MODELLER 9.16, 2016/01/07, r10745 PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS Copyright(c) 1989-2016 Andrej Sali All Rights Reserved Written by A. Sali with help from B. Webb, M.S. Madhusudhan, M-Y. Shen, G.Q. Dong, M.A. Marti-Renom, N. Eswar, F. Alber, M. Topf, B. Oliva, A. Fiser, R. Sanchez, B. Yerkovich, A. Badretdinov, F. Melo, J.P. Overington, E. Feyfant University of California, San Francisco, USA Rockefeller University, New York, USA Harvard University, Cambridge, USA Imperial Cancer Research Fund, London, UK Birkbeck College, University of London, London, UK Kind, OS, HostName, Kernel, Processor: 4, Linux sunflower.rnet.missouri.edu 2.6.32-431.23.3.el6.x86_64 x86_64 Date and time of compilation : 2016/01/07 10:19:44 MODELLER executable type : i386-intel8 Job starting time (YY/MM/DD HH:MM:SS): 2016/04/05 22:42:07 openf___224_> Open $(LIB)/restyp.lib openf___224_> Open ${MODINSTALL9v16}/modlib/resgrp.lib rdresgr_266_> Number of residue groups: 2 openf___224_> Open ${MODINSTALL9v16}/modlib/sstruc.lib openf___224_> Open ${MODINSTALL9v16}/modlib/resdih.lib rdrdih__263_> Number of dihedral angle types : 9 Maximal number of dihedral angle optima: 3 Dihedral angle names : Alph Phi Psi Omeg chi1 chi2 chi3 chi4 chi5 openf___224_> Open ${MODINSTALL9v16}/modlib/radii.lib openf___224_> Open ${MODINSTALL9v16}/modlib/radii14.lib openf___224_> Open ${MODINSTALL9v16}/modlib/af_mnchdef.lib rdwilmo_274_> Mainchain residue conformation classes: APBLE openf___224_> Open ${MODINSTALL9v16}/modlib/mnch.lib rdclass_257_> Number of classes: 5 openf___224_> Open ${MODINSTALL9v16}/modlib/mnch1.lib openf___224_> Open ${MODINSTALL9v16}/modlib/mnch2.lib openf___224_> Open ${MODINSTALL9v16}/modlib/mnch3.lib openf___224_> Open ${MODINSTALL9v16}/modlib/xs4.mat rdrrwgh_268_> Number of residue types: 21 openf___224_> Open ednf2.pap Read the alignment from file : ednf2.pap Total number of alignment positions: 137 # Code #_Res #_Segm PDB_code Name ------------------------------------------------------------------------------- 1 7rsa 124 1 7rsa undefined 2 edn 134 1 edn undefined 3 templ 124 1 templ undefined openf___224_> Open $(LIB)/as1.sim.mat rdrrwgh_268_> Number of residue types: 20 Segm Start Lngth -Loop +Loop -Shift +Shift N-Grw1 N-Grw2 C-Grw1 C-Grw2 1 3 11 0 2 -8 8 0 0 0 0 2 25 113 2 0 0 0 0 0 0 0 openf___224_> Open segmatch.P00010000.pap openf___224_> Open segmatch.A00010000.ali Aln,Scr,SegE,ResE,WResE: segmatch.A00010000.ali 65296.0 1 11 22 openf___224_> Open segmatch.P00020000.pap openf___224_> Open segmatch.A00020000.ali Aln,Scr,SegE,ResE,WResE: segmatch.A00020000.ali 65544.0 1 11 11 openf___224_> Open segmatch.P00030000.pap openf___224_> Open segmatch.A00030000.ali Aln,Scr,SegE,ResE,WResE: segmatch.A00030000.ali 67286.0 0 0 0 openf___224_> Open segmatch.P00040000.pap openf___224_> Open segmatch.A00040000.ali Aln,Scr,SegE,ResE,WResE: segmatch.A00040000.ali 66899.0 1 11 11 openf___224_> Open segmatch.P00050000.pap openf___224_> Open segmatch.A00050000.ali Aln,Scr,SegE,ResE,WResE: segmatch.A00050000.ali 66802.0 1 11 22 openf___224_> Open segmatch.P00060000.pap openf___224_> Open segmatch.A00060000.ali Aln,Scr,SegE,ResE,WResE: segmatch.A00060000.ali 66557.0 1 11 33 openf___224_> Open segmatch.P00070000.pap openf___224_> Open segmatch.A00070000.ali Aln,Scr,SegE,ResE,WResE: segmatch.A00070000.ali 66306.0 1 11 44 openf___224_> Open segmatch.P00080000.pap openf___224_> Open segmatch.A00080000.ali Aln,Scr,SegE,ResE,WResE: segmatch.A00080000.ali 67020.0 1 11 55 openf___224_> Open segmatch.P00090000.pap openf___224_> Open segmatch.A00090000.ali Aln,Scr,SegE,ResE,WResE: segmatch.A00090000.ali 69421.0 1 11 66 openf___224_> Open segmatch.P00100000.pap openf___224_> Open segmatch.A00100000.ali Aln,Scr,SegE,ResE,WResE: segmatch.A00100000.ali 66379.0 1 11 77 openf___224_> Open segmatch.P00110000.pap openf___224_> Open segmatch.A00110000.ali Aln,Scr,SegE,ResE,WResE: segmatch.A00110000.ali 67243.0 1 11 88 #,s,is,i: 11. 67243. 921 11 25 Number of sequences in block 1 : 1 File with alignment score distribution: segmatch.dat Total number of alignments evaluated : 11. Score cutoff for writing alignments : 0.00 Number of alignments written out : 11 Alignments in files : segmatch openf___224_> Open segmatch.dat Starting time : 2016/04/05 22:42:07 Closing time : 2016/04/05 22:42:08 Total CPU time [seconds] : 0.18