MODELLER 9.16, 2016/01/07, r10745 PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS Copyright(c) 1989-2016 Andrej Sali All Rights Reserved Written by A. Sali with help from B. Webb, M.S. Madhusudhan, M-Y. Shen, G.Q. Dong, M.A. Marti-Renom, N. Eswar, F. Alber, M. Topf, B. Oliva, A. Fiser, R. Sanchez, B. Yerkovich, A. Badretdinov, F. Melo, J.P. Overington, E. Feyfant University of California, San Francisco, USA Rockefeller University, New York, USA Harvard University, Cambridge, USA Imperial Cancer Research Fund, London, UK Birkbeck College, University of London, London, UK Kind, OS, HostName, Kernel, Processor: 4, Linux sunflower.rnet.missouri.edu 2.6.32-431.23.3.el6.x86_64 x86_64 Date and time of compilation : 2016/01/07 10:19:44 MODELLER executable type : i386-intel8 Job starting time (YY/MM/DD HH:MM:SS): 2016/04/05 22:42:05 openf___224_> Open $(LIB)/restyp.lib openf___224_> Open ${MODINSTALL9v16}/modlib/resgrp.lib rdresgr_266_> Number of residue groups: 2 openf___224_> Open ${MODINSTALL9v16}/modlib/sstruc.lib Dynamically allocated memory at amaxlibraries [B,KiB,MiB]: 191562 187.072 0.183 Dynamically allocated memory at amaxlibraries [B,KiB,MiB]: 192090 187.588 0.183 openf___224_> Open ${MODINSTALL9v16}/modlib/resdih.lib Dynamically allocated memory at amaxlibraries [B,KiB,MiB]: 240690 235.049 0.230 rdrdih__263_> Number of dihedral angle types : 9 Maximal number of dihedral angle optima: 3 Dihedral angle names : Alph Phi Psi Omeg chi1 chi2 chi3 chi4 chi5 openf___224_> Open ${MODINSTALL9v16}/modlib/radii.lib Dynamically allocated memory at amaxlibraries [B,KiB,MiB]: 253990 248.037 0.242 openf___224_> Open ${MODINSTALL9v16}/modlib/radii14.lib openf___224_> Open ${MODINSTALL9v16}/modlib/af_mnchdef.lib rdwilmo_274_> Mainchain residue conformation classes: APBLE openf___224_> Open ${MODINSTALL9v16}/modlib/mnch.lib rdclass_257_> Number of classes: 5 openf___224_> Open ${MODINSTALL9v16}/modlib/mnch1.lib openf___224_> Open ${MODINSTALL9v16}/modlib/mnch2.lib openf___224_> Open ${MODINSTALL9v16}/modlib/mnch3.lib openf___224_> Open ${MODINSTALL9v16}/modlib/xs4.mat rdrrwgh_268_> Number of residue types: 21 openf___224_> Open pdb95.fsa Dynamically allocated memory at amaxsequence_db [B,KiB,MiB]: 276488 270.008 0.264 Dynamically allocated memory at amaxsequence_db [B,KiB,MiB]: 568359 555.038 0.542 Original number of sequences : 5508 Dynamically allocated memory at amaxalignment [B,KiB,MiB]: 570181 556.817 0.544 Dynamically allocated memory at amaxalignment [B,KiB,MiB]: 571631 558.233 0.545 Dynamically allocated memory at amaxalignment [B,KiB,MiB]: 574531 561.065 0.548 Dynamically allocated memory at amaxalignment [B,KiB,MiB]: 580331 566.729 0.553 Dynamically allocated memory at amaxalignment [B,KiB,MiB]: 591931 578.058 0.565 110 of 5508 chains converted 220 of 5508 chains converted 330 of 5508 chains converted Dynamically allocated memory at amaxalignment [B,KiB,MiB]: 615131 600.714 0.587 440 of 5508 chains converted 550 of 5508 chains converted 660 of 5508 chains converted 770 of 5508 chains converted 880 of 5508 chains converted 990 of 5508 chains converted 1100 of 5508 chains converted 1210 of 5508 chains converted 1320 of 5508 chains converted 1430 of 5508 chains converted 1540 of 5508 chains converted 1650 of 5508 chains converted 1760 of 5508 chains converted 1870 of 5508 chains converted 1980 of 5508 chains converted 2090 of 5508 chains converted 2200 of 5508 chains converted 2310 of 5508 chains converted 2420 of 5508 chains converted 2530 of 5508 chains converted 2640 of 5508 chains converted 2750 of 5508 chains converted 2860 of 5508 chains converted 2970 of 5508 chains converted 3080 of 5508 chains converted 3190 of 5508 chains converted 3300 of 5508 chains converted 3410 of 5508 chains converted 3520 of 5508 chains converted 3630 of 5508 chains converted 3740 of 5508 chains converted 3850 of 5508 chains converted 3960 of 5508 chains converted 4070 of 5508 chains converted 4180 of 5508 chains converted 4290 of 5508 chains converted 4400 of 5508 chains converted 4510 of 5508 chains converted 4620 of 5508 chains converted 4730 of 5508 chains converted 4840 of 5508 chains converted 4950 of 5508 chains converted 5060 of 5508 chains converted 5170 of 5508 chains converted 5280 of 5508 chains converted 5390 of 5508 chains converted 5500 of 5508 chains converted Filtered number of sequences : 5508 Dynamically allocated memory at finish [B,KiB,MiB]: 568359 555.038 0.542 Starting time : 2016/04/05 22:42:05 Closing time : 2016/04/05 22:42:06 Total CPU time [seconds] : 0.65