure:28800: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28800: $? = 0 configure:28809: result: yes configure:28846: checking for mkdtemp configure:28846: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28846: $? = 0 configure:28846: result: yes configure:28859: checking for strdup configure:28859: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c:201:6: warning: conflicting types for built-in function 'strdup' [-Wbuiltin-declaration-mismatch] char strdup (); ^~~~~~ configure:28859: $? = 0 configure:28859: result: yes configure:28872: checking for strncasecmp configure:28872: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c:202:6: warning: conflicting types for built-in function 'strncasecmp' [-Wbuiltin-declaration-mismatch] char strncasecmp (); ^~~~~~~~~~~ configure:28872: $? = 0 configure:28872: result: yes configure:28887: checking whether mkdtemp is declared configure:28887: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:28887: $? = 0 configure:28887: result: yes configure:28897: checking whether strdup is declared configure:28897: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:28897: $? = 0 configure:28897: result: yes configure:28907: checking whether strncasecmp is declared configure:28907: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:28907: $? = 0 configure:28907: result: yes configure:28919: checking for library containing connect configure:28958: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:28958: $? = 0 configure:28975: result: none required configure:28984: checking for library containing gethostbyname configure:29023: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29023: $? = 0 configure:29040: result: none required configure:29048: checking for library containing xdr_string configure:29087: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 /tmp/ccQ5DgML.o: In function `main': /bmlfast/bml_casp15/tools/casp14/casp14_qa/tools/R-3.2.0/conftest.c:202: undefined reference to `xdr_string' collect2: error: ld returned 1 exit status configure:29087: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char xdr_string (); | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | return xdr_string (); | ; | return 0; | } configure:29087: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lnsl -lrt -ldl -lm >&5 /usr/bin/ld: cannot find -lnsl collect2: error: ld returned 1 exit status configure:29087: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char xdr_string (); | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | return xdr_string (); | ; | return 0; | } configure:29087: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ltirpc -lrt -ldl -lm >&5 /usr/bin/ld: cannot find -ltirpc collect2: error: ld returned 1 exit status configure:29087: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char xdr_string (); | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | return xdr_string (); | ; | return 0; | } configure:29104: result: no configure:29112: checking for __setfpucw configure:29112: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 /tmp/cc75pwNL.o: In function `main': /bmlfast/bml_casp15/tools/casp14/casp14_qa/tools/R-3.2.0/conftest.c:217: undefined reference to `__setfpucw' collect2: error: ld returned 1 exit status configure:29112: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | /* end confdefs.h. */ | /* Define __setfpucw to an innocuous variant, in case declares __setfpucw. | For example, HP-UX 11i declares gettimeofday. */ | #define __setfpucw innocuous___setfpucw | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char __setfpucw (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef __setfpucw | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char __setfpucw (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub___setfpucw || defined __stub_____setfpucw | choke me | #endif | | int | main () | { | return __setfpucw (); | ; | return 0; | } configure:29112: result: no configure:29155: checking for working calloc configure:29173: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29173: $? = 0 configure:29173: ./conftest configure:29173: $? = 0 configure:29183: result: yes configure:29192: checking for working isfinite configure:29215: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29215: $? = 0 configure:29215: ./conftest configure:29215: $? = 0 configure:29225: result: yes configure:29235: checking for working log1p configure:29276: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29276: $? = 0 configure:29276: ./conftest configure:29276: $? = 0 configure:29286: result: yes configure:29298: checking whether ftell works correctly on files opened for append configure:29327: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c:190:1: warning: return type defaults to 'int' [-Wimplicit-int] main() { ^~~~ conftest.c: In function 'main': conftest.c:200:5: warning: implicit declaration of function 'unlink'; did you mean 'unix'? [-Wimplicit-function-declaration] unlink("testit"); ^~~~~~ unix configure:29327: $? = 0 configure:29327: ./conftest configure:29327: $? = 0 configure:29337: result: yes configure:29346: checking for working sigaction configure:29375: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29375: $? = 0 configure:29375: ./conftest configure:29375: $? = 0 configure:29385: result: yes configure:29402: checking whether mktime sets errno configure:29431: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29431: $? = 0 configure:29431: ./conftest configure:29431: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | /* end confdefs.h. */ | | #include | #include | #include | | int main() | { | struct tm tm; | /* It's hard to know what is an error, since mktime is allowed to | fix up times and there are 64-bit time_t about. | But this works for now (yes on Solaris, no on glibc). */ | tm.tm_year = 3000; tm.tm_mon = 0; tm.tm_mday = 0; | tm.tm_hour = 0; tm.tm_min = 0; tm.tm_sec = 0; tm.tm_isdst = -1; | errno = 0; | mktime(&tm); | exit(errno == 0); | } | configure:29441: result: no configure:29449: checking whether mktime works correctly outside 1902-2037 configure:29487: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c:192:1: warning: return type defaults to 'int' [-Wimplicit-int] main() { ^~~~ configure:29487: $? = 0 configure:29487: ./conftest configure:29487: $? = 0 configure:29497: result: yes configure:29507: checking complex.h usability configure:29507: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:29507: $? = 0 configure:29507: result: yes configure:29507: checking complex.h presence configure:29507: gcc -E -I/usr/local/include conftest.c configure:29507: $? = 0 configure:29507: result: yes configure:29507: checking for complex.h configure:29507: result: yes configure:29516: checking for double complex configure:29516: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:29516: $? = 0 configure:29516: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:194:29: error: expected expression before ')' token if (sizeof ((double complex))) ^ configure:29516: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | /* end confdefs.h. */ | #include | | int | main () | { | if (sizeof ((double complex))) | return 0; | ; | return 0; | } configure:29516: result: yes configure:29525: checking whether C99 double complex is supported configure:29527: result: yes configure:29536: checking whether cabs exists and is declared configure:29564: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29564: $? = 0 configure:29573: result: yes configure:29536: checking whether carg exists and is declared configure:29564: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29564: $? = 0 configure:29573: result: yes configure:29536: checking whether cexp exists and is declared configure:29564: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29564: $? = 0 configure:29573: result: yes configure:29536: checking whether clog exists and is declared configure:29564: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29564: $? = 0 configure:29573: result: yes configure:29536: checking whether csqrt exists and is declared configure:29564: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29564: $? = 0 configure:29573: result: yes configure:29536: checking whether cpow exists and is declared configure:29564: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29564: $? = 0 configure:29573: result: yes configure:29536: checking whether ccos exists and is declared configure:29564: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29564: $? = 0 configure:29573: result: yes configure:29536: checking whether csin exists and is declared configure:29564: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29564: $? = 0 configure:29573: result: yes configure:29536: checking whether ctan exists and is declared configure:29564: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29564: $? = 0 configure:29573: result: yes configure:29536: checking whether cacos exists and is declared configure:29564: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29564: $? = 0 configure:29573: result: yes configure:29536: checking whether casin exists and is declared configure:29564: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29564: $? = 0 configure:29573: result: yes configure:29536: checking whether catan exists and is declared configure:29564: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29564: $? = 0 configure:29573: result: yes configure:29536: checking whether ccosh exists and is declared configure:29564: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29564: $? = 0 configure:29573: result: yes configure:29536: checking whether csinh exists and is declared configure:29564: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29564: $? = 0 configure:29573: result: yes configure:29536: checking whether ctanh exists and is declared configure:29564: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:29564: $? = 0 configure:29573: result: yes configure:29586: checking whether 'struct tm' includes tm_zone configure:29604: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 In file included from /usr/include/time.h:25, from conftest.c:207: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ configure:29604: $? = 0 configure:29611: result: yes configure:29619: checking whether 'struct tm' includes tm_gmtoff configure:29638: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:29638: $? = 0 configure:29645: result: yes configure:30782: checking iconv.h usability configure:30782: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:30782: $? = 0 configure:30782: result: yes configure:30782: checking iconv.h presence configure:30782: gcc -E -I/usr/local/include conftest.c configure:30782: $? = 0 configure:30782: result: yes configure:30782: checking for iconv.h configure:30782: result: yes configure:30794: checking for iconv configure:30825: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:30825: $? = 0 configure:30868: result: yes configure:30875: checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*" configure:30943: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:30943: $? = 0 configure:30943: ./conftest configure:30943: $? = 0 configure:30953: result: yes configure:30967: checking for iconvlist configure:30998: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 conftest.c: In function 'main': conftest.c:225:1: warning: implicit declaration of function 'iconvlist'; did you mean 'iconv_close'? [-Wimplicit-function-declaration] iconvlist(count_one, NULL); ^~~~~~~~~ iconv_close /tmp/ccZCdCfc.o: In function `main': /bmlfast/bml_casp15/tools/casp14/casp14_qa/tools/R-3.2.0/conftest.c:225: undefined reference to `iconvlist' collect2: error: ld returned 1 exit status configure:30998: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_ICONV_H | #include | #endif | static int count_one (unsigned int namescount, char * *names, void *data) | {return 0;} | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | iconvlist(count_one, NULL); | ; | return 0; | } configure:31005: result: no configure:31041: checking for iconv configure:31071: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31071: $? = 0 configure:31111: result: yes configure:31132: checking for iconv declaration configure:31169: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:31169: $? = 0 configure:31180: result: extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); configure:31198: checking wchar.h usability configure:31198: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:31198: $? = 0 configure:31198: result: yes configure:31198: checking wchar.h presence configure:31198: gcc -E -I/usr/local/include conftest.c configure:31198: $? = 0 configure:31198: result: yes configure:31198: checking for wchar.h configure:31198: result: yes configure:31198: checking wctype.h usability configure:31198: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:31198: $? = 0 configure:31198: result: yes configure:31198: checking wctype.h presence configure:31198: gcc -E -I/usr/local/include conftest.c configure:31198: $? = 0 configure:31198: result: yes configure:31198: checking for wctype.h configure:31198: result: yes configure:31221: checking whether mbrtowc exists and is declared configure:31249: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31249: $? = 0 configure:31258: result: yes configure:31221: checking whether wcrtomb exists and is declared configure:31249: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31249: $? = 0 configure:31258: result: yes configure:31221: checking whether wcscoll exists and is declared configure:31249: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31249: $? = 0 configure:31258: result: yes configure:31221: checking whether wcsftime exists and is declared configure:31249: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31249: $? = 0 configure:31258: result: yes configure:31221: checking whether wcstod exists and is declared configure:31249: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31249: $? = 0 configure:31258: result: yes configure:31271: checking whether mbstowcs exists and is declared configure:31299: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31299: $? = 0 configure:31308: result: yes configure:31271: checking whether wcstombs exists and is declared configure:31299: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31299: $? = 0 configure:31308: result: yes configure:31321: checking whether wctrans exists and is declared configure:31350: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31350: $? = 0 configure:31359: result: yes configure:31321: checking whether iswblank exists and is declared configure:31350: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31350: $? = 0 configure:31359: result: yes configure:31321: checking whether wctype exists and is declared configure:31350: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31350: $? = 0 configure:31359: result: yes configure:31321: checking whether iswctype exists and is declared configure:31350: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm >&5 configure:31350: $? = 0 configure:31359: result: yes configure:31383: checking for wctrans_t configure:31383: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:31383: $? = 0 configure:31383: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:229:24: error: expected expression before ')' token if (sizeof ((wctrans_t))) ^ configure:31383: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | if (sizeof ((wctrans_t))) | return 0; | ; | return 0; | } configure:31383: result: yes configure:31394: checking for mbstate_t configure:31394: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:31394: $? = 0 configure:31394: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c: In function 'main': conftest.c:230:24: error: expected expression before ')' token if (sizeof ((mbstate_t))) ^ configure:31394: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | if (sizeof ((mbstate_t))) | return 0; | ; | return 0; | } configure:31394: result: yes configure:31420: checking for ICU configure:31455: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm -licuuc -licui18n >&5 configure:31455: $? = 0 configure:31455: ./conftest configure:31455: $? = 0 configure:31467: result: yes configure:31552: checking for X configure:31738: result: disabled configure:32409: result: using X11 ... no configure:32519: checking whether pkg-config knows about cairo and pango configure:32531: result: yes configure:32565: checking whether cairo including pango is >= 1.2 and works configure:32588: gcc -o conftest -g -O2 -I/usr/local/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -L/usr/local/lib64 conftest.c -lrt -ldl -lm -licuuc -licui18n -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo >&5 configure:32588: $? = 0 configure:32599: result: yes configure:32857: checking for tclConfig.sh configure:32890: result: no configure:32899: checking for tclConfig.sh in library (sub)directories configure:32920: result: no configure:32932: checking for tkConfig.sh configure:32965: result: no configure:32974: checking for tkConfig.sh in library (sub)directories configure:32995: result: no configure:33092: checking for tcl.h conftest.c:232:10: fatal error: tcl.h: No such file or directory #include ^~~~~~~ compilation terminated. configure:33116: result: no configure:33511: checking for BSD networking configure:33526: result: yes configure:33547: checking if jpeglib version >= 6b configure:33569: result: yes configure:33574: checking for jpeg_destroy_compress in -ljpeg configure:33607: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ljpeg -lrt -ldl -lm -licuuc -licui18n -lrt -ldl -lm -licuuc -licui18n >&5 configure:33607: $? = 0 configure:33616: result: yes configure:33633: checking for main in -lz configure:33660: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lz -lrt -ldl -lm -licuuc -licui18n >&5 configure:33660: $? = 0 configure:33669: result: yes configure:33678: checking if libpng version >= 1.2.7 configure:33700: result: yes configure:33706: checking for png_create_write_struct in -lpng configure:33739: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lpng -lz -lrt -ldl -lm -licuuc -licui18n -lrt -ldl -lm -licuuc -licui18n >&5 configure:33739: $? = 0 configure:33748: result: yes configure:33767: checking tiffio.h usability configure:33767: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:33767: $? = 0 configure:33767: result: yes configure:33767: checking tiffio.h presence configure:33767: gcc -E -I/usr/local/include conftest.c configure:33767: $? = 0 configure:33767: result: yes configure:33767: checking for tiffio.h configure:33767: result: yes configure:33779: checking for TIFFOpen in -ltiff configure:33812: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -ltiff -ljpeg -lpng -lz -lrt -ldl -lm -licuuc -licui18n >&5 configure:33812: $? = 0 configure:33821: result: yes configure:33902: checking rpc/types.h usability configure:33902: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c:273:10: fatal error: rpc/types.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated. configure:33902: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define USE_ICU 1 | #define X_DISPLAY_MISSING 1 | #define HAVE_PANGOCAIRO 1 | #define HAVE_WORKING_CAIRO 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_TIFFIO_H 1 | #define HAVE_TIFF 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:33902: result: no configure:33902: checking rpc/types.h presence configure:33902: gcc -E -I/usr/local/include conftest.c conftest.c:240:10: fatal error: rpc/types.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated. configure:33902: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define USE_ICU 1 | #define X_DISPLAY_MISSING 1 | #define HAVE_PANGOCAIRO 1 | #define HAVE_WORKING_CAIRO 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_TIFFIO_H 1 | #define HAVE_TIFF 1 | /* end confdefs.h. */ | #include configure:33902: result: no configure:33902: checking for rpc/types.h configure:33902: result: no configure:33930: checking tirpc/rpc/types.h usability configure:33930: gcc -c -g -O2 -I/usr/local/include -I/usr/include/tirpc conftest.c >&5 conftest.c:273:10: fatal error: tirpc/rpc/types.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~ compilation terminated. configure:33930: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define USE_ICU 1 | #define X_DISPLAY_MISSING 1 | #define HAVE_PANGOCAIRO 1 | #define HAVE_WORKING_CAIRO 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_TIFFIO_H 1 | #define HAVE_TIFF 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:33930: result: no configure:33930: checking tirpc/rpc/types.h presence configure:33930: gcc -E -I/usr/local/include -I/usr/include/tirpc conftest.c conftest.c:240:10: fatal error: tirpc/rpc/types.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~ compilation terminated. configure:33930: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define USE_ICU 1 | #define X_DISPLAY_MISSING 1 | #define HAVE_PANGOCAIRO 1 | #define HAVE_WORKING_CAIRO 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_TIFFIO_H 1 | #define HAVE_TIFF 1 | /* end confdefs.h. */ | #include configure:33930: result: no configure:33930: checking for tirpc/rpc/types.h configure:33930: result: no configure:33953: checking for XDR support configure:33955: result: no configure:33970: checking for inflateInit2_ in -lz configure:34003: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lz -lrt -ldl -lm -licuuc -licui18n >&5 configure:34003: $? = 0 configure:34012: result: yes configure:34021: checking zlib.h usability configure:34021: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:34021: $? = 0 configure:34021: result: yes configure:34021: checking zlib.h presence configure:34021: gcc -E -I/usr/local/include conftest.c configure:34021: $? = 0 configure:34021: result: yes configure:34021: checking for zlib.h configure:34021: result: yes configure:34031: checking if zlib version >= 1.2.5 configure:34056: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm -licuuc -licui18n >&5 configure:34056: $? = 0 configure:34056: ./conftest configure:34056: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define USE_ICU 1 | #define X_DISPLAY_MISSING 1 | #define HAVE_PANGOCAIRO 1 | #define HAVE_WORKING_CAIRO 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_TIFFIO_H 1 | #define HAVE_TIFF 1 | /* end confdefs.h. */ | | #include | #include | #include | int main() { | #ifdef ZLIB_VERSION | /* Work around Debian bug: it uses 1.2.3.4 even though there was no such | version on the master site zlib.net */ | exit(strncmp(ZLIB_VERSION, "1.2.5", 5) < 0); | #else | exit(1); | #endif | } | configure:34066: result: no configure:34074: checking whether zlib support needs to be compiled configure:34081: result: yes configure:34083: checking mmap support for zlib configure:34103: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lrt -ldl -lm -licuuc -licui18n >&5 conftest.c: In function 'hello': conftest.c:246:8: warning: passing argument 1 of 'exit' makes integer from pointer without a cast [-Wint-conversion] exit(mmap((caddr_t)0, (off_t)0, PROT_READ, MAP_SHARED, 0, (off_t)0)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from conftest.c:241: /usr/include/stdlib.h:614:23: note: expected 'int' but argument is of type 'void *' extern void exit (int __status) __THROW __attribute__ ((__noreturn__)); ~~~~^~~~~~~~ /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/crt1.o: In function `_start': (.text+0x24): undefined reference to `main' collect2: error: ld returned 1 exit status configure:34103: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define USE_ICU 1 | #define X_DISPLAY_MISSING 1 | #define HAVE_PANGOCAIRO 1 | #define HAVE_WORKING_CAIRO 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_TIFFIO_H 1 | #define HAVE_TIFF 1 | /* end confdefs.h. */ | | #include | #include | #include | #include | caddr_t hello() { | exit(mmap((caddr_t)0, (off_t)0, PROT_READ, MAP_SHARED, 0, (off_t)0)); | } | configure:34113: result: yes configure:34137: checking for BZ2_bzlibVersion in -lbz2 configure:34170: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:34170: $? = 0 configure:34179: result: yes configure:34190: checking bzlib.h usability configure:34190: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:34190: $? = 0 configure:34190: result: yes configure:34190: checking bzlib.h presence configure:34190: gcc -E -I/usr/local/include conftest.c configure:34190: $? = 0 configure:34190: result: yes configure:34190: checking for bzlib.h configure:34190: result: yes configure:34207: checking if bzip2 version >= 1.0.6 configure:34235: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 conftest.c: In function 'main': conftest.c:246:17: warning: initialization discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] char *ver = BZ2_bzlibVersion(); ^~~~~~~~~~~~~~~~ conftest.c:247:5: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration] exit(strcmp(ver, "1.0.6") < 0); ^~~~ conftest.c:247:5: warning: incompatible implicit declaration of built-in function 'exit' conftest.c:247:5: note: include '' or provide a declaration of 'exit' conftest.c:244:1: +#include #endif conftest.c:247:5: exit(strcmp(ver, "1.0.6") < 0); ^~~~ conftest.c:247:10: warning: implicit declaration of function 'strcmp' [-Wimplicit-function-declaration] exit(strcmp(ver, "1.0.6") < 0); ^~~~~~ configure:34235: $? = 0 configure:34235: ./conftest configure:34235: $? = 0 configure:34252: result: yes configure:34258: checking whether bzip2 support needs to be compiled configure:34261: result: no configure:34280: checking for lzma_version_number in -llzma configure:34313: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:34313: $? = 0 configure:34322: result: yes configure:34333: checking lzma.h usability configure:34333: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:34333: $? = 0 configure:34333: result: yes configure:34333: checking lzma.h presence configure:34333: gcc -E -I/usr/local/include conftest.c configure:34333: $? = 0 configure:34333: result: yes configure:34333: checking for lzma.h configure:34333: result: yes configure:34347: checking if lzma version >= 5.0.3 configure:34378: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:34378: $? = 0 configure:34378: ./conftest configure:34378: $? = 0 configure:34395: result: yes configure:34422: checking for pcre_fullinfo in -lpcre configure:34455: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:34455: $? = 0 configure:34464: result: yes configure:34476: checking pcre.h usability configure:34476: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 configure:34476: $? = 0 configure:34476: result: yes configure:34476: checking pcre.h presence configure:34476: gcc -E -I/usr/local/include conftest.c configure:34476: $? = 0 configure:34476: result: yes configure:34476: checking for pcre.h configure:34476: result: yes configure:34476: checking pcre/pcre.h usability configure:34476: gcc -c -g -O2 -I/usr/local/include conftest.c >&5 conftest.c:277:10: fatal error: pcre/pcre.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated. configure:34476: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define USE_ICU 1 | #define X_DISPLAY_MISSING 1 | #define HAVE_PANGOCAIRO 1 | #define HAVE_WORKING_CAIRO 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_TIFFIO_H 1 | #define HAVE_TIFF 1 | #define HAVE_BZLIB_H 1 | #define HAVE_LZMA_H 1 | #define HAVE_LZMA 1 | #define HAVE_PCRE_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:34476: result: no configure:34476: checking pcre/pcre.h presence configure:34476: gcc -E -I/usr/local/include conftest.c conftest.c:244:10: fatal error: pcre/pcre.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated. configure:34476: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define USE_ICU 1 | #define X_DISPLAY_MISSING 1 | #define HAVE_PANGOCAIRO 1 | #define HAVE_WORKING_CAIRO 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_TIFFIO_H 1 | #define HAVE_TIFF 1 | #define HAVE_BZLIB_H 1 | #define HAVE_LZMA_H 1 | #define HAVE_LZMA 1 | #define HAVE_PCRE_H 1 | /* end confdefs.h. */ | #include configure:34476: result: no configure:34476: checking for pcre/pcre.h configure:34476: result: no configure:34497: checking if PCRE version >= 8.10, < 10.0 and has UTF-8 support configure:34534: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:34534: $? = 0 configure:34534: ./conftest configure:34534: $? = 0 configure:34544: result: yes configure:34551: checking whether PCRE support needs to be compiled configure:34554: result: no configure:34663: checking for curl-config configure:34696: result: no configure:34716: checking if libcurl version >= 7.28.0 configure:34745: gcc -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 conftest.c:246:10: fatal error: curl/curl.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated. configure:34745: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define USE_ICU 1 | #define X_DISPLAY_MISSING 1 | #define HAVE_PANGOCAIRO 1 | #define HAVE_WORKING_CAIRO 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_TIFFIO_H 1 | #define HAVE_TIFF 1 | #define HAVE_BZLIB_H 1 | #define HAVE_LZMA_H 1 | #define HAVE_LZMA 1 | #define HAVE_PCRE_H 1 | /* end confdefs.h. */ | | #include | #include | int main() | { | #ifdef LIBCURL_VERSION_MAJOR | #if LIBCURL_VERSION_MAJOR > 7 | exit(1); | #elif LIBCURL_VERSION_MAJOR == 7 && LIBCURL_VERSION_MINOR >= 28 | exit(0); | #else | exit(1); | #endif | #else | exit(1); | #endif | } | configure:34755: result: no configure:34781: checking whether leap seconds are treated according to POSIX configure:34808: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:34808: $? = 0 configure:34808: ./conftest configure:34808: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define USE_ICU 1 | #define X_DISPLAY_MISSING 1 | #define HAVE_PANGOCAIRO 1 | #define HAVE_WORKING_CAIRO 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_TIFFIO_H 1 | #define HAVE_TIFF 1 | #define HAVE_BZLIB_H 1 | #define HAVE_LZMA_H 1 | #define HAVE_LZMA 1 | #define HAVE_PCRE_H 1 | /* end confdefs.h. */ | | #include | #include | #include | #include "confdefs.h" | | int main () { | struct tm *tm; | time_t ct = 0; /* required on 64bit AIX */ | | ctime(&ct); | ct = ct - (ct % 60); | tm = gmtime(&ct); | if(tm->tm_sec == 0) exit(1); else exit(0); | } | configure:34818: result: yes configure:34828: checking for inline configure:34844: gcc -c -g -O2 conftest.c >&5 configure:34844: $? = 0 configure:34852: result: inline configure:34876: checking for sys/time.h configure:34876: result: yes configure:34876: checking for stdlib.h configure:34876: result: yes configure:34876: checking for unistd.h configure:34876: result: yes configure:34876: checking for sys/param.h configure:34876: result: yes configure:34893: checking for struct stat.st_atim.tv_nsec configure:34893: gcc -c -g -O2 conftest.c >&5 configure:34893: $? = 0 configure:34893: result: yes configure:34902: checking whether struct stat.st_atim is of type struct timespec configure:34937: gcc -c -g -O2 conftest.c >&5 configure:34937: $? = 0 configure:34944: result: yes configure:34998: checking for setitimer configure:34998: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:34998: $? = 0 configure:34998: result: yes configure:35029: checking for special C compiler options needed for large files configure:35082: result: no configure:35088: checking for _FILE_OFFSET_BITS value needed for large files configure:35121: gcc -c -g -O2 conftest.c >&5 configure:35121: $? = 0 configure:35161: result: no configure:35262: checking for _LARGEFILE_SOURCE value needed for large files configure:35289: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:35289: $? = 0 configure:35325: result: no configure:35391: checking whether KERN_USRSTACK sysctl is supported configure:35418: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 conftest.c: In function 'main': conftest.c:264:26: error: 'KERN_USRSTACK' undeclared (first use in this function); did you mean 'KERN_SHMPATH'? int nm[2] = {CTL_KERN, KERN_USRSTACK}; ^~~~~~~~~~~~~ KERN_SHMPATH conftest.c:264:26: note: each undeclared identifier is reported only once for each function it appears in configure:35418: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define USE_ICU 1 | #define X_DISPLAY_MISSING 1 | #define HAVE_PANGOCAIRO 1 | #define HAVE_WORKING_CAIRO 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_TIFFIO_H 1 | #define HAVE_TIFF 1 | #define HAVE_BZLIB_H 1 | #define HAVE_LZMA_H 1 | #define HAVE_LZMA 1 | #define HAVE_PCRE_H 1 | #define HAVE_POSIX_LEAPSECONDS 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | #define HAVE_SETITIMER 1 | #define R_PROFILING 1 | #define HAVE_FSEEKO 1 | #define NVALGRIND 1 | #define VALGRIND_LEVEL 0 | /* end confdefs.h. */ | | #include "confdefs.h" | #include | #include | #include | #include | | int main () { | int nm[2] = {CTL_KERN, KERN_USRSTACK}; | void * base; | size_t len = sizeof(void *); | int r = sysctl(nm, 2, &base, &len, NULL, 0); | | exit((r==0)?0:1); | } | configure:35428: result: no configure:35441: checking for visible __lib_stack_end configure:35461: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:35461: $? = 0 configure:35461: ./conftest configure:35461: $? = 0 configure:35471: result: yes configure:35491: checking for lpr configure:35507: found /usr/bin/lpr configure:35518: result: lpr configure:35539: checking for paperconf configure:35557: found /usr/bin/paperconf configure:35570: result: /usr/bin/paperconf configure:35665: checking for gfortran configure:35681: found /usr/bin/gfortran configure:35692: result: gfortran configure:35718: checking for Fortran compiler version configure:35727: gfortran --version >&5 GNU Fortran (GCC) 8.5.0 20210514 (Red Hat 8.5.0-20) Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:35738: $? = 0 configure:35727: gfortran -v >&5 Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugs.almalinux.org/ --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 8.5.0 20210514 (Red Hat 8.5.0-20) (GCC) configure:35738: $? = 0 configure:35727: gfortran -V >&5 gfortran: error: unrecognized command line option '-V' gfortran: fatal error: no input files compilation terminated. configure:35738: $? = 1 configure:35727: gfortran -qversion >&5 gfortran: error: unrecognized command line option '-qversion'; did you mean '--version'? gfortran: fatal error: no input files compilation terminated. configure:35738: $? = 1 configure:35747: checking whether we are using the GNU Fortran compiler configure:35760: gfortran -c conftest.F >&5 configure:35760: $? = 0 configure:35769: result: yes configure:35775: checking whether gfortran accepts -g configure:35786: gfortran -c -g conftest.f >&5 configure:35786: $? = 0 configure:35794: result: yes configure:35930: checking for Fortran compiler version configure:35939: gfortran --version >&5 GNU Fortran (GCC) 8.5.0 20210514 (Red Hat 8.5.0-20) Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:35950: $? = 0 configure:35939: gfortran -v >&5 Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugs.almalinux.org/ --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 8.5.0 20210514 (Red Hat 8.5.0-20) (GCC) configure:35950: $? = 0 configure:35939: gfortran -V >&5 gfortran: error: unrecognized command line option '-V' gfortran: fatal error: no input files compilation terminated. configure:35950: $? = 1 configure:35939: gfortran -qversion >&5 gfortran: error: unrecognized command line option '-qversion'; did you mean '--version'? gfortran: fatal error: no input files compilation terminated. configure:35950: $? = 1 configure:35959: checking whether we are using the GNU Fortran compiler configure:35981: result: yes configure:35987: checking whether gfortran accepts -g configure:36006: result: yes configure:36144: checking if libtool supports shared libraries configure:36146: result: yes configure:36149: checking whether to build shared libraries configure:36169: result: yes configure:36172: checking whether to build static libraries configure:36176: result: no configure:36202: gfortran -c -g -O2 conftest.f >&5 configure:36205: $? = 0 configure:36315: checking for gfortran option to produce PIC configure:36587: result: -fPIC configure:36596: checking if gfortran PIC flag -fPIC works configure:36614: gfortran -c -g -O2 -fPIC conftest.f >&5 configure:36618: $? = 0 configure:36631: result: yes configure:36652: checking if gfortran static flag -static works configure:36680: result: no configure:36692: checking if gfortran supports -c -o file.o configure:36713: gfortran -c -g -O2 -o out/conftest2.o conftest.f >&5 configure:36717: $? = 0 configure:36739: result: yes configure:36744: checking if gfortran supports -c -o file.o configure:36791: result: yes configure:36821: checking whether the gfortran linker (/usr/bin/ld) supports shared libraries configure:37794: result: yes configure:37931: checking dynamic linker characteristics configure:38306: gfortran -o conftest -g -O2 -L/usr/local/lib64 -Wl,-rpath -Wl,/foo conftest.f -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:38306: $? = 0 configure:38524: result: GNU/Linux ld.so configure:38575: checking how to hardcode library paths into programs configure:38600: result: immediate configure:38641: checking for Fortran flag to compile .f90 files configure:38661: gfortran -c -g -O2 conftest.f90 >&5 configure:38661: $? = 0 configure:38670: result: none configure:38695: checking for Fortran flag to compile .f95 files configure:38715: gfortran -c -g -O2 conftest.f95 >&5 configure:38715: $? = 0 configure:38724: result: none configure:38753: checking for gfortran option to support OpenMP configure:38768: gfortran -o conftest -g -O2 -L/usr/local/lib64 conftest.f95 -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 conftest.f95:5:9: tid = 42 1 Error: Symbol 'tid' at (1) has no IMPLICIT type configure:38768: $? = 1 configure: failed program was: | | program main | implicit none | !$ integer tid | tid = 42 | call omp_set_num_threads(2) | end | configure:38786: gfortran -o conftest -g -O2 -fopenmp -L/usr/local/lib64 conftest.f95 -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:38786: $? = 0 configure:38800: result: -fopenmp configure:39011: checking for recommended packages configure:39027: result: yes configure:39047: checking whether NLS is requested configure:39056: result: yes configure:39064: checking for a thread-safe mkdir -p configure:39103: result: /usr/bin/mkdir -p configure:39114: checking whether we are using the GNU C Library 2 or newer configure:39141: result: yes configure:39190: checking for ranlib configure:39217: result: ranlib configure:39244: checking for simple visibility declarations configure:39274: gcc -c -g -O2 -fvisibility=hidden conftest.c >&5 configure:39274: $? = 0 configure:39283: result: yes configure:39299: checking for stdint.h configure:39324: gcc -c -g -O2 conftest.c >&5 configure:39324: $? = 0 configure:39331: result: yes configure:39350: checking for getpagesize configure:39350: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:39350: $? = 0 configure:39350: result: yes configure:39359: checking for working mmap configure:39506: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:39506: $? = 0 configure:39506: ./conftest configure:39506: $? = 0 configure:39516: result: yes configure:39527: checking whether integer division by zero raises SIGFPE configure:39584: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 conftest.c:281:5: warning: built-in function 'nan' declared as non-function [-Wbuiltin-declaration-mismatch] int nan; ^~~ configure:39584: $? = 0 configure:39584: ./conftest configure:39584: $? = 0 configure:39595: result: yes configure:39608: checking for inttypes.h configure:39633: gcc -c -g -O2 conftest.c >&5 configure:39633: $? = 0 configure:39640: result: yes configure:39651: checking for unsigned long long int configure:39680: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:39680: $? = 0 configure:39688: result: yes configure:39727: checking for inttypes.h configure:39727: result: yes configure:39738: checking whether the inttypes.h PRIxNN macros are broken configure:39767: gcc -c -g -O2 conftest.c >&5 configure:39767: $? = 0 configure:39775: result: no configure:39851: checking whether imported symbols can be declared weak configure:39874: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:39874: $? = 0 configure:39879: result: yes configure:40697: checking for multithread API to use configure:40699: result: none configure:40735: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:40735: $? = 0 configure:40746: checking argz.h usability configure:40746: gcc -c -g -O2 conftest.c >&5 configure:40746: $? = 0 configure:40746: result: yes configure:40746: checking argz.h presence configure:40746: gcc -E conftest.c configure:40746: $? = 0 configure:40746: result: yes configure:40746: checking for argz.h configure:40746: result: yes configure:40746: checking for inttypes.h configure:40746: result: yes configure:40746: checking for limits.h configure:40746: result: yes configure:40746: checking for unistd.h configure:40746: result: yes configure:40746: checking for sys/param.h configure:40746: result: yes configure:40761: checking for getcwd configure:40761: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:40761: $? = 0 configure:40761: result: yes configure:40761: checking for getegid configure:40761: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:40761: $? = 0 configure:40761: result: yes configure:40761: checking for geteuid configure:40761: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:40761: $? = 0 configure:40761: result: yes configure:40761: checking for getgid configure:40761: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:40761: $? = 0 configure:40761: result: yes configure:40761: checking for getuid configure:40761: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:40761: $? = 0 configure:40761: result: yes configure:40761: checking for mempcpy configure:40761: result: yes configure:40761: checking for munmap configure:40761: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:40761: $? = 0 configure:40761: result: yes configure:40761: checking for stpcpy configure:40761: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 conftest.c:305:6: warning: conflicting types for built-in function 'stpcpy' [-Wbuiltin-declaration-mismatch] char stpcpy (); ^~~~~~ configure:40761: $? = 0 configure:40761: result: yes configure:40761: checking for strcasecmp configure:40761: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 conftest.c:306:6: warning: conflicting types for built-in function 'strcasecmp' [-Wbuiltin-declaration-mismatch] char strcasecmp (); ^~~~~~~~~~ configure:40761: $? = 0 configure:40761: result: yes configure:40761: checking for strdup configure:40761: result: yes configure:40761: checking for strtoul configure:40761: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:40761: $? = 0 configure:40761: result: yes configure:40761: checking for tsearch configure:40761: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:40761: $? = 0 configure:40761: result: yes configure:40761: checking for argz_count configure:40761: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:40761: $? = 0 configure:40761: result: yes configure:40761: checking for argz_stringify configure:40761: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:40761: $? = 0 configure:40761: result: yes configure:40761: checking for argz_next configure:40761: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:40761: $? = 0 configure:40761: result: yes configure:40761: checking for __fsetlocking configure:40761: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:40761: $? = 0 configure:40761: result: yes configure:40772: checking whether feof_unlocked is declared configure:40800: gcc -c -g -O2 conftest.c >&5 configure:40800: $? = 0 configure:40807: result: yes configure:40821: checking whether fgets_unlocked is declared configure:40849: gcc -c -g -O2 conftest.c >&5 configure:40849: $? = 0 configure:40856: result: yes configure:40899: checking for iconv configure:40969: result: yes configure:40990: checking for iconv declaration configure:41038: result: extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); configure:41049: checking for NL_LOCALE_NAME macro configure:41074: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:41074: $? = 0 configure:41083: result: yes configure:41095: checking for bison configure:41111: found /usr/bin/bison configure:41122: result: bison configure:41136: checking version of bison configure:41145: result: 3.0.4, ok configure:41153: checking for long long int configure:41184: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:41184: $? = 0 configure:41192: result: yes configure:41201: checking for long double configure:41241: result: yes configure:41245: checking for wchar_t configure:41270: gcc -c -g -O2 conftest.c >&5 configure:41270: $? = 0 configure:41277: result: yes configure:41286: checking for wint_t configure:41311: gcc -c -g -O2 conftest.c >&5 configure:41311: $? = 0 configure:41318: result: yes configure:41329: checking for intmax_t configure:41363: gcc -c -g -O2 conftest.c >&5 configure:41363: $? = 0 configure:41370: result: yes configure:41380: checking whether printf() supports POSIX/XSI format strings configure:41421: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:41421: $? = 0 configure:41421: ./conftest configure:41421: $? = 0 configure:41432: result: yes configure:41443: checking whether we are using the GNU C Library 2.1 or newer configure:41470: result: yes configure:41479: checking for stdint.h configure:41479: result: yes configure:41489: checking for SIZE_MAX configure:41571: result: yes configure:41586: checking for stdint.h configure:41586: result: yes configure:41598: checking for CFPreferencesCopyAppValue configure:41624: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n -Wl,-framework -Wl,CoreFoundation >&5 conftest.c:303:10: fatal error: CoreFoundation/CFPreferences.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ compilation terminated. configure:41624: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define USE_ICU 1 | #define X_DISPLAY_MISSING 1 | #define HAVE_PANGOCAIRO 1 | #define HAVE_WORKING_CAIRO 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_TIFFIO_H 1 | #define HAVE_TIFF 1 | #define HAVE_BZLIB_H 1 | #define HAVE_LZMA_H 1 | #define HAVE_LZMA 1 | #define HAVE_PCRE_H 1 | #define HAVE_POSIX_LEAPSECONDS 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | #define HAVE_SETITIMER 1 | #define R_PROFILING 1 | #define HAVE_FSEEKO 1 | #define NVALGRIND 1 | #define VALGRIND_LEVEL 0 | #define HAVE_LIBC_STACK_END 1 | #define R_PRINTCMD "lpr" | #define SUPPORT_OPENMP 1 | #define HAVE_VISIBILITY 1 | #define HAVE_STDINT_H_WITH_UINTMAX 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define INTDIV0_RAISES_SIGFPE 1 | #define HAVE_INTTYPES_H_WITH_UINTMAX 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG 1 | #define HAVE_UINTMAX_T 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_ARGZ_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEGID 1 | #define HAVE_GETEUID 1 | #define HAVE_GETGID 1 | #define HAVE_GETUID 1 | #define HAVE_MEMPCPY 1 | #define HAVE_MUNMAP 1 | #define HAVE_STPCPY 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRTOUL 1 | #define HAVE_TSEARCH 1 | #define HAVE_ARGZ_COUNT 1 | #define HAVE_ARGZ_STRINGIFY 1 | #define HAVE_ARGZ_NEXT 1 | #define HAVE___FSETLOCKING 1 | #define HAVE_DECL_FEOF_UNLOCKED 1 | #define HAVE_DECL_FGETS_UNLOCKED 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_NL_LOCALE_NAME 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_WCHAR_T 1 | #define HAVE_WINT_T 1 | #define HAVE_INTMAX_T 1 | #define HAVE_POSIX_PRINTF 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | CFPreferencesCopyAppValue(NULL, NULL) | ; | return 0; | } configure:41633: result: no configure:41640: checking for CFLocaleCopyCurrent configure:41666: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n -Wl,-framework -Wl,CoreFoundation >&5 conftest.c:303:10: fatal error: CoreFoundation/CFLocale.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~~~~~~~~~ compilation terminated. configure:41666: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define USE_ICU 1 | #define X_DISPLAY_MISSING 1 | #define HAVE_PANGOCAIRO 1 | #define HAVE_WORKING_CAIRO 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_TIFFIO_H 1 | #define HAVE_TIFF 1 | #define HAVE_BZLIB_H 1 | #define HAVE_LZMA_H 1 | #define HAVE_LZMA 1 | #define HAVE_PCRE_H 1 | #define HAVE_POSIX_LEAPSECONDS 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | #define HAVE_SETITIMER 1 | #define R_PROFILING 1 | #define HAVE_FSEEKO 1 | #define NVALGRIND 1 | #define VALGRIND_LEVEL 0 | #define HAVE_LIBC_STACK_END 1 | #define R_PRINTCMD "lpr" | #define SUPPORT_OPENMP 1 | #define HAVE_VISIBILITY 1 | #define HAVE_STDINT_H_WITH_UINTMAX 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define INTDIV0_RAISES_SIGFPE 1 | #define HAVE_INTTYPES_H_WITH_UINTMAX 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG 1 | #define HAVE_UINTMAX_T 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_ARGZ_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEGID 1 | #define HAVE_GETEUID 1 | #define HAVE_GETGID 1 | #define HAVE_GETUID 1 | #define HAVE_MEMPCPY 1 | #define HAVE_MUNMAP 1 | #define HAVE_STPCPY 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRTOUL 1 | #define HAVE_TSEARCH 1 | #define HAVE_ARGZ_COUNT 1 | #define HAVE_ARGZ_STRINGIFY 1 | #define HAVE_ARGZ_NEXT 1 | #define HAVE___FSETLOCKING 1 | #define HAVE_DECL_FEOF_UNLOCKED 1 | #define HAVE_DECL_FGETS_UNLOCKED 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_NL_LOCALE_NAME 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_WCHAR_T 1 | #define HAVE_WINT_T 1 | #define HAVE_INTMAX_T 1 | #define HAVE_POSIX_PRINTF 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | CFLocaleCopyCurrent(); | ; | return 0; | } configure:41675: result: no configure:41693: checking for ptrdiff_t configure:41693: gcc -c -g -O2 conftest.c >&5 configure:41693: $? = 0 configure:41693: gcc -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:339:24: error: expected expression before ')' token if (sizeof ((ptrdiff_t))) ^ configure:41693: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define USE_ICU 1 | #define X_DISPLAY_MISSING 1 | #define HAVE_PANGOCAIRO 1 | #define HAVE_WORKING_CAIRO 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_TIFFIO_H 1 | #define HAVE_TIFF 1 | #define HAVE_BZLIB_H 1 | #define HAVE_LZMA_H 1 | #define HAVE_LZMA 1 | #define HAVE_PCRE_H 1 | #define HAVE_POSIX_LEAPSECONDS 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | #define HAVE_SETITIMER 1 | #define R_PROFILING 1 | #define HAVE_FSEEKO 1 | #define NVALGRIND 1 | #define VALGRIND_LEVEL 0 | #define HAVE_LIBC_STACK_END 1 | #define R_PRINTCMD "lpr" | #define SUPPORT_OPENMP 1 | #define HAVE_VISIBILITY 1 | #define HAVE_STDINT_H_WITH_UINTMAX 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define INTDIV0_RAISES_SIGFPE 1 | #define HAVE_INTTYPES_H_WITH_UINTMAX 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG 1 | #define HAVE_UINTMAX_T 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_ARGZ_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEGID 1 | #define HAVE_GETEUID 1 | #define HAVE_GETGID 1 | #define HAVE_GETUID 1 | #define HAVE_MEMPCPY 1 | #define HAVE_MUNMAP 1 | #define HAVE_STPCPY 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRTOUL 1 | #define HAVE_TSEARCH 1 | #define HAVE_ARGZ_COUNT 1 | #define HAVE_ARGZ_STRINGIFY 1 | #define HAVE_ARGZ_NEXT 1 | #define HAVE___FSETLOCKING 1 | #define HAVE_DECL_FEOF_UNLOCKED 1 | #define HAVE_DECL_FGETS_UNLOCKED 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_NL_LOCALE_NAME 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_WCHAR_T 1 | #define HAVE_WINT_T 1 | #define HAVE_INTMAX_T 1 | #define HAVE_POSIX_PRINTF 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((ptrdiff_t))) | return 0; | ; | return 0; | } configure:41693: result: yes configure:41706: checking stddef.h usability configure:41706: gcc -c -g -O2 conftest.c >&5 configure:41706: $? = 0 configure:41706: result: yes configure:41706: checking stddef.h presence configure:41706: gcc -E conftest.c configure:41706: $? = 0 configure:41706: result: yes configure:41706: checking for stddef.h configure:41706: result: yes configure:41706: checking for stdlib.h configure:41706: result: yes configure:41706: checking for string.h configure:41706: result: yes configure:41719: checking for asprintf configure:41719: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:41719: $? = 0 configure:41719: result: yes configure:41719: checking for fwprintf configure:41719: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:41719: $? = 0 configure:41719: result: yes configure:41719: checking for putenv configure:41719: result: yes configure:41719: checking for setenv configure:41719: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:41719: $? = 0 configure:41719: result: yes configure:41719: checking for setlocale configure:41719: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:41719: $? = 0 configure:41719: result: yes configure:41719: checking for snprintf configure:41719: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 conftest.c:334:6: warning: conflicting types for built-in function 'snprintf' [-Wbuiltin-declaration-mismatch] char snprintf (); ^~~~~~~~ configure:41719: $? = 0 configure:41719: result: yes configure:41719: checking for wcslen configure:41719: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:41719: $? = 0 configure:41719: result: yes configure:41730: checking whether _snprintf is declared configure:41758: gcc -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:327:22: error: '_snprintf' undeclared (first use in this function); did you mean 'vsnprintf'? char *p = (char *) _snprintf; ^~~~~~~~~ vsnprintf conftest.c:327:22: note: each undeclared identifier is reported only once for each function it appears in configure:41758: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define USE_ICU 1 | #define X_DISPLAY_MISSING 1 | #define HAVE_PANGOCAIRO 1 | #define HAVE_WORKING_CAIRO 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_TIFFIO_H 1 | #define HAVE_TIFF 1 | #define HAVE_BZLIB_H 1 | #define HAVE_LZMA_H 1 | #define HAVE_LZMA 1 | #define HAVE_PCRE_H 1 | #define HAVE_POSIX_LEAPSECONDS 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | #define HAVE_SETITIMER 1 | #define R_PROFILING 1 | #define HAVE_FSEEKO 1 | #define NVALGRIND 1 | #define VALGRIND_LEVEL 0 | #define HAVE_LIBC_STACK_END 1 | #define R_PRINTCMD "lpr" | #define SUPPORT_OPENMP 1 | #define HAVE_VISIBILITY 1 | #define HAVE_STDINT_H_WITH_UINTMAX 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define INTDIV0_RAISES_SIGFPE 1 | #define HAVE_INTTYPES_H_WITH_UINTMAX 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG 1 | #define HAVE_UINTMAX_T 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_ARGZ_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEGID 1 | #define HAVE_GETEUID 1 | #define HAVE_GETGID 1 | #define HAVE_GETUID 1 | #define HAVE_MEMPCPY 1 | #define HAVE_MUNMAP 1 | #define HAVE_STPCPY 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRTOUL 1 | #define HAVE_TSEARCH 1 | #define HAVE_ARGZ_COUNT 1 | #define HAVE_ARGZ_STRINGIFY 1 | #define HAVE_ARGZ_NEXT 1 | #define HAVE___FSETLOCKING 1 | #define HAVE_DECL_FEOF_UNLOCKED 1 | #define HAVE_DECL_FGETS_UNLOCKED 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_NL_LOCALE_NAME 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_WCHAR_T 1 | #define HAVE_WINT_T 1 | #define HAVE_INTMAX_T 1 | #define HAVE_POSIX_PRINTF 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_ASPRINTF 1 | #define HAVE_FWPRINTF 1 | #define HAVE_PUTENV 1 | #define HAVE_SETENV 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SNPRINTF 1 | #define HAVE_WCSLEN 1 | /* end confdefs.h. */ | #include | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | | #ifndef _snprintf | char *p = (char *) _snprintf; | #endif | | ; | return 0; | } configure:41765: result: no configure:41779: checking whether _snwprintf is declared configure:41807: gcc -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:328:22: error: '_snwprintf' undeclared (first use in this function); did you mean 'vsnprintf'? char *p = (char *) _snwprintf; ^~~~~~~~~~ vsnprintf conftest.c:328:22: note: each undeclared identifier is reported only once for each function it appears in configure:41807: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "R" | #define PACKAGE_TARNAME "R" | #define PACKAGE_VERSION "3.2.0" | #define PACKAGE_STRING "R 3.2.0" | #define PACKAGE_BUGREPORT "https://bugs.r-project.org" | #define PACKAGE_URL "https://www.r-project.org" | #define PACKAGE "R" | #define VERSION "3.2.0" | #define R_PLATFORM "x86_64-unknown-linux-gnu" | #define R_CPU "x86_64" | #define R_VENDOR "unknown" | #define R_OS "linux-gnu" | #define Unix 1 | #define R_ARCH "" | #define HAVE_VISIBILITY_ATTRIBUTE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define __EXTENSIONS__ 1 | #define _ALL_SOURCE 1 | #define _GNU_SOURCE 1 | #define _POSIX_PTHREAD_SEMANTICS 1 | #define _TANDEM_SOURCE 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define HAVE_LIBDL 1 | #define STDC_HEADERS 1 | #define HAVE_DIRENT_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_ELF_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FPU_CONTROL_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_GRP_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_PWD_H 1 | #define HAVE_SCHED_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_SYS_UTSNAME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_UTIME_H 1 | #define HAVE_STDALIGN_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRING_H 1 | #define HAVE_DECL_SIGSETJMP 1 | #define HAVE_DECL_SIGLONGJMP 1 | #define HAVE_POSIX_SETJMP 1 | #define HAVE_GLIBC2 1 | #define RETSIGTYPE void | #define HAVE_INT64_T 1 | #define HAVE_INT_FAST64_T 1 | #define HAVE_DECL_SIZE_MAX 1 | #define R_SOCKLEN_T socklen_t | #define HAVE_STACK_T 1 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define R_INLINE inline | #define SIZEOF_INT 4 | #define INT_32_BITS 1 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_SIZE_T 8 | #define HAVE_LONG_DOUBLE 1 | #define SIZEOF_LONG_DOUBLE 16 | #define F77_FUNC(name,NAME) name ## _ | #define F77_FUNC_(name,NAME) name ## _ | #define HAVE_F77_UNDERSCORE 1 | #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 | #define SHLIB_EXT ".so" | #define HAVE_CXX11 1 | #define HAVE_OPENMP 1 | #define HAVE_OFF_T 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ALLOCA 1 | #define HAVE_EXPM1 1 | #define HAVE_HYPOT 1 | #define HAVE_LOG1P 1 | #define HAVE_LOG1PL 1 | #define HAVE_LOG2 1 | #define HAVE_LOG10 1 | #define HAVE_NEARBYINT 1 | #define HAVE_NEARBYINTL 1 | #define HAVE_POWL 1 | #define HAVE_RINT 1 | #define HAVE_RINTL 1 | #define HAVE_VA_COPY 1 | #define HAVE_ISBLANK 1 | #define HAVE_EXP10 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_FCNTL 1 | #define HAVE_GETGRGID 1 | #define HAVE_GETPWUID 1 | #define HAVE_KILL 1 | #define HAVE_SIGACTION 1 | #define HAVE_SIGALTSTACK 1 | #define HAVE_SIGEMPTYSET 1 | #define HAVE_FDOPEN 1 | #define HAVE_POPEN 1 | #define HAVE_SETENV 1 | #define HAVE_UNSETENV 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETPRIORITY 1 | #define HAVE_CHMOD 1 | #define HAVE_MKFIFO 1 | #define HAVE_STAT 1 | #define HAVE_UMASK 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_UTIMES 1 | #define HAVE_TIMES 1 | #define HAVE_GMTIME_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_ACCESS 1 | #define HAVE_CHDIR 1 | #define HAVE_EXECV 1 | #define HAVE_FTRUNCATE 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEUID 1 | #define HAVE_GETUID 1 | #define HAVE_LINK 1 | #define HAVE_READLINK 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSCONF 1 | #define HAVE_SCHED_SETAFFINITY 1 | #define HAVE_SCHED_GETAFFINITY 1 | #define HAVE_UTIME 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_TIMESPEC_GET 1 | #define HAVE_PUTENV 1 | #define HAVE_DECL_PUTENV 1 | #define HAVE_VASPRINTF 1 | #define HAVE_DECL_VASPRINTF 1 | #define HAVE_MEMPCPY 1 | #define HAVE_REALPATH 1 | #define HAVE_DECL_REALPATH 1 | #define HAVE_GLOB 1 | #define HAVE_OFF_T 1 | #define HAVE_ISNAN 1 | #define HAVE_DECL_ISFINITE 1 | #define HAVE_DECL_ISNAN 1 | #define IEEE_754 1 | #define HAVE_PUTENV_UNSET 1 | #define HAVE_LANGINFO_CODESET 1 | #define HAVE_MKDTEMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_DECL_MKDTEMP 1 | #define HAVE_DECL_STRDUP 1 | #define HAVE_DECL_STRNCASECMP 1 | #define HAVE_WORKING_CALLOC 1 | #define HAVE_WORKING_ISFINITE 1 | #define HAVE_WORKING_LOG1P 1 | #define HAVE_WORKING_FTELL 1 | #define HAVE_WORKING_SIGACTION 1 | #define HAVE_WORKING_64BIT_MKTIME 1 | #define HAVE_CABS 1 | #define HAVE_CARG 1 | #define HAVE_CEXP 1 | #define HAVE_CLOG 1 | #define HAVE_CSQRT 1 | #define HAVE_CPOW 1 | #define HAVE_CCOS 1 | #define HAVE_CSIN 1 | #define HAVE_CTAN 1 | #define HAVE_CACOS 1 | #define HAVE_CASIN 1 | #define HAVE_CATAN 1 | #define HAVE_CCOSH 1 | #define HAVE_CSINH 1 | #define HAVE_CTANH 1 | #define HAVE_TM_ZONE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_ICONV_H 1 | #define HAVE_ICONV 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_WCHAR_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_MBRTOWC 1 | #define HAVE_WCRTOMB 1 | #define HAVE_WCSCOLL 1 | #define HAVE_WCSFTIME 1 | #define HAVE_WCSTOD 1 | #define HAVE_MBSTOWCS 1 | #define HAVE_WCSTOMBS 1 | #define HAVE_WCTRANS 1 | #define HAVE_ISWBLANK 1 | #define HAVE_WCTYPE 1 | #define HAVE_ISWCTYPE 1 | #define HAVE_WCTRANS_T 1 | #define HAVE_MBSTATE_T 1 | #define USE_ICU 1 | #define X_DISPLAY_MISSING 1 | #define HAVE_PANGOCAIRO 1 | #define HAVE_WORKING_CAIRO 1 | #define HAVE_CAIRO_PDF 1 | #define HAVE_CAIRO_PS 1 | #define HAVE_CAIRO_SVG 1 | #define HAVE_BSD_NETWORKING 1 | #define HAVE_SOCKETS 1 | #define HAVE_INTERNET 1 | #define SUPPORT_LIBXML 1 | #define HAVE_JPEG 1 | #define HAVE_PNG 1 | #define HAVE_TIFFIO_H 1 | #define HAVE_TIFF 1 | #define HAVE_BZLIB_H 1 | #define HAVE_LZMA_H 1 | #define HAVE_LZMA 1 | #define HAVE_PCRE_H 1 | #define HAVE_POSIX_LEAPSECONDS 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 | #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 | #define HAVE_SETITIMER 1 | #define R_PROFILING 1 | #define HAVE_FSEEKO 1 | #define NVALGRIND 1 | #define VALGRIND_LEVEL 0 | #define HAVE_LIBC_STACK_END 1 | #define R_PRINTCMD "lpr" | #define SUPPORT_OPENMP 1 | #define HAVE_VISIBILITY 1 | #define HAVE_STDINT_H_WITH_UINTMAX 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define INTDIV0_RAISES_SIGFPE 1 | #define HAVE_INTTYPES_H_WITH_UINTMAX 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG 1 | #define HAVE_UINTMAX_T 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_ARGZ_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETCWD 1 | #define HAVE_GETEGID 1 | #define HAVE_GETEUID 1 | #define HAVE_GETGID 1 | #define HAVE_GETUID 1 | #define HAVE_MEMPCPY 1 | #define HAVE_MUNMAP 1 | #define HAVE_STPCPY 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRTOUL 1 | #define HAVE_TSEARCH 1 | #define HAVE_ARGZ_COUNT 1 | #define HAVE_ARGZ_STRINGIFY 1 | #define HAVE_ARGZ_NEXT 1 | #define HAVE___FSETLOCKING 1 | #define HAVE_DECL_FEOF_UNLOCKED 1 | #define HAVE_DECL_FGETS_UNLOCKED 1 | #define HAVE_ICONV 1 | #define ICONV_CONST | #define HAVE_NL_LOCALE_NAME 1 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_WCHAR_T 1 | #define HAVE_WINT_T 1 | #define HAVE_INTMAX_T 1 | #define HAVE_POSIX_PRINTF 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_ASPRINTF 1 | #define HAVE_FWPRINTF 1 | #define HAVE_PUTENV 1 | #define HAVE_SETENV 1 | #define HAVE_SETLOCALE 1 | #define HAVE_SNPRINTF 1 | #define HAVE_WCSLEN 1 | #define HAVE_DECL__SNPRINTF 0 | /* end confdefs.h. */ | #include | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | | #ifndef _snwprintf | char *p = (char *) _snwprintf; | #endif | | ; | return 0; | } configure:41814: result: no configure:41829: checking whether getc_unlocked is declared configure:41857: gcc -c -g -O2 conftest.c >&5 configure:41857: $? = 0 configure:41864: result: yes configure:41903: checking for nl_langinfo and CODESET configure:41936: result: yes configure:41945: checking for LC_MESSAGES configure:41969: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:41969: $? = 0 configure:41977: result: yes configure:42001: checking for shared library run path origin configure:42014: result: done configure:42046: checking for CFPreferencesCopyAppValue configure:42081: result: no configure:42088: checking for CFLocaleCopyCurrent configure:42123: result: no configure:42158: checking whether included gettext is requested configure:42168: result: no configure:42191: checking for GNU gettext in libc configure:42219: gcc -o conftest -g -O2 -L/usr/local/lib64 conftest.c -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n >&5 configure:42219: $? = 0 configure:42228: result: yes configure:42750: checking whether to use NLS configure:42752: result: yes configure:42755: checking where the gettext function comes from configure:42766: result: libc configure:42896: result: using as R_SHELL for scripts ... /bin/sh configure:43196: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by R config.status 3.2.0, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on orchid.rnet.missouri.edu config.status:1899: creating Makeconf config.status:1899: creating Makefile config.status:1899: creating doc/Makefile config.status:1899: creating doc/html/Makefile config.status:1899: creating doc/manual/Makefile config.status:1899: creating etc/Makefile config.status:1899: creating etc/Makeconf config.status:1899: creating etc/Renviron config.status:1899: creating etc/javaconf config.status:1899: creating etc/ldpaths config.status:1899: creating m4/Makefile config.status:1899: creating po/Makefile config.status:1899: creating share/Makefile config.status:1899: creating src/Makefile config.status:1899: creating src/appl/Makefile config.status:1899: creating src/extra/Makefile config.status:1899: creating src/extra/blas/Makefile config.status:1899: creating src/extra/bzip2/Makefile config.status:1899: creating src/extra/intl/Makefile config.status:1899: creating src/extra/pcre/Makefile config.status:1899: creating src/extra/tre/Makefile config.status:1899: creating src/extra/tzone/Makefile config.status:1899: creating src/extra/xdr/Makefile config.status:1899: creating src/extra/xz/Makefile config.status:1899: creating src/extra/zlib/Makefile config.status:1899: creating src/include/Makefile config.status:1899: creating src/include/Rmath.h0 config.status:1899: creating src/include/R_ext/Makefile config.status:1899: creating src/library/Recommended/Makefile config.status:1899: creating src/library/Makefile config.status:1899: creating src/library/base/DESCRIPTION config.status:1899: creating src/library/base/Makefile config.status:1899: creating src/library/compiler/DESCRIPTION config.status:1899: creating src/library/compiler/Makefile config.status:1899: creating src/library/datasets/DESCRIPTION config.status:1899: creating src/library/datasets/Makefile config.status:1899: creating src/library/graphics/DESCRIPTION config.status:1899: creating src/library/graphics/Makefile config.status:1899: creating src/library/graphics/src/Makefile config.status:1899: creating src/library/grDevices/DESCRIPTION config.status:1899: creating src/library/grDevices/Makefile config.status:1899: creating src/library/grDevices/src/Makefile config.status:1899: creating src/library/grDevices/src/cairo/Makefile config.status:1899: creating src/library/grid/DESCRIPTION config.status:1899: creating src/library/grid/Makefile config.status:1899: creating src/library/grid/src/Makefile config.status:1899: creating src/library/methods/DESCRIPTION config.status:1899: creating src/library/methods/Makefile config.status:1899: creating src/library/methods/src/Makefile config.status:1899: creating src/library/parallel/DESCRIPTION config.status:1899: creating src/library/parallel/Makefile config.status:1899: creating src/library/parallel/src/Makefile config.status:1899: creating src/library/profile/Makefile config.status:1899: creating src/library/stats/DESCRIPTION config.status:1899: creating src/library/stats/Makefile config.status:1899: creating src/library/stats/src/Makefile config.status:1899: creating src/library/stats4/DESCRIPTION config.status:1899: creating src/library/stats4/Makefile config.status:1899: creating src/library/splines/DESCRIPTION config.status:1899: creating src/library/splines/Makefile config.status:1899: creating src/library/splines/src/Makefile config.status:1899: creating src/library/tcltk/DESCRIPTION config.status:1899: creating src/library/tcltk/Makefile config.status:1899: creating src/library/tcltk/src/Makefile config.status:1899: creating src/library/tools/DESCRIPTION config.status:1899: creating src/library/tools/Makefile config.status:1899: creating src/library/tools/src/Makefile config.status:1899: creating src/library/translations/DESCRIPTION config.status:1899: creating src/library/translations/Makefile config.status:1899: creating src/library/utils/DESCRIPTION config.status:1899: creating src/library/utils/Makefile config.status:1899: creating src/library/utils/src/Makefile config.status:1899: creating src/main/Makefile config.status:1899: creating src/modules/Makefile config.status:1899: creating src/modules/X11/Makefile config.status:1899: creating src/modules/internet/Makefile config.status:1899: creating src/modules/lapack/Makefile config.status:1899: creating src/nmath/Makefile config.status:1899: creating src/nmath/standalone/Makefile config.status:1899: creating src/scripts/Makefile config.status:1899: creating src/scripts/R.sh config.status:1899: creating src/scripts/Rcmd config.status:1899: creating src/scripts/f77_f2c config.status:1899: creating src/scripts/javareconf config.status:1899: creating src/scripts/mkinstalldirs config.status:1899: creating src/scripts/pager config.status:1899: creating src/scripts/rtags config.status:1899: creating src/unix/Makefile config.status:1899: creating tests/Makefile config.status:1899: creating tests/Embedding/Makefile config.status:1899: creating tests/Examples/Makefile config.status:1899: creating tools/Makefile config.status:1899: creating src/include/config.h config.status:2085: src/include/config.h is unchanged config.status:2099: executing libtool commands config.status:2099: executing stamp-h commands configure:46501: result: R is now configured for x86_64-unknown-linux-gnu Source directory: . Installation directory: /bmlfast/bml_casp15/tools/casp14/casp14_qa/tools/R-3.2.0 C compiler: gcc -g -O2 Fortran 77 compiler: f95 -g -O2 C++ compiler: g++ -g -O2 C++ 11 compiler: g++ -g -O2 Fortran 90/95 compiler: gfortran -g -O2 Obj-C compiler: Interfaces supported: External libraries: bzlib, lzma, PCRE Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared BLAS, R profiling Capabilities skipped: Options not enabled: memory profiling Recommended packages: yes configure:46559: WARNING: you cannot build info or HTML versions of the R manuals configure:46563: WARNING: you cannot build PDF versions of the R manuals configure:46567: WARNING: you cannot build PDF versions of vignettes and help pages ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_bigendian=no ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_inline=inline ac_cv_c_uint64_t=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_BLAS_LIBS_set= 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ac_cv_header_utime_h=yes ac_cv_header_wchar_h=yes ac_cv_header_wctype_h=yes ac_cv_header_zlib_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_lib_bz2_BZ2_bzlibVersion=yes ac_cv_lib_dl_dlopen=yes ac_cv_lib_jpeg_jpeg_destroy_compress=yes ac_cv_lib_lzma_lzma_version_number=yes ac_cv_lib_m_cos=yes ac_cv_lib_m_sin=yes ac_cv_lib_pcre_pcre_fullinfo=yes ac_cv_lib_png_png_create_write_struct=yes ac_cv_lib_rt_clock_gettime=yes ac_cv_lib_sunmath_cospi=no ac_cv_lib_tiff_TIFFOpen=yes ac_cv_lib_z_inflateInit2_=yes ac_cv_lib_z_main=yes ac_cv_member_struct_stat_st_atim_tv_nsec=yes ac_cv_objc_compiler_gnu=no ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_FGREP='/usr/bin/grep -F' ac_cv_path_GETWD=/usr/bin/pwd ac_cv_path_GREP=/usr/bin/grep ac_cv_path_NOTANGLE=false ac_cv_path_PAGER=/usr/bin/less ac_cv_path_PAPERCONF=/usr/bin/paperconf ac_cv_path_PKGCONF=/usr/bin/pkg-config ac_cv_path_REALPATH=/usr/bin/realpath ac_cv_path_R_BROWSER=/usr/bin/firefox ac_cv_path_R_BZIPCMD=/usr/bin/bzip2 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acl_cv_hardcode_direct=no acl_cv_hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' acl_cv_hardcode_libdir_separator= acl_cv_hardcode_minus_L=no acl_cv_libext=a acl_cv_libname_spec='lib$name' acl_cv_library_names_spec='$libname$shrext' acl_cv_rpath=done acl_cv_shlibext=so acl_cv_wl=-Wl, am_cv_func_iconv=yes am_cv_langinfo_codeset=yes am_cv_lib_iconv=no am_cv_proto_iconv='extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);' am_cv_proto_iconv_arg1= ax_cv_cxx_compile_cxx11=yes gl_cv_cc_visibility=yes gl_cv_header_inttypes_h=yes gl_cv_header_stdint_h=yes gl_cv_size_max=yes gt_cv_c_intmax_t=yes gt_cv_c_long_double=yes gt_cv_c_wchar_t=yes gt_cv_c_wint_t=yes gt_cv_func_CFLocaleCopyCurrent=no gt_cv_func_CFPreferencesCopyAppValue=no gt_cv_func_gnugettext2_libc=yes gt_cv_func_printf_posix=yes gt_cv_int_divbyzero_sigfpe=yes gt_cv_inttypes_pri_broken=no gt_cv_nl_locale_name=yes gt_cv_val_LC_MESSAGES=yes lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX=/usr/bin/ld lt_cv_path_NM='/usr/bin/nm -B' lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_c_o_FC=yes lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_pic_works_F77=yes lt_cv_prog_compiler_pic_works_FC=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_compiler_static_works_F77=no lt_cv_prog_compiler_static_works_FC=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=1572864 nls_cv_force_use_gnu_gettext=no nls_cv_header_intl= nls_cv_header_libgt= nls_cv_use_gnu_gettext=no r_cv_OBJCXX= r_cv_bsd_networking=yes r_cv_c_inline=inline r_cv_c_libs=' -L/usr/local/lib64 -L/usr/lib/gcc/x86_64-redhat-linux/8 -L/usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/8/../../.. -lgcc_s' r_cv_c_no_math_inlines=no r_cv_cairo_works=yes r_cv_func_calloc_works=yes r_cv_func_isfinite_works=yes r_cv_func_log1p_works=yes r_cv_func_sigaction_works=yes r_cv_has_pangocairo=yes r_cv_have_bzlib=yes r_cv_have_curl728=no r_cv_have_lzma=yes r_cv_have_pcre810=yes r_cv_have_tm_gmtoff=yes r_cv_have_tm_zone=yes r_cv_header_glibc2=yes r_cv_header_jpeglib_h=yes r_cv_header_png_h=yes r_cv_header_setjmp_posix=yes r_cv_header_tcl_h=no r_cv_header_zlib_h=no r_cv_iconv_latin1=yes r_cv_icu=yes r_cv_ieee_754=yes r_cv_kern_usrstack=no r_cv_libc_stack_end=yes r_cv_misc_recommended_packages=yes r_cv_mktime_errno=no r_cv_objc_runtime=none r_cv_prog_c_v=-v r_cv_prog_cc_c_o_lo=yes r_cv_prog_cc_m='$(CC) -MM' r_cv_prog_cc_vis=yes r_cv_prog_cxx_m=yes r_cv_prog_f77_append_second_underscore=no r_cv_prog_f77_append_underscore=yes r_cv_prog_f77_can_run=yes r_cv_prog_f77_cc_compat=yes r_cv_prog_f77_cc_compat_complex=yes r_cv_prog_f77_vis=yes r_cv_prog_objc_flag__fobjc_exceptions=no r_cv_putenv_unset2=no r_cv_putenv_unset=yes r_cv_size_max=yes r_cv_sys_posix_leapseconds=yes r_cv_type_socklen=socklen_t r_cv_visibility_attribute=yes r_cv_working_ftell=yes r_cv_working_mktime=yes r_cv_zlib_mmap=yes ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='aclocal' ALLOCA='' AR='ar' ARFLAGS='rc' AUTOCONF='autoconf' AUTOHEADER='autoheader' AUTOMAKE='automake' AWK='gawk' BITMAP_LIBS='-ltiff -ljpeg -lpng -lz' BLAS_LIBS0='' BLAS_LIBS='-L$(R_HOME)/lib$(R_ARCH) -lRblas' BLAS_SHLIB_FALSE='#' BLAS_SHLIB_TRUE='' BUILDDIR_IS_SRCDIR='yes' BUILD_AQUA_FALSE='' BUILD_AQUA_TRUE='#' BUILD_BZLIB_FALSE='' BUILD_BZLIB_TRUE='#' BUILD_CC='' BUILD_CYGWIN_FALSE='' BUILD_CYGWIN_TRUE='#' BUILD_DEVCAIRO_FALSE='#' BUILD_DEVCAIRO_TRUE='' BUILD_HTML_FALSE='' BUILD_HTML_TRUE='#' BUILD_INCLUDED_LIBINTL='no' BUILD_LIBINTL_FALSE='' BUILD_LIBINTL_TRUE='#' BUILD_LTO_FALSE='' BUILD_LTO_TRUE='#' BUILD_PCRE_FALSE='' BUILD_PCRE_TRUE='#' BUILD_R='' BUILD_TRE_FALSE='#' BUILD_TRE_TRUE='' BUILD_TZONE_FALSE='' BUILD_TZONE_TRUE='#' BUILD_X11_FALSE='' BUILD_X11_TRUE='#' BUILD_XDR_FALSE='#' BUILD_XDR_TRUE='' BUILD_XZ_FALSE='' BUILD_XZ_TRUE='#' BUILD_ZLIB_FALSE='#' BUILD_ZLIB_TRUE='' BYTE_COMPILE_PACKAGES_FALSE='#' BYTE_COMPILE_PACKAGES_TRUE='' CAIROX11_CPPFLAGS='-I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz ' CAIROX11_LIBS='-lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -lX11 -lXext ' CAIRO_CPPFLAGS='-I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz ' CAIRO_LIBS='-lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo ' CATOBJEXT='.gmo' CC='gcc' CFLAGS='-g -O2' CFLAG_VISIBILITY='-fvisibility=hidden' COMPILE_FORTRAN_DOUBLE_COMPLEX_FALSE='' COMPILE_FORTRAN_DOUBLE_COMPLEX_TRUE='#' CPICFLAGS='-fpic' CPP='gcc -E' CPPFLAGS='-I/usr/local/include' CROSS_COMPILING_FALSE='' CROSS_COMPILING_TRUE='#' CURL_CONFIG='' CURL_CPPFLAGS='' CURL_LIBS='' CXX1X='g++' CXX1XFLAGS='-g -O2' CXX1XPICFLAGS='-fpic' CXX1XSTD=' ' CXX='g++' CXXCPP0='$(CXX) -E' CXXCPP='g++ -E' CXXFLAGS='-g -O2' CXXPICFLAGS='-fpic' C_VISIBILITY='-fvisibility=hidden' DATADIRNAME='share' DEFS='-DHAVE_CONFIG_H' DSYMUTIL='' DUMPBIN='' DYLIB_EXT='.so' DYLIB_LD='$(CC)' DYLIB_LDFLAGS='-shared -fopenmp' DYLIB_UNDEFINED_ALLOWED_FALSE='#' DYLIB_UNDEFINED_ALLOWED_TRUE='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/usr/bin/grep -E' EXEEXT='' F77='f95' F77_VISIBILITY='-fvisibility=hidden' FC='gfortran' FCFLAGS='-g -O2' FCFLAGS_f90='' FCFLAGS_f95='' FCLIBS='' FCPICFLAGS='-fpic' FFLAGS='-g -O2' FGREP='/usr/bin/grep -F' FLIBS=' -lgfortran -lm -lquadmath' FLIBS_IN_SO=' -lgfortran -lm -lquadmath' FOUNDATION_CPPFLAGS='' FOUNDATION_LIBS='' FPICFLAGS='-fpic' FW_VERSION='' GENCAT='gencat' GETWD='/usr/bin/pwd' GLIBC21='yes' GLIBC2='yes' GREP='/usr/bin/grep' HAVE_ASPRINTF='1' HAVE_CXX11='1' HAVE_FORTRAN_DOUBLE_COMPLEX='' HAVE_POSIX_PRINTF='1' HAVE_SNPRINTF='1' HAVE_VISIBILITY='1' HAVE_WPRINTF='0' INSTALL_DATA='${INSTALL} -m 644' INSTALL_INFO='' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTOBJEXT='.mo' INTERNET_LIBS='' INTLBISON='bison' INTLLIBS='' INTLOBJS='' INTL_LIBTOOL_SUFFIX_PREFIX='' INTL_MACOSX_LIBS='' JAR='' JAVA='' JAVAC='' JAVAH='' JAVA_CPPFLAGS0='' JAVA_HOME='' JAVA_LD_LIBRARY_PATH='' JAVA_LIBS0='' KPSEWHICH='' LAPACK_LDFLAGS='' LAPACK_LIBS='-L$(R_HOME)/lib$(R_ARCH) -lRlapack' LD='/usr/bin/ld' LDFLAGS='-L/usr/local/lib64' LIBICONV='' LIBINTL='' LIBM='-lm' LIBMULTITHREAD='' LIBOBJS='' LIBPTH='' LIBR0='' LIBR1='' LIBR_LDFLAGS='' LIBS=' -lpcre -llzma -lbz2 -lrt -ldl -lm -licuuc -licui18n' LIBTHREAD='' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIBTOOL_DEPS='tools/ltmain.sh' LIBnn='lib64' LIPO='' LN_S='ln -s' LTLIBICONV='' LTLIBINTL='' LTLIBMULTITHREAD='' LTLIBOBJS='' LTLIBPTH='' LTLIBTHREAD='' LTO='' LTOALL='' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAIN_CFLAGS='' MAIN_FFLAGS='' MAIN_LD='$(CC)' MAIN_LDFLAGS='-Wl,--export-dynamic -fopenmp' MAJ_MIN_VERSION='3.2' MAKE='make' MAKEINDEX='' MAKEINFO='' MKDIR_P='/usr/bin/mkdir -p' NM='/usr/bin/nm -B' NMEDIT='' NOTANGLE='false' OBJC='' OBJCFLAGS='' OBJCXX='' OBJCXXFLAGS='' OBJC_LIBS='' OBJDUMP='objdump' OBJEXT='o' OPENMP_CFLAGS='-fopenmp' OPENMP_CXXFLAGS='-fopenmp' OPENMP_FCFLAGS='-fopenmp' OPENMP_FFLAGS='-fopenmp' OSF_SH_BUG='"${@}"' OTOOL64='' OTOOL='' PACKAGE='R' PACKAGE_BUGREPORT='https://bugs.r-project.org' PACKAGE_NAME='R' PACKAGE_STRING='R 3.2.0' PACKAGE_TARNAME='R' PACKAGE_URL='https://www.r-project.org' PACKAGE_VERSION='3.2.0' PAGER='/usr/bin/less' PAPERCONF='/usr/bin/paperconf' PATH_SEPARATOR=':' PDFLATEX='' PDFTEX='' PKGCONF='/usr/bin/pkg-config' POSUB='po' PRI_MACROS_BROKEN='0' RANLIB='ranlib' RBLAS_LDFLAGS='' READLINE_LIBS='' REALPATH='/usr/bin/realpath' RLAPACK_LDFLAGS='' RMATH_HAVE_EXPM1='# define HAVE_EXPM1 1' RMATH_HAVE_HYPOT='# define HAVE_HYPOT 1' RMATH_HAVE_LOG1P='# define HAVE_LOG1P 1' RMATH_HAVE_WORKING_LOG1P='# define HAVE_WORKING_LOG1P 1' R_ARCH='' R_BATCHSAVE='' R_BROWSER='/usr/bin/firefox' R_BZIPCMD='/usr/bin/bzip2' R_CONFIG_ARGS=' '\''--prefix=/bmlfast/bml_casp15/tools/casp14/casp14_qa/tools/R-3.2.0'\'' '\''--with-readline=no'\'' '\''--with-x=no'\''' R_DEFS='' R_GZIPCMD='/usr/bin/gzip' R_JAVA_LD_LIBRARY_PATH='' R_LD_LIBRARY_PATH='/usr/local/lib64' R_OPENMP_CFLAGS='-fopenmp' R_OPENMP_FFLAGS='-fopenmp' R_OS='linux-gnu' R_OSTYPE='unix' R_PAPERSIZE='a4' R_PDFVIEWER='/usr/bin/xdg-open' R_PLATFORM='x86_64-unknown-linux-gnu' R_PRINTCMD='lpr' R_PROFILING='' R_RD4PDF='times,inconsolata,hyper' R_SHELL='/bin/sh' R_SYSTEM_ABI='linux,gcc,gxx,gfortran,?' R_UNZIPCMD='/usr/bin/unzip' R_XTRA_CFLAGS='' R_XTRA_CPPFLAGS2='-I$(R_INCLUDE_DIR)' R_XTRA_CPPFLAGS='' R_XTRA_CXXFLAGS='' R_XTRA_FFLAGS='' R_XTRA_LIBS='' R_ZIPCMD='/usr/bin/zip' Rshlibpath_var='LD_LIBRARY_PATH' SAFE_FFLAGS='-g -O2 -ffloat-store' SED='/usr/bin/sed' SHELL='/bin/sh' SHLIB_CFLAGS='' SHLIB_CXX1XLD='$(CXX1X) $(CXX1XSTD)' SHLIB_CXX1XLDFLAGS='-shared' SHLIB_CXXFLAGS='' SHLIB_CXXLD='$(CXX)' SHLIB_CXXLDFLAGS='-shared' SHLIB_EXT='.so' SHLIB_FCLD='$(FC)' SHLIB_FCLDFLAGS='-shared' SHLIB_FFLAGS='' SHLIB_LD='$(CC)' SHLIB_LDFLAGS='-shared' SHLIB_LIBADD='' SHLIB_OPENMP_CFLAGS='-fopenmp' SHLIB_OPENMP_CXXFLAGS='-fopenmp' SHLIB_OPENMP_FCFLAGS='-fopenmp' SHLIB_OPENMP_FFLAGS='-fopenmp' STATICR1='-Wl,--whole-archive' STATICR2='-Wl,--no-whole-archive' STRIP='strip' TAR='/usr/bin/gtar' TCLTK_CPPFLAGS='' TCLTK_LIBS='' TCL_CONFIG='' TEX='' TEXI2DVI='' TEXI2DVICMD='texi2dvi' TIRPC_CPPFLAGS='' TK_CONFIG='' USE_EXPORTFILES_FALSE='' USE_EXPORTFILES_TRUE='#' USE_EXTERNAL_BLAS_FALSE='' USE_EXTERNAL_BLAS_TRUE='#' USE_EXTERNAL_LAPACK_FALSE='' USE_EXTERNAL_LAPACK_TRUE='#' USE_ICU='' USE_ICU_APPLE='' USE_INCLUDED_LIBINTL='no' USE_MMAP_ZLIB_FALSE='#' USE_MMAP_ZLIB_TRUE='' USE_NLS='yes' USE_NLS_FALSE='#' USE_NLS_TRUE='' USE_RECOMMENDED_PACKAGES_FALSE='#' USE_RECOMMENDED_PACKAGES_TRUE='' USE_VECLIB_G95FIX_FALSE='' USE_VECLIB_G95FIX_TRUE='#' VERSION='3.2.0' WANT_R_FRAMEWORK_FALSE='' WANT_R_FRAMEWORK_TRUE='#' WANT_R_SHLIB_FALSE='' WANT_R_SHLIB_TRUE='#' WANT_R_STATIC_FALSE='' WANT_R_STATIC_TRUE='#' WHICH='/usr/bin/which' WOE32DLL='no' XMKMF='' XTRA_INTL_CPPFLAGS='' X_CFLAGS='' X_EXTRA_LIBS='' X_LIBS='' X_PRE_LIBS='' YACC='bison -y' YFLAGS='' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' ac_ct_F77='' ac_ct_FC='gfortran' ac_ct_OBJC='gcc' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' config_opts=' '\''--prefix=/bmlfast/bml_casp15/tools/casp14/casp14_qa/tools/R-3.2.0'\'' '\''--with-readline=no'\'' '\''--with-x=no'\''' custom_JAVA_CPPFLAGS='~autodetect~' custom_JAVA_HOME='' custom_JAVA_LD_LIBRARY_PATH='~autodetect~' custom_JAVA_LIBS='~autodetect~' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' libdir='${exec_prefix}/${LIBnn}' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' lt_ECHO='echo' mandir='${datarootdir}/man' mkdir_p='/usr/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/bmlfast/bml_casp15/tools/casp14/casp14_qa/tools/R-3.2.0' program_transform_name='s,x,x,' psdir='${docdir}' r_arch='' rdocdir='${rhome}/doc' rincludedir='${rhome}/include' rsharedir='${rhome}/share' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' shlibpath_var='LD_LIBRARY_PATH' striplib='strip --strip-unneeded' stripstaticlib='strip --strip-debug' sysconfdir='${prefix}/etc' target_alias='' use_tcltk='no' ## ------------------- ## ## File substitutions. ## ## ------------------- ## r_cc_lo_rules_frag='Makefrag.cc_lo' r_cc_rules_frag='Makefrag.cc' r_cxx_rules_frag='Makefrag.cxx' r_objc_rules_frag='Makefrag.m' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "R" #define PACKAGE_TARNAME "R" #define PACKAGE_VERSION "3.2.0" #define PACKAGE_STRING "R 3.2.0" #define PACKAGE_BUGREPORT "https://bugs.r-project.org" #define PACKAGE_URL "https://www.r-project.org" #define PACKAGE "R" #define VERSION "3.2.0" #define R_PLATFORM "x86_64-unknown-linux-gnu" #define R_CPU "x86_64" #define R_VENDOR "unknown" #define R_OS "linux-gnu" #define Unix 1 #define R_ARCH "" #define HAVE_VISIBILITY_ATTRIBUTE 1 #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define __EXTENSIONS__ 1 #define _ALL_SOURCE 1 #define _GNU_SOURCE 1 #define _POSIX_PTHREAD_SEMANTICS 1 #define _TANDEM_SOURCE 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define HAVE_LIBM 1 #define HAVE_LIBDL 1 #define STDC_HEADERS 1 #define HAVE_DIRENT_H 1 #define HAVE_SYS_WAIT_H 1 #define HAVE_ARPA_INET_H 1 #define HAVE_DLFCN_H 1 #define HAVE_ELF_H 1 #define HAVE_FEATURES_H 1 #define HAVE_FCNTL_H 1 #define HAVE_FPU_CONTROL_H 1 #define HAVE_GLOB_H 1 #define HAVE_GRP_H 1 #define HAVE_LANGINFO_H 1 #define HAVE_NETDB_H 1 #define HAVE_NETINET_IN_H 1 #define HAVE_PWD_H 1 #define HAVE_SCHED_H 1 #define HAVE_STRINGS_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_SELECT_H 1 #define HAVE_SYS_SOCKET_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_SYS_TIME_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_SYS_UTSNAME_H 1 #define HAVE_UNISTD_H 1 #define HAVE_UTIME_H 1 #define HAVE_STDALIGN_H 1 #define HAVE_ERRNO_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_LIMITS_H 1 #define HAVE_LOCALE_H 1 #define HAVE_STDARG_H 1 #define HAVE_STDBOOL_H 1 #define HAVE_STDINT_H 1 #define HAVE_STRING_H 1 #define HAVE_DECL_SIGSETJMP 1 #define HAVE_DECL_SIGLONGJMP 1 #define HAVE_POSIX_SETJMP 1 #define HAVE_GLIBC2 1 #define RETSIGTYPE void #define HAVE_INT64_T 1 #define HAVE_INT_FAST64_T 1 #define HAVE_DECL_SIZE_MAX 1 #define R_SOCKLEN_T socklen_t #define HAVE_STACK_T 1 #define HAVE_INTPTR_T 1 #define HAVE_UINTPTR_T 1 #define R_INLINE inline #define SIZEOF_INT 4 #define INT_32_BITS 1 #define SIZEOF_LONG 8 #define SIZEOF_LONG_LONG 8 #define SIZEOF_DOUBLE 8 #define SIZEOF_SIZE_T 8 #define HAVE_LONG_DOUBLE 1 #define SIZEOF_LONG_DOUBLE 16 #define F77_FUNC(name,NAME) name ## _ #define F77_FUNC_(name,NAME) name ## _ #define HAVE_F77_UNDERSCORE 1 #define HAVE_FORTRAN_DOUBLE_COMPLEX 1 #define SHLIB_EXT ".so" #define HAVE_CXX11 1 #define HAVE_OPENMP 1 #define HAVE_OFF_T 1 #define HAVE_ALLOCA_H 1 #define HAVE_ALLOCA 1 #define HAVE_DECL_ALLOCA 1 #define HAVE_EXPM1 1 #define HAVE_HYPOT 1 #define HAVE_LOG1P 1 #define HAVE_LOG1PL 1 #define HAVE_LOG2 1 #define HAVE_LOG10 1 #define HAVE_NEARBYINT 1 #define HAVE_NEARBYINTL 1 #define HAVE_POWL 1 #define HAVE_RINT 1 #define HAVE_RINTL 1 #define HAVE_VA_COPY 1 #define HAVE_ISBLANK 1 #define HAVE_EXP10 1 #define HAVE_FSEEKO 1 #define HAVE_FTELLO 1 #define HAVE_FCNTL 1 #define HAVE_GETGRGID 1 #define HAVE_GETPWUID 1 #define HAVE_KILL 1 #define HAVE_SIGACTION 1 #define HAVE_SIGALTSTACK 1 #define HAVE_SIGEMPTYSET 1 #define HAVE_FDOPEN 1 #define HAVE_POPEN 1 #define HAVE_SETENV 1 #define HAVE_UNSETENV 1 #define HAVE_GETRLIMIT 1 #define HAVE_GETRUSAGE 1 #define HAVE_GETPRIORITY 1 #define HAVE_CHMOD 1 #define HAVE_MKFIFO 1 #define HAVE_STAT 1 #define HAVE_UMASK 1 #define HAVE_GETTIMEOFDAY 1 #define HAVE_UTIMES 1 #define HAVE_TIMES 1 #define HAVE_GMTIME_R 1 #define HAVE_LOCALTIME_R 1 #define HAVE_NL_LANGINFO 1 #define HAVE_ACCESS 1 #define HAVE_CHDIR 1 #define HAVE_EXECV 1 #define HAVE_FTRUNCATE 1 #define HAVE_GETCWD 1 #define HAVE_GETEUID 1 #define HAVE_GETUID 1 #define HAVE_LINK 1 #define HAVE_READLINK 1 #define HAVE_SYMLINK 1 #define HAVE_SYSCONF 1 #define HAVE_SCHED_SETAFFINITY 1 #define HAVE_SCHED_GETAFFINITY 1 #define HAVE_UTIME 1 #define HAVE_LIBRT 1 #define HAVE_CLOCK_GETTIME 1 #define HAVE_TIMESPEC_GET 1 #define HAVE_PUTENV 1 #define HAVE_DECL_PUTENV 1 #define HAVE_VASPRINTF 1 #define HAVE_DECL_VASPRINTF 1 #define HAVE_MEMPCPY 1 #define HAVE_REALPATH 1 #define HAVE_DECL_REALPATH 1 #define HAVE_GLOB 1 #define HAVE_OFF_T 1 #define HAVE_ISNAN 1 #define HAVE_DECL_ISFINITE 1 #define HAVE_DECL_ISNAN 1 #define IEEE_754 1 #define HAVE_PUTENV_UNSET 1 #define HAVE_LANGINFO_CODESET 1 #define HAVE_MKDTEMP 1 #define HAVE_STRDUP 1 #define HAVE_STRNCASECMP 1 #define HAVE_DECL_MKDTEMP 1 #define HAVE_DECL_STRDUP 1 #define HAVE_DECL_STRNCASECMP 1 #define HAVE_WORKING_CALLOC 1 #define HAVE_WORKING_ISFINITE 1 #define HAVE_WORKING_LOG1P 1 #define HAVE_WORKING_FTELL 1 #define HAVE_WORKING_SIGACTION 1 #define HAVE_WORKING_64BIT_MKTIME 1 #define HAVE_CABS 1 #define HAVE_CARG 1 #define HAVE_CEXP 1 #define HAVE_CLOG 1 #define HAVE_CSQRT 1 #define HAVE_CPOW 1 #define HAVE_CCOS 1 #define HAVE_CSIN 1 #define HAVE_CTAN 1 #define HAVE_CACOS 1 #define HAVE_CASIN 1 #define HAVE_CATAN 1 #define HAVE_CCOSH 1 #define HAVE_CSINH 1 #define HAVE_CTANH 1 #define HAVE_TM_ZONE 1 #define HAVE_TM_GMTOFF 1 #define HAVE_ICONV_H 1 #define HAVE_ICONV 1 #define HAVE_ICONV 1 #define ICONV_CONST #define HAVE_WCHAR_H 1 #define HAVE_WCTYPE_H 1 #define HAVE_MBRTOWC 1 #define HAVE_WCRTOMB 1 #define HAVE_WCSCOLL 1 #define HAVE_WCSFTIME 1 #define HAVE_WCSTOD 1 #define HAVE_MBSTOWCS 1 #define HAVE_WCSTOMBS 1 #define HAVE_WCTRANS 1 #define HAVE_ISWBLANK 1 #define HAVE_WCTYPE 1 #define HAVE_ISWCTYPE 1 #define HAVE_WCTRANS_T 1 #define HAVE_MBSTATE_T 1 #define USE_ICU 1 #define X_DISPLAY_MISSING 1 #define HAVE_PANGOCAIRO 1 #define HAVE_WORKING_CAIRO 1 #define HAVE_CAIRO_PDF 1 #define HAVE_CAIRO_PS 1 #define HAVE_CAIRO_SVG 1 #define HAVE_BSD_NETWORKING 1 #define HAVE_SOCKETS 1 #define HAVE_INTERNET 1 #define SUPPORT_LIBXML 1 #define HAVE_JPEG 1 #define HAVE_PNG 1 #define HAVE_TIFFIO_H 1 #define HAVE_TIFF 1 #define HAVE_BZLIB_H 1 #define HAVE_LZMA_H 1 #define HAVE_LZMA 1 #define HAVE_PCRE_H 1 #define HAVE_POSIX_LEAPSECONDS 1 #define HAVE_SYS_TIME_H 1 #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_STRUCT_STAT_ST_ATIM_TV_NSEC 1 #define TYPEOF_STRUCT_STAT_ST_ATIM_IS_STRUCT_TIMESPEC 1 #define HAVE_SETITIMER 1 #define R_PROFILING 1 #define HAVE_FSEEKO 1 #define NVALGRIND 1 #define VALGRIND_LEVEL 0 #define HAVE_LIBC_STACK_END 1 #define R_PRINTCMD "lpr" #define SUPPORT_OPENMP 1 #define HAVE_VISIBILITY 1 #define HAVE_STDINT_H_WITH_UINTMAX 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define INTDIV0_RAISES_SIGFPE 1 #define HAVE_INTTYPES_H_WITH_UINTMAX 1 #define HAVE_UNSIGNED_LONG_LONG_INT 1 #define HAVE_UNSIGNED_LONG_LONG 1 #define HAVE_UINTMAX_T 1 #define HAVE_INTTYPES_H 1 #define HAVE_BUILTIN_EXPECT 1 #define HAVE_ARGZ_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_LIMITS_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETCWD 1 #define HAVE_GETEGID 1 #define HAVE_GETEUID 1 #define HAVE_GETGID 1 #define HAVE_GETUID 1 #define HAVE_MEMPCPY 1 #define HAVE_MUNMAP 1 #define HAVE_STPCPY 1 #define HAVE_STRCASECMP 1 #define HAVE_STRDUP 1 #define HAVE_STRTOUL 1 #define HAVE_TSEARCH 1 #define HAVE_ARGZ_COUNT 1 #define HAVE_ARGZ_STRINGIFY 1 #define HAVE_ARGZ_NEXT 1 #define HAVE___FSETLOCKING 1 #define HAVE_DECL_FEOF_UNLOCKED 1 #define HAVE_DECL_FGETS_UNLOCKED 1 #define HAVE_ICONV 1 #define ICONV_CONST #define HAVE_NL_LOCALE_NAME 1 #define HAVE_LONG_LONG_INT 1 #define HAVE_WCHAR_T 1 #define HAVE_WINT_T 1 #define HAVE_INTMAX_T 1 #define HAVE_POSIX_PRINTF 1 #define HAVE_STDINT_H 1 #define HAVE_STDINT_H 1 #define HAVE_STDDEF_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_ASPRINTF 1 #define HAVE_FWPRINTF 1 #define HAVE_PUTENV 1 #define HAVE_SETENV 1 #define HAVE_SETLOCALE 1 #define HAVE_SNPRINTF 1 #define HAVE_WCSLEN 1 #define HAVE_DECL__SNPRINTF 0 #define HAVE_DECL__SNWPRINTF 0 #define HAVE_DECL_GETC_UNLOCKED 1 #define HAVE_LANGINFO_CODESET 1 #define HAVE_LC_MESSAGES 1 #define ENABLE_NLS 1 #define HAVE_GETTEXT 1 #define HAVE_DCGETTEXT 1 configure: exit 0