MODELLER 9.16, 2016/01/07, r10745

     PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS


                     Copyright(c) 1989-2016 Andrej Sali
                            All Rights Reserved

                             Written by A. Sali
                               with help from
              B. Webb, M.S. Madhusudhan, M-Y. Shen, G.Q. Dong,
          M.A. Marti-Renom, N. Eswar, F. Alber, M. Topf, B. Oliva,
             A. Fiser, R. Sanchez, B. Yerkovich, A. Badretdinov,
                     F. Melo, J.P. Overington, E. Feyfant
                 University of California, San Francisco, USA
                    Rockefeller University, New York, USA
                      Harvard University, Cambridge, USA
                   Imperial Cancer Research Fund, London, UK
              Birkbeck College, University of London, London, UK


Kind, OS, HostName, Kernel, Processor: 4, Linux sunflower.rnet.missouri.edu 2.6.32-431.23.3.el6.x86_64 x86_64
Date and time of compilation         : 2016/01/07 10:19:44
MODELLER executable type             : i386-intel8
Job starting time (YY/MM/DD HH:MM:SS): 2016/04/05 22:42:09

openf___224_> Open           $(LIB)/restyp.lib
openf___224_> Open           ${MODINSTALL9v16}/modlib/resgrp.lib
rdresgr_266_> Number of residue groups:        2
openf___224_> Open           ${MODINSTALL9v16}/modlib/sstruc.lib
openf___224_> Open           ${MODINSTALL9v16}/modlib/resdih.lib
rdrdih__263_> Number of dihedral angle types         :        9
              Maximal number of dihedral angle optima:        3
              Dihedral angle names                   :  Alph Phi Psi Omeg chi1 chi2 chi3 chi4 chi5
openf___224_> Open           ${MODINSTALL9v16}/modlib/radii.lib
openf___224_> Open           ${MODINSTALL9v16}/modlib/radii14.lib
openf___224_> Open           ${MODINSTALL9v16}/modlib/af_mnchdef.lib
rdwilmo_274_> Mainchain residue conformation classes:  APBLE
openf___224_> Open           ${MODINSTALL9v16}/modlib/mnch.lib
rdclass_257_> Number of classes:        5
openf___224_> Open           ${MODINSTALL9v16}/modlib/mnch1.lib
openf___224_> Open           ${MODINSTALL9v16}/modlib/mnch2.lib
openf___224_> Open           ${MODINSTALL9v16}/modlib/mnch3.lib
openf___224_> Open           ${MODINSTALL9v16}/modlib/xs4.mat
rdrrwgh_268_> Number of residue types:       21
openf___224_> Open           toxin.ali

Read the alignment from file       : toxin.ali
Total number of alignment positions:    75

  #  Code        #_Res #_Segm PDB_code    Name
-------------------------------------------------------------------------------
  1       2ctx      71      1        2ctx alpha-cobratoxin
  2       1fas      61      1        1fas fasciculin 1
openf___224_> Open           ../atom_files/pdb2ctx.ent
read_mo_297_> Segments, residues, atoms:        1       71      518
read_mo_298_> Segment:        1     1 A    71 A      518
openf___224_> Open           ../atom_files/pdb1fas.ent
read_mo_297_> Segments, residues, atoms:        1       61      468
read_mo_298_> Segment:        1     1 A    61 A      468
  #      ALGNMT CODE

  1  2ctx
  2  1fas
openf___224_> Open           1fas.ini
wrpdb___568_> Residues, atoms, selected atoms:       61      468      468
Starting time                                            : 2016/04/05 22:42:09
Closing time                                             : 2016/04/05 22:42:09
Total CPU time [seconds]                                 :       0.18