MODELLER 9.16, 2016/01/07, r10745

     PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS


                     Copyright(c) 1989-2016 Andrej Sali
                            All Rights Reserved

                             Written by A. Sali
                               with help from
              B. Webb, M.S. Madhusudhan, M-Y. Shen, G.Q. Dong,
          M.A. Marti-Renom, N. Eswar, F. Alber, M. Topf, B. Oliva,
             A. Fiser, R. Sanchez, B. Yerkovich, A. Badretdinov,
                     F. Melo, J.P. Overington, E. Feyfant
                 University of California, San Francisco, USA
                    Rockefeller University, New York, USA
                      Harvard University, Cambridge, USA
                   Imperial Cancer Research Fund, London, UK
              Birkbeck College, University of London, London, UK


Kind, OS, HostName, Kernel, Processor: 4, Linux sunflower.rnet.missouri.edu 2.6.32-431.23.3.el6.x86_64 x86_64
Date and time of compilation         : 2016/01/07 10:19:44
MODELLER executable type             : i386-intel8
Job starting time (YY/MM/DD HH:MM:SS): 2016/04/05 22:38:14

openf___224_> Open           $(LIB)/restyp.lib
openf___224_> Open           ${MODINSTALL9v16}/modlib/resgrp.lib
rdresgr_266_> Number of residue groups:        2
openf___224_> Open           ${MODINSTALL9v16}/modlib/sstruc.lib

Dynamically allocated memory at   amaxlibraries [B,KiB,MiB]:       191562     187.072     0.183

Dynamically allocated memory at   amaxlibraries [B,KiB,MiB]:       192090     187.588     0.183
openf___224_> Open           ${MODINSTALL9v16}/modlib/resdih.lib

Dynamically allocated memory at   amaxlibraries [B,KiB,MiB]:       240690     235.049     0.230
rdrdih__263_> Number of dihedral angle types         :        9
              Maximal number of dihedral angle optima:        3
              Dihedral angle names                   :  Alph Phi Psi Omeg chi1 chi2 chi3 chi4 chi5
openf___224_> Open           ${MODINSTALL9v16}/modlib/radii.lib

Dynamically allocated memory at   amaxlibraries [B,KiB,MiB]:       253990     248.037     0.242
openf___224_> Open           ${MODINSTALL9v16}/modlib/radii14.lib
openf___224_> Open           ${MODINSTALL9v16}/modlib/af_mnchdef.lib
rdwilmo_274_> Mainchain residue conformation classes:  APBLE
openf___224_> Open           ${MODINSTALL9v16}/modlib/mnch.lib
rdclass_257_> Number of classes:        5
openf___224_> Open           ${MODINSTALL9v16}/modlib/mnch1.lib
openf___224_> Open           ${MODINSTALL9v16}/modlib/mnch2.lib
openf___224_> Open           ${MODINSTALL9v16}/modlib/mnch3.lib
openf___224_> Open           ${MODINSTALL9v16}/modlib/xs4.mat
rdrrwgh_268_> Number of residue types:       21
openf______E> Cannot open file pdb_95.pir: No such file or directory


SEQ_DATABASE_FILE         : pdb_95.pir
SEQ_DATABASE_FORMAT       : PIR
CHAINS_LIST               : ALL
CLEAN_SEQUENCES           :            T
MINMAX_DB_SEQ_LEN         :           30        4000
Number of sequences       :            0
Number of residues        :            0
openf______E> Cannot open file pdb_95.pir: No such file or directory

   Could not open the PDB 95 database. This database is *not* included in the
   Modeller release, since it is frequently updated. To run this example, you
   first need to download pdb_95.pir.gz from the "Data file downloads" page on
   the Modeller website. (However, you can still run the rest of the
   examples in this directory without that database.)