####################################################################################################
#                                                                                                  #
#  Project     :  1D-BRNN                                                                          #
#  Release     :  3.3                                                                              #
#                                                                                                  #
#  File        :  makefile                                                                         #
#  Description :  Compiles the source code of 1D-BRNN                                              #
#                                                                                                  #
#  Author(s)    :  Christophe Magnan  (2013) - New generic version                                 #
#               :  Jianlin Cheng      (2003) - New custom version for SCRATCH                      #
#               :  Gianluca Pollastri (2001) - Customized version for SCRATCH                      #
#               :  Paolo Frasconi     (1997) - Initial generic version                             #
#                                                                                                  #
#  Copyright   :  Institute for Genomics and Bioinformatics                                        #
#                 University of California, Irvine                                                 #
#                                                                                                  #
#  Modified    :  2015/07/01                                                                       #
#                                                                                                  #
####################################################################################################

all: Options.o Sequence.o Dataset.o Layer.o Network.o Model.o Train_New_Model.o Train_Existing_Model.o Predict_Single_Model.o Predict_Multi_Models.o
	g++ Options.o Sequence.o Dataset.o Layer.o Network.o Model.o Train_New_Model.o -o train_model
	g++ Options.o Sequence.o Dataset.o Layer.o Network.o Model.o Train_Existing_Model.o -o retrain_model
	g++ Sequence.o Dataset.o Layer.o Network.o Model.o Predict_Single_Model.o -o predict_single
	g++ Sequence.o Dataset.o Layer.o Network.o Model.o Predict_Multi_Models.o -o predict_multi
	mv train_model retrain_model predict_single predict_multi ../bin; chmod 770 ../bin/*

Options.o: Import.h Options.h Options.cpp
	gcc -c Options.cpp

Sequence.o: Import.h Sequence.h Sequence.cpp
	gcc -c Sequence.cpp

Dataset.o: Import.h Sequence.h Dataset.h Dataset.cpp
	gcc -c Dataset.cpp

Layer.o: Import.h Layer.h Layer.cpp
	gcc -c Layer.cpp

Network.o: Import.h Layer.h Network.h Network.cpp
	gcc -c Network.cpp

Model.o: Import.h Sequence.h Dataset.h Layer.h Network.h Model.h Model.cpp
	gcc -c Model.cpp

Train_New_Model.o: Import.h Options.h Sequence.h Dataset.h Layer.h Network.h Model.h Train_New_Model.cpp
	gcc -c Train_New_Model.cpp

Train_Existing_Model.o: Import.h Options.h Sequence.h Dataset.h Layer.h Network.h Model.h Train_Existing_Model.cpp
	gcc -c Train_Existing_Model.cpp

Predict_Single_Model.o: Import.h Sequence.h Dataset.h Layer.h Network.h Model.h Predict_Single_Model.cpp
	gcc -c Predict_Single_Model.cpp

Predict_Multi_Models.o: Import.h Sequence.h Dataset.h Layer.h Network.h Model.h Predict_Multi_Models.cpp
	gcc -c Predict_Multi_Models.cpp

clean:
	rm -rf *.o