MODELLER 9.16, 2016/01/07, r10745

     PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS


                     Copyright(c) 1989-2016 Andrej Sali
                            All Rights Reserved

                             Written by A. Sali
                               with help from
              B. Webb, M.S. Madhusudhan, M-Y. Shen, G.Q. Dong,
          M.A. Marti-Renom, N. Eswar, F. Alber, M. Topf, B. Oliva,
             A. Fiser, R. Sanchez, B. Yerkovich, A. Badretdinov,
                     F. Melo, J.P. Overington, E. Feyfant
                 University of California, San Francisco, USA
                    Rockefeller University, New York, USA
                      Harvard University, Cambridge, USA
                   Imperial Cancer Research Fund, London, UK
              Birkbeck College, University of London, London, UK


Kind, OS, HostName, Kernel, Processor: 4, Linux sunflower.rnet.missouri.edu 2.6.32-431.23.3.el6.x86_64 x86_64
Date and time of compilation         : 2016/01/07 10:19:44
MODELLER executable type             : i386-intel8
Job starting time (YY/MM/DD HH:MM:SS): 2016/04/05 22:42:04

openf___224_> Open           $(LIB)/restyp.lib
openf___224_> Open           ${MODINSTALL9v16}/modlib/resgrp.lib
rdresgr_266_> Number of residue groups:        2
openf___224_> Open           ${MODINSTALL9v16}/modlib/sstruc.lib

Dynamically allocated memory at   amaxlibraries [B,KiB,MiB]:       191562     187.072     0.183

Dynamically allocated memory at   amaxlibraries [B,KiB,MiB]:       192090     187.588     0.183
openf___224_> Open           ${MODINSTALL9v16}/modlib/resdih.lib

Dynamically allocated memory at   amaxlibraries [B,KiB,MiB]:       240690     235.049     0.230
rdrdih__263_> Number of dihedral angle types         :        9
              Maximal number of dihedral angle optima:        3
              Dihedral angle names                   :  Alph Phi Psi Omeg chi1 chi2 chi3 chi4 chi5
openf___224_> Open           ${MODINSTALL9v16}/modlib/radii.lib

Dynamically allocated memory at   amaxlibraries [B,KiB,MiB]:       253990     248.037     0.242
openf___224_> Open           ${MODINSTALL9v16}/modlib/radii14.lib
openf___224_> Open           ${MODINSTALL9v16}/modlib/af_mnchdef.lib
rdwilmo_274_> Mainchain residue conformation classes:  APBLE
openf___224_> Open           ${MODINSTALL9v16}/modlib/mnch.lib
rdclass_257_> Number of classes:        5
openf___224_> Open           ${MODINSTALL9v16}/modlib/mnch1.lib
openf___224_> Open           ${MODINSTALL9v16}/modlib/mnch2.lib
openf___224_> Open           ${MODINSTALL9v16}/modlib/mnch3.lib
openf___224_> Open           ${MODINSTALL9v16}/modlib/xs4.mat
rdrrwgh_268_> Number of residue types:       21
openf___224_> Open           pdb95.fsa

Dynamically allocated memory at amaxsequence_db [B,KiB,MiB]:       276488     270.008     0.264

Dynamically allocated memory at amaxsequence_db [B,KiB,MiB]:       568359     555.038     0.542

Dynamically allocated memory at   amaxalignment [B,KiB,MiB]:       570181     556.817     0.544

Dynamically allocated memory at   amaxalignment [B,KiB,MiB]:       571631     558.233     0.545

Dynamically allocated memory at   amaxalignment [B,KiB,MiB]:       574531     561.065     0.548

Dynamically allocated memory at amaxsequence_db [B,KiB,MiB]:      1676130    1636.846     1.598

Dynamically allocated memory at   amaxalignment [B,KiB,MiB]:      1681930    1642.510     1.604

Dynamically allocated memory at   amaxalignment [B,KiB,MiB]:      1693530    1653.838     1.615

Dynamically allocated memory at   amaxalignment [B,KiB,MiB]:      1716730    1676.494     1.637

Dynamically allocated memory at amaxsequence_db [B,KiB,MiB]:      2267530    2214.385     2.162

SEQ_DATABASE_FILE         : pdb95.fsa
SEQ_DATABASE_FORMAT       : FASTA
CHAINS_LIST               : ALL
CLEAN_SEQUENCES           :            T
MINMAX_DB_SEQ_LEN         :            1       40000
Number of sequences       :         5508
Number of residues        :      1268520
Length of longest sequence:         1287


SEQ_DATABASE_FILE         : pdb95.bin
SEQ_DATABASE_FORMAT       : BINARY
SEARCH_CHAINS_LIST        : ALL
Number of sequences       :         5508
Number of residues        :      1268520
Length of longest sequence:         1287


Dynamically allocated memory at          finish [B,KiB,MiB]:      2220758    2168.709     2.118
Starting time                                            : 2016/04/05 22:42:04
Closing time                                             : 2016/04/05 22:42:05
Total CPU time [seconds]                                 :       0.62