MODELLER 9.16, 2016/01/07, r10745 PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS Copyright(c) 1989-2016 Andrej Sali All Rights Reserved Written by A. Sali with help from B. Webb, M.S. Madhusudhan, M-Y. Shen, G.Q. Dong, M.A. Marti-Renom, N. Eswar, F. Alber, M. Topf, B. Oliva, A. Fiser, R. Sanchez, B. Yerkovich, A. Badretdinov, F. Melo, J.P. Overington, E. Feyfant University of California, San Francisco, USA Rockefeller University, New York, USA Harvard University, Cambridge, USA Imperial Cancer Research Fund, London, UK Birkbeck College, University of London, London, UK Kind, OS, HostName, Kernel, Processor: 4, Linux sunflower.rnet.missouri.edu 2.6.32-431.23.3.el6.x86_64 x86_64 Date and time of compilation : 2016/01/07 10:19:44 MODELLER executable type : i386-intel8 Job starting time (YY/MM/DD HH:MM:SS): 2016/04/05 22:42:08 SUPERPOSITION OF TWO 3D STRUCTURES (MODEL2 onto MODEL): # ALGNMT CODE 1 1fas 2 2ctx Least-squares superposition: PICKed MODEL atoms are used for superposition if they have equivalent atoms in MODEL2 Superposition done : T Refine using local substructures : T Numb of residues in MODEL : 61 Numb of atoms/sel atoms in MODEL : 468 61 Numb of residues in MODEL2 : 71 Numb of atoms in MODEL2 : 518 Equivalences refinement : F Numb of aligned equiv positions : 57 Numb of aligned equiv distances : 1596 RMS before superposition : 33.5586 RMS after superposition : 2.9723 DRMS : 2.2054 Distance cutoff : 3.5000 Numb of equiv cutoff positions : 43 Numb of equiv cutoff distances : 1393 Cutoff RMS after superposition : 1.7853 Cutoff DRMS : 1.3571 X_new = Rotation * X + Translation Rotation matrix : -0.6591 -0.5154 0.5476 0.0103 -0.7343 -0.6787 0.7520 -0.4417 0.4893 Translation vector: 67.0828 58.0228 9.5350 57 equivalent positions Total CPU time [seconds] : 0.19