// This file is a hack to get versions of Xcode prior to 3.1 to index headers
#include "../src/apps/benchmark/benchmark.hh"
#include "../src/apps/benchmark/Design.bench.hh"
#include "../src/apps/benchmark/Docking.bench.hh"
#include "../src/apps/benchmark/init_util.hh"
#include "../src/apps/benchmark/LigandDock.bench.hh"
#include "../src/apps/benchmark/Minimizer.bench.hh"
#include "../src/apps/benchmark/score.bench.hh"
#include "../src/apps/benchmark/ShearMover.bench.hh"
#include "../src/apps/benchmark/SmallMover.bench.hh"
#include "../src/apps/pilot/bcorreia/fold_from_loops.hh"
#include "../src/apps/pilot/bcorreia/fold_from_loops_devel.hh"
#include "../src/apps/pilot/blivens/disulfides.hh"
#include "../src/apps/pilot/christophe/PCS_main.hh"
#include "../src/apps/pilot/dgront/ApplicationContext.hh"
#include "../src/apps/pilot/dgront/CustomAbinitio.hh"
#include "../src/apps/pilot/dgront/JumpSpecificAbrelax.hh"
#include "../src/apps/pilot/dgront/LibraryJumpSetup.hh"
#include "../src/apps/pilot/dgront/SpecificJumpSetup.hh"
#include "../src/apps/pilot/gktaylor/homolog_cst.hh"
#include "../src/apps/pilot/james/homolog_cst.hh"
#include "../src/apps/pilot/james/james_util.hh"
#include "../src/apps/pilot/olli/r_broker.hh"
#include "../src/apps/pilot/phil/capri15_scoring.hh"
#include "../src/apps/pilot/phil/loop_model.hh"
#include "../src/apps/pilot/rjha/MetalInterface.hh"
#include "../src/apps/pilot/smlewis/HECT/HECT.hh"
#include "../src/apps/pilot/will/mynamespaces.hh"
#include "../src/apps/pilot/will/query_lang/Vec.hh"
#include "../src/apps/public/boinc/boinc_mac_app_icon.hh"
#include "../src/core/chemical/AA.hh"
#include "../src/core/chemical/Adduct.fwd.hh"
#include "../src/core/chemical/Adduct.hh"
#include "../src/core/chemical/adduct_util.hh"
#include "../src/core/chemical/AtomICoor.fwd.hh"
#include "../src/core/chemical/AtomICoor.hh"
#include "../src/core/chemical/AtomType.fwd.hh"
#include "../src/core/chemical/AtomType.hh"
#include "../src/core/chemical/AtomTypeSet.fwd.hh"
#include "../src/core/chemical/AtomTypeSet.hh"
#include "../src/core/chemical/automorphism.hh"
#include "../src/core/chemical/ChemicalManager.fwd.hh"
#include "../src/core/chemical/ChemicalManager.hh"
#include "../src/core/chemical/CSDAtomType.hh"
#include "../src/core/chemical/CSDAtomTypeSet.fwd.hh"
#include "../src/core/chemical/CSDAtomTypeSet.hh"
#include "../src/core/chemical/disulfide_util.hh"
#include "../src/core/chemical/MMAtomType.fwd.hh"
#include "../src/core/chemical/MMAtomType.hh"
#include "../src/core/chemical/MMAtomTypeSet.fwd.hh"
#include "../src/core/chemical/MMAtomTypeSet.hh"
#include "../src/core/chemical/Patch.fwd.hh"
#include "../src/core/chemical/Patch.hh"
#include "../src/core/chemical/PatchOperation.fwd.hh"
#include "../src/core/chemical/PatchOperation.hh"
#include "../src/core/chemical/ResConnID.fwd.hh"
#include "../src/core/chemical/ResConnID.hh"
#include "../src/core/chemical/residue_io.hh"
#include "../src/core/chemical/ResidueConnection.fwd.hh"
#include "../src/core/chemical/ResidueConnection.hh"
#include "../src/core/chemical/ResidueSelector.fwd.hh"
#include "../src/core/chemical/ResidueSelector.hh"
#include "../src/core/chemical/ResidueSupport.hh"
#include "../src/core/chemical/ResidueType.fwd.hh"
#include "../src/core/chemical/ResidueType.hh"
#include "../src/core/chemical/ResidueTypeSet.fwd.hh"
#include "../src/core/chemical/ResidueTypeSet.hh"
#include "../src/core/chemical/types.hh"
#include "../src/core/chemical/util.hh"
#include "../src/core/chemical/VariantType.fwd.hh"
#include "../src/core/chemical/VariantType.hh"
#include "../src/core/coarse/Coarse.hh"
#include "../src/core/coarse/CoarseEtable.fwd.hh"
#include "../src/core/coarse/CoarseEtable.hh"
#include "../src/core/coarse/Rules.fwd.hh"
#include "../src/core/coarse/Rules.hh"
#include "../src/core/coarse/Translator.fwd.hh"
#include "../src/core/coarse/Translator.hh"
#include "../src/core/coarse/TranslatorSet.fwd.hh"
#include "../src/core/coarse/TranslatorSet.hh"
#include "../src/core/conformation/Atom.fwd.hh"
#include "../src/core/conformation/Atom.hh"
#include "../src/core/conformation/Conformation.fwd.hh"
#include "../src/core/conformation/Conformation.hh"
#include "../src/core/conformation/Interface.fwd.hh"
#include "../src/core/conformation/Interface.hh"
#include "../src/core/conformation/PseudoBond.fwd.hh"
#include "../src/core/conformation/PseudoBond.hh"
#include "../src/core/conformation/Residue.functions.hh"
#include "../src/core/conformation/Residue.fwd.hh"
#include "../src/core/conformation/Residue.hh"
#include "../src/core/conformation/ResidueFactory.hh"
#include "../src/core/conformation/ResidueKinWriter.fwd.hh"
#include "../src/core/conformation/ResidueKinWriter.hh"
#include "../src/core/conformation/ResidueMatcher.fwd.hh"
#include "../src/core/conformation/ResidueMatcher.hh"
#include "../src/core/conformation/SecondaryStructure.fwd.hh"
#include "../src/core/conformation/SecondaryStructure.hh"
#include "../src/core/conformation/signals/ConnectionEvent.fwd.hh"
#include "../src/core/conformation/signals/ConnectionEvent.hh"
#include "../src/core/conformation/signals/GeneralEvent.fwd.hh"
#include "../src/core/conformation/signals/GeneralEvent.hh"
#include "../src/core/conformation/signals/IdentityEvent.fwd.hh"
#include "../src/core/conformation/signals/IdentityEvent.hh"
#include "../src/core/conformation/signals/LengthEvent.fwd.hh"
#include "../src/core/conformation/signals/LengthEvent.hh"
#include "../src/core/conformation/signals/XYZEvent.fwd.hh"
#include "../src/core/conformation/signals/XYZEvent.hh"
#include "../src/core/conformation/symmetry/SymDof.fwd.hh"
#include "../src/core/conformation/symmetry/SymDof.hh"
#include "../src/core/conformation/symmetry/SymmData.fwd.hh"
#include "../src/core/conformation/symmetry/SymmData.hh"
#include "../src/core/conformation/symmetry/SymmDataFactory.hh"
#include "../src/core/conformation/symmetry/SymmetricConformation.fwd.hh"
#include "../src/core/conformation/symmetry/SymmetricConformation.hh"
#include "../src/core/conformation/symmetry/SymmetryInfo.fwd.hh"
#include "../src/core/conformation/symmetry/SymmetryInfo.hh"
#include "../src/core/conformation/symmetry/SymSlideInfo.fwd.hh"
#include "../src/core/conformation/symmetry/SymSlideInfo.hh"
#include "../src/core/pose/symmetry/util.hh"
#include "../src/core/conformation/symmetry/VirtualCoordinate.fwd.hh"
#include "../src/core/conformation/symmetry/VirtualCoordinate.hh"
#include "../src/core/conformation/symmetry/VirtualCoordinates.hh"
#include "../src/core/conformation/util.hh"
#include "../src/core/fragment/BaseCacheUnit.hh"
#include "../src/core/fragment/BBTorsionAndAnglesSRFD.hh"
#include "../src/core/fragment/BBTorsionSRFD.fwd.hh"
#include "../src/core/fragment/BBTorsionSRFD.hh"
#include "../src/core/fragment/ConstantLengthFragSet.fwd.hh"
#include "../src/core/fragment/ConstantLengthFragSet.hh"
#include "../src/core/fragment/ConstantLengthFragSetIterator_.hh"
#include "../src/core/fragment/FragCache.fwd.hh"
#include "../src/core/fragment/FragCache.hh"
#include "../src/core/fragment/FragData.fwd.hh"
#include "../src/core/fragment/FragData.hh"
#include "../src/core/fragment/FragID.fwd.hh"
#include "../src/core/fragment/FragID.hh"
#include "../src/core/fragment/FragID_Iterator.fwd.hh"
#include "../src/core/fragment/FragID_Iterator.hh"
#include "../src/core/fragment/FragmentIO.hh"
#include "../src/core/fragment/FragSet.fwd.hh"
#include "../src/core/fragment/FragSet.hh"
#include "../src/core/fragment/FragSetCollection.fwd.hh"
#include "../src/core/fragment/FragSetCollection.hh"
#include "../src/core/fragment/Frame.fwd.hh"
#include "../src/core/fragment/Frame.hh"
#include "../src/core/fragment/FrameIterator.fwd.hh"
#include "../src/core/fragment/FrameIterator.hh"
#include "../src/core/fragment/FrameIteratorWorker_.fwd.hh"
#include "../src/core/fragment/FrameIteratorWorker_.hh"
#include "../src/core/fragment/FrameList.fwd.hh"
#include "../src/core/fragment/FrameList.hh"
#include "../src/core/fragment/FrameListIterator_.hh"
#include "../src/core/fragment/IndependentBBTorsionSRFD.fwd.hh"
#include "../src/core/fragment/IndependentBBTorsionSRFD.hh"
#include "../src/core/fragment/JumpingFrame.fwd.hh"
#include "../src/core/fragment/JumpingFrame.hh"
#include "../src/core/fragment/JumpSRFD.fwd.hh"
#include "../src/core/fragment/JumpSRFD.hh"
#include "../src/core/fragment/OrderedFragSet.fwd.hh"
#include "../src/core/fragment/OrderedFragSet.hh"
#include "../src/core/fragment/OrderedFragSetIterator_.hh"
#include "../src/core/fragment/picking/BestTotalScoreSelector.fwd.hh"
#include "../src/core/fragment/picking/BestTotalScoreSelector.hh"
#include "../src/core/fragment/picking/BoundedCollector.fwd.hh"
#include "../src/core/fragment/picking/BoundedCollector.hh"
#include "../src/core/fragment/picking/BoundedPriorityQueue.hh"
#include "../src/core/fragment/picking/CandidatesCollector.fwd.hh"
#include "../src/core/fragment/picking/CandidatesCollector.hh"
#include "../src/core/fragment/picking/CommonFragmentComparators.fwd.hh"
#include "../src/core/fragment/picking/CommonFragmentComparators.hh"
#include "../src/core/fragment/picking/CompositeFragmentSelector.hh"
#include "../src/core/fragment/picking/CS2ndShift.hh"
#include "../src/core/fragment/picking/CSTalosIO.hh"
#include "../src/core/fragment/picking/DiversifyCrmsdByClustering.hh"
#include "../src/core/fragment/picking/DiversifyCrmsdSelector.hh"
#include "../src/core/fragment/picking/DiversifyDihedralsSelector.hh"
#include "../src/core/fragment/picking/FragmentCandidate.fwd.hh"
#include "../src/core/fragment/picking/FragmentCandidate.hh"
#include "../src/core/fragment/picking/FragmentComparatorBase.fwd.hh"
#include "../src/core/fragment/picking/FragmentComparatorBase.hh"
#include "../src/core/fragment/picking/FragmentPicker.fwd.hh"
#include "../src/core/fragment/picking/FragmentPicker.hh"
#include "../src/core/fragment/picking/FragmentSelectingRule.fwd.hh"
#include "../src/core/fragment/picking/FragmentSelectingRule.hh"
#include "../src/core/fragment/picking/GrabAllCollector.hh"
#include "../src/core/fragment/picking/JCouplingIO.hh"
#include "../src/core/fragment/picking/LazySortedVector1.hh"
#include "../src/core/fragment/picking/PdbIdChunkFilter.fwd.hh"
#include "../src/core/fragment/picking/PdbIdChunkFilter.hh"
#include "../src/core/fragment/picking/PhiPsiTalosIO.hh"
#include "../src/core/fragment/picking/quota/ABEGO_SS_Config.hh"
#include "../src/core/fragment/picking/quota/ABEGO_SS_Map.fwd.hh"
#include "../src/core/fragment/picking/quota/ABEGO_SS_Map.hh"
#include "../src/core/fragment/picking/quota/ABEGO_SS_Pool.fwd.hh"
#include "../src/core/fragment/picking/quota/ABEGO_SS_Pool.hh"
#include "../src/core/fragment/picking/quota/QuotaCollector.fwd.hh"
#include "../src/core/fragment/picking/quota/QuotaCollector.hh"
#include "../src/core/fragment/picking/quota/QuotaConfig.hh"
#include "../src/core/fragment/picking/quota/QuotaPool.fwd.hh"
#include "../src/core/fragment/picking/quota/QuotaPool.hh"
#include "../src/core/fragment/picking/quota/QuotaSelector.fwd.hh"
#include "../src/core/fragment/picking/quota/QuotaSelector.hh"
#include "../src/core/fragment/picking/quota/SecondaryStructurePool.fwd.hh"
#include "../src/core/fragment/picking/quota/SecondaryStructurePool.hh"
#include "../src/core/fragment/picking/quota/TorsionBinPool.hh"
#include "../src/core/fragment/picking/scores/ABEGO_SS_Score.hh"
#include "../src/core/fragment/picking/scores/AdaptiveScoreHistogram.fwd.hh"
#include "../src/core/fragment/picking/scores/AdaptiveScoreHistogram.hh"
#include "../src/core/fragment/picking/scores/AmbigCSScore.hh"
#include "../src/core/fragment/picking/scores/AtomBasedConstraintsScore.fwd.hh"
#include "../src/core/fragment/picking/scores/AtomBasedConstraintsScore.hh"
#include "../src/core/fragment/picking/scores/AtomPairConstraintsScore.fwd.hh"
#include "../src/core/fragment/picking/scores/AtomPairConstraintsScore.hh"
#include "../src/core/fragment/picking/scores/BFactor.hh"
#include "../src/core/fragment/picking/scores/CachingScoringMethod.hh"
#include "../src/core/fragment/picking/scores/CSScore.hh"
#include "../src/core/fragment/picking/scores/DihedralConstraintsScore.fwd.hh"
#include "../src/core/fragment/picking/scores/DihedralConstraintsScore.hh"
#include "../src/core/fragment/picking/scores/DisulfideDistance.hh"
#include "../src/core/fragment/picking/scores/DisulfideIdentity.hh"
#include "../src/core/fragment/picking/scores/FourAtomsConstraintData.fwd.hh"
#include "../src/core/fragment/picking/scores/FourAtomsConstraintData.hh"
#include "../src/core/fragment/picking/scores/fragment_scoring_utilities.hh"
#include "../src/core/fragment/picking/scores/FragmentCrmsd.hh"
#include "../src/core/fragment/picking/scores/FragmentScoreManager.fwd.hh"
#include "../src/core/fragment/picking/scores/FragmentScoreManager.hh"
#include "../src/core/fragment/picking/scores/FragmentScoreMap.fwd.hh"
#include "../src/core/fragment/picking/scores/FragmentScoreMap.hh"
#include "../src/core/fragment/picking/scores/FragmentScoringMethod.fwd.hh"
#include "../src/core/fragment/picking/scores/FragmentScoringMethod.hh"
#include "../src/core/fragment/picking/scores/GunnCost.hh"
#include "../src/core/fragment/picking/scores/GunnCostScore.hh"
#include "../src/core/fragment/picking/scores/InterbondAngleScore.fwd.hh"
#include "../src/core/fragment/picking/scores/InterbondAngleScore.hh"
#include "../src/core/fragment/picking/scores/JCoupling.hh"
#include "../src/core/fragment/picking/scores/MidPhiOut.hh"
#include "../src/core/fragment/picking/scores/MidPsiOut.hh"
#include "../src/core/fragment/picking/scores/PartialSecondarySimilarity.hh"
#include "../src/core/fragment/picking/scores/PhiPsiRmsd.hh"
#include "../src/core/fragment/picking/scores/PhiPsiSquareWell.hh"
#include "../src/core/fragment/picking/scores/ProfileScore.fwd.hh"
#include "../src/core/fragment/picking/scores/ProfileScore.hh"
#include "../src/core/fragment/picking/scores/ProfileScoreBlosum62.hh"
#include "../src/core/fragment/picking/scores/ProfileScoreDistWeight.hh"
#include "../src/core/fragment/picking/scores/ProfileScoreL1.hh"
#include "../src/core/fragment/picking/scores/ProlinePhiScore.hh"
#include "../src/core/fragment/picking/scores/PValuedFragmentScoreManager.hh"
#include "../src/core/fragment/picking/scores/RamaScore.hh"
#include "../src/core/fragment/picking/scores/RDCScore.fwd.hh"
#include "../src/core/fragment/picking/scores/RDCScore.hh"
#include "../src/core/fragment/picking/scores/ScoreEValuator.hh"
#include "../src/core/fragment/picking/scores/SecondaryIdentity.hh"
#include "../src/core/fragment/picking/scores/SecondarySimilarity.hh"
#include "../src/core/fragment/picking/scores/SequenceIdentity.hh"
#include "../src/core/fragment/picking/scores/TalosSSSimilarity.hh"
#include "../src/core/fragment/picking/scores/TorsionBinSimilarity.hh"
#include "../src/core/fragment/picking/TorsionBinIO.hh"
#include "../src/core/fragment/picking/VallChunk.fwd.hh"
#include "../src/core/fragment/picking/VallChunk.hh"
#include "../src/core/fragment/picking/VallChunkFilter.fwd.hh"
#include "../src/core/fragment/picking/VallChunkFilter.hh"
#include "../src/core/fragment/picking/VallProvider.fwd.hh"
#include "../src/core/fragment/picking/VallProvider.hh"
#include "../src/core/fragment/picking/VallResidue.fwd.hh"
#include "../src/core/fragment/picking/VallResidue.hh"
#include "../src/core/fragment/picking_old/concepts/Book.fwd.hh"
#include "../src/core/fragment/picking_old/concepts/Book.hh"
#include "../src/core/fragment/picking_old/concepts/Bookmark.fwd.hh"
#include "../src/core/fragment/picking_old/concepts/Bookmark.hh"
#include "../src/core/fragment/picking_old/concepts/Extent.fwd.hh"
#include "../src/core/fragment/picking_old/concepts/Extent.hh"
#include "../src/core/fragment/picking_old/concepts/ExtentEvaluator.fwd.hh"
#include "../src/core/fragment/picking_old/concepts/ExtentEvaluator.hh"
#include "../src/core/fragment/picking_old/concepts/ExtentGenerator.fwd.hh"
#include "../src/core/fragment/picking_old/concepts/ExtentGenerator.hh"
#include "../src/core/fragment/picking_old/concepts/Librarian.fwd.hh"
#include "../src/core/fragment/picking_old/concepts/Librarian.hh"
#include "../src/core/fragment/picking_old/concepts/Library.fwd.hh"
#include "../src/core/fragment/picking_old/concepts/Library.hh"
#include "../src/core/fragment/picking_old/FragmentLibraryManager.fwd.hh"
#include "../src/core/fragment/picking_old/FragmentLibraryManager.hh"
#include "../src/core/fragment/picking_old/vall/eval/EnergyEval.fwd.hh"
#include "../src/core/fragment/picking_old/vall/eval/EnergyEval.hh"
#include "../src/core/fragment/picking_old/vall/eval/IdentityEval.fwd.hh"
#include "../src/core/fragment/picking_old/vall/eval/IdentityEval.hh"
#include "../src/core/fragment/picking_old/vall/eval/VallFragmentEval.fwd.hh"
#include "../src/core/fragment/picking_old/vall/eval/VallFragmentEval.hh"
#include "../src/core/fragment/picking_old/vall/gen/LengthGen.fwd.hh"
#include "../src/core/fragment/picking_old/vall/gen/LengthGen.hh"
#include "../src/core/fragment/picking_old/vall/gen/SecStructGen.fwd.hh"
#include "../src/core/fragment/picking_old/vall/gen/SecStructGen.hh"
#include "../src/core/fragment/picking_old/vall/gen/VallFragmentGen.fwd.hh"
#include "../src/core/fragment/picking_old/vall/gen/VallFragmentGen.hh"
#include "../src/core/fragment/picking_old/vall/scores/VallFragmentScore.fwd.hh"
#include "../src/core/fragment/picking_old/vall/scores/VallFragmentScore.hh"
#include "../src/core/fragment/picking_old/vall/util.hh"
#include "../src/core/fragment/picking_old/vall/vall_io.hh"
#include "../src/core/fragment/picking_old/vall/VallLibrarian.fwd.hh"
#include "../src/core/fragment/picking_old/vall/VallLibrarian.hh"
#include "../src/core/fragment/picking_old/vall/VallLibrary.fwd.hh"
#include "../src/core/fragment/picking_old/vall/VallLibrary.hh"
#include "../src/core/fragment/picking_old/vall/VallResidue.fwd.hh"
#include "../src/core/fragment/picking_old/vall/VallResidue.hh"
#include "../src/core/fragment/picking_old/vall/VallSection.fwd.hh"
#include "../src/core/fragment/picking_old/vall/VallSection.hh"
#include "../src/core/fragment/SecstructSRFD.hh"
#include "../src/core/fragment/SingleResidueFragData.fwd.hh"
#include "../src/core/fragment/SingleResidueFragData.hh"
#include "../src/core/fragment/SRFD_Implementations.hh"
#include "../src/core/fragment/TorsionSRFD.hh"
#include "../src/core/fragment/util.hh"
#include "../src/core/graph/ArrayPool.fwd.hh"
#include "../src/core/graph/ArrayPool.hh"
#include "../src/core/graph/DisjointSets.fwd.hh"
#include "../src/core/graph/DisjointSets.hh"
#include "../src/core/graph/find_neighbors.hh"
#include "../src/core/graph/Graph.fwd.hh"
#include "../src/core/graph/Graph.hh"
#include "../src/core/graph/graph_util.hh"
#include "../src/core/graph/PointGraph.fwd.hh"
#include "../src/core/graph/PointGraph.hh"
#include "../src/core/graph/PointGraphData.fwd.hh"
#include "../src/core/graph/PointGraphData.hh"
#include "../src/core/graph/UpperEdgeGraph.fwd.hh"
#include "../src/core/graph/UpperEdgeGraph.hh"
#include "../src/core/grid/CartGrid.fwd.hh"
#include "../src/core/grid/CartGrid.hh"
#include "../src/core/id/AtomID.fwd.hh"
#include "../src/core/id/AtomID.hh"
#include "../src/core/id/AtomID_Map.fwd.hh"
#include "../src/core/id/AtomID_Map.hh"
#include "../src/core/id/AtomID_Map.Pose.hh"
#include "../src/core/id/AtomID_Mask.fwd.hh"
#include "../src/core/id/AtomID_Mask.hh"
#include "../src/core/id/DOF_ID.fwd.hh"
#include "../src/core/id/DOF_ID.hh"
#include "../src/core/id/DOF_ID_Map.fwd.hh"
#include "../src/core/id/DOF_ID_Map.hh"
#include "../src/core/id/DOF_ID_Mask.fwd.hh"
#include "../src/core/id/DOF_ID_Mask.hh"
#include "../src/core/id/DOF_ID_Range.fwd.hh"
#include "../src/core/id/DOF_ID_Range.hh"
#include "../src/core/id/Exceptions.hh"
#include "../src/core/id/JumpID.fwd.hh"
#include "../src/core/id/JumpID.hh"
#include "../src/core/id/NamedAtomID.fwd.hh"
#include "../src/core/id/NamedAtomID.hh"
#include "../src/core/id/NamedStubID.fwd.hh"
#include "../src/core/id/NamedStubID.hh"
#include "../src/core/id/TorsionID.fwd.hh"
#include "../src/core/id/TorsionID.hh"
#include "../src/core/id/TorsionID_Range.fwd.hh"
#include "../src/core/id/TorsionID_Range.hh"
#include "../src/core/id/types.hh"
#include "../src/core/init/init.hh"
#include "../src/core/io/atom_tree_diffs/atom_tree_diff.hh"
#include "../src/core/io/database/open.hh"
#include "../src/core/io/pdb/file_data.fwd.hh"
#include "../src/core/io/pdb/file_data.hh"
#include "../src/core/io/pdb/pdb_dynamic_reader.hh"
#include "../src/core/io/pdb/pose_io.hh"
#include "../src/core/import_pose/pose_stream/ExtendedPoseInputStream.hh"
#include "../src/core/import_pose/pose_stream/MetaPoseInputStream.hh"
#include "../src/core/import_pose/pose_stream/PDBPoseInputStream.fwd.hh"
#include "../src/core/import_pose/pose_stream/PDBPoseInputStream.hh"
#include "../src/core/import_pose/pose_stream/PoseInputStream.fwd.hh"
#include "../src/core/import_pose/pose_stream/PoseInputStream.hh"
#include "../src/core/import_pose/pose_stream/PoseOutputStream.hh"
#include "../src/core/import_pose/pose_stream/SilentFilePoseInputStream.fwd.hh"
#include "../src/core/import_pose/pose_stream/SilentFilePoseInputStream.hh"
#include "../src/core/import_pose/pose_stream/util.hh"
#include "../src/core/io/raw_data/DecoyFileData.hh"
#include "../src/core/io/raw_data/DecoyStruct.hh"
#include "../src/core/io/raw_data/DisulfideFile.hh"
#include "../src/core/io/raw_data/Raw.fwd.hh"
#include "../src/core/io/raw_data/RawFileData.hh"
#include "../src/core/io/raw_data/RawStruct.hh"
#include "../src/core/io/raw_data/ScoreFileData.hh"
#include "../src/core/io/raw_data/ScoreStruct.hh"
#include "../src/core/io/sequence_comparation/DesignContrast.fwd.hh"
#include "../src/core/io/sequence_comparation/DesignContrast.hh"
#include "../src/core/io/serialization/serialize_pose.hh"
#include "../src/core/io/silent/Binary_Util.hh"
#include "../src/core/io/silent/BinaryProteinSilentStruct.hh"
#include "../src/core/io/silent/BinaryRNASilentStruct.hh"
#include "../src/core/io/silent/EnergyNames.fwd.hh"
#include "../src/core/io/silent/EnergyNames.hh"
#include "../src/core/io/silent/PDBSilentStruct.hh"
#include "../src/core/io/silent/ProteinSilentStruct.hh"
#include "../src/core/io/silent/ProteinSilentStruct.tmpl.hh"
#include "../src/core/io/silent/RNA_SilentStruct.hh"
#include "../src/core/io/silent/ScoreFileSilentStruct.hh"
#include "../src/core/io/silent/SharedSilentData.hh"
#include "../src/core/io/silent/silent.fwd.hh"
#include "../src/core/io/silent/SilentEnergy.hh"
#include "../src/core/io/silent/SilentFileData.fwd.hh"
#include "../src/core/io/silent/SilentFileData.hh"
#include "../src/core/io/silent/SilentStruct.fwd.hh"
#include "../src/core/io/silent/SilentStruct.hh"
#include "../src/core/io/silent/SilentStructFactory.fwd.hh"
#include "../src/core/io/silent/SilentStructFactory.hh"
#include "../src/core/io/silent/util.hh"
#include "../src/core/kinematics/all.fwd.hh"
#include "../src/core/kinematics/all.hh"
#include "../src/core/kinematics/AtomPointer.fwd.hh"
#include "../src/core/kinematics/AtomPointer.hh"
#include "../src/core/kinematics/AtomTree.fwd.hh"
#include "../src/core/kinematics/AtomTree.hh"
#include "../src/core/kinematics/AtomWithDOFChange.fwd.hh"
#include "../src/core/kinematics/AtomWithDOFChange.hh"
#include "../src/core/kinematics/CAlpha.hh"
#include "../src/core/kinematics/constants.hh"
#include "../src/core/kinematics/DomainMap.fwd.hh"
#include "../src/core/kinematics/DomainMap.hh"
#include "../src/core/kinematics/Edge.fwd.hh"
#include "../src/core/kinematics/Edge.hh"
#include "../src/core/kinematics/Exceptions.hh"
#include "../src/core/kinematics/FoldTree.fwd.hh"
#include "../src/core/kinematics/FoldTree.hh"
#include "../src/core/kinematics/Jump.fwd.hh"
#include "../src/core/kinematics/Jump.hh"
#include "../src/core/kinematics/MinimizerMapBase.fwd.hh"
#include "../src/core/kinematics/MinimizerMapBase.hh"
#include "../src/core/kinematics/MoveMap.fwd.hh"
#include "../src/core/kinematics/MoveMap.hh"
#include "../src/core/kinematics/ResidueCoordinateChangeList.fwd.hh"
#include "../src/core/kinematics/ResidueCoordinateChangeList.hh"
#include "../src/core/kinematics/RT.fwd.hh"
#include "../src/core/kinematics/RT.hh"
#include "../src/core/kinematics/ShortestPathInFoldTree.fwd.hh"
#include "../src/core/kinematics/ShortestPathInFoldTree.hh"
#include "../src/core/kinematics/Stub.fwd.hh"
#include "../src/core/kinematics/Stub.hh"
#include "../src/core/kinematics/tree/Atom.fwd.hh"
#include "../src/core/kinematics/tree/Atom.hh"
#include "../src/core/kinematics/tree/Atom_.hh"
#include "../src/core/kinematics/tree/BondedAtom.hh"
#include "../src/core/kinematics/tree/JumpAtom.hh"
#include "../src/core/kinematics/types.hh"
#include "../src/core/kinematics/util.hh"
#include "../src/core/kinematics/visualize.hh"
#include "../src/core/mm/MMBondAngleLibrary.fwd.hh"
#include "../src/core/mm/MMBondAngleLibrary.hh"
#include "../src/core/mm/MMBondAngleResidueTypeParam.fwd.hh"
#include "../src/core/mm/MMBondAngleResidueTypeParam.hh"
#include "../src/core/mm/MMBondAngleResidueTypeParamSet.fwd.hh"
#include "../src/core/mm/MMBondAngleResidueTypeParamSet.hh"
#include "../src/core/mm/MMBondAngleScore.fwd.hh"
#include "../src/core/mm/MMBondAngleScore.hh"
#include "../src/core/mm/MMLJEnergyTable.fwd.hh"
#include "../src/core/mm/MMLJEnergyTable.hh"
#include "../src/core/mm/MMLJLibrary.fwd.hh"
#include "../src/core/mm/MMLJLibrary.hh"
#include "../src/core/mm/MMLJScore.fwd.hh"
#include "../src/core/mm/MMLJScore.hh"
#include "../src/core/mm/MMTorsionLibrary.fwd.hh"
#include "../src/core/mm/MMTorsionLibrary.hh"
#include "../src/core/mm/MMTorsionScore.fwd.hh"
#include "../src/core/mm/MMTorsionScore.hh"
#include "../src/core/mm/mmtrie/MMEnergyTableAtom.fwd.hh"
#include "../src/core/mm/mmtrie/MMEnergyTableAtom.hh"
#include "../src/core/mm/mmtrie/MMEnergyTableRotamerTrie.fwd.hh"
#include "../src/core/optimization/atom_tree_minimize.hh"
#include "../src/core/optimization/AtomNode.hh"
#include "../src/core/optimization/AtomTreeMinimizer.fwd.hh"
#include "../src/core/optimization/AtomTreeMinimizer.hh"
#include "../src/core/optimization/AtomTreeMultifunc.fwd.hh"
#include "../src/core/optimization/AtomTreeMultifunc.hh"
#include "../src/core/optimization/DOF_Node.fwd.hh"
#include "../src/core/optimization/DOF_Node.hh"
#include "../src/core/optimization/GA_Minimizer.hh"
#include "../src/core/optimization/LineMinimizer.fwd.hh"
#include "../src/core/optimization/LineMinimizer.hh"
#include "../src/core/optimization/Minimizer.fwd.hh"
#include "../src/core/optimization/Minimizer.hh"
#include "../src/core/optimization/MinimizerMap.fwd.hh"
#include "../src/core/optimization/MinimizerMap.hh"
#include "../src/core/optimization/MinimizerOptions.fwd.hh"
#include "../src/core/optimization/MinimizerOptions.hh"
#include "../src/core/optimization/Multifunc.fwd.hh"
#include "../src/core/optimization/Multifunc.hh"
#include "../src/core/optimization/NumericalDerivCheckResult.fwd.hh"
#include "../src/core/optimization/NumericalDerivCheckResult.hh"
#include "../src/core/optimization/ParticleSwarmMinimizer.fwd.hh"
#include "../src/core/optimization/ParticleSwarmMinimizer.hh"
#include "../src/core/optimization/SingleResidueMultifunc.fwd.hh"
#include "../src/core/optimization/SingleResidueMultifunc.hh"
#include "../src/core/optimization/symmetry/sym_atom_tree_minimize.hh"
#include "../src/core/optimization/symmetry/SymAtomTreeMinimizer.fwd.hh"
#include "../src/core/optimization/symmetry/SymAtomTreeMinimizer.hh"
#include "../src/core/optimization/symmetry/SymAtomTreeMultifunc.hh"
#include "../src/core/optimization/symmetry/SymMinimizerMap.fwd.hh"
#include "../src/core/optimization/symmetry/SymMinimizerMap.hh"
#include "../src/core/optimization/types.hh"
#include "../src/core/options/after_opts.hh"
#include "../src/core/options/all.fwd.hh"
#include "../src/core/options/all.hh"
#include "../src/core/options/keys/abinitio.OptionKeys.gen.hh"
#include "../src/core/options/keys/abrelax.OptionKeys.gen.hh"
#include "../src/core/options/keys/all.fwd.hh"
#include "../src/core/options/keys/all.hh"
#include "../src/core/options/keys/AnchoredDesign.OptionKeys.gen.hh"
#include "../src/core/options/keys/antibody.OptionKeys.gen.hh"
#include "../src/core/options/keys/archive.OptionKeys.gen.hh"
#include "../src/core/options/keys/assembly.OptionKeys.gen.hh"
#include "../src/core/options/keys/backrub.OptionKeys.gen.hh"
#include "../src/core/options/keys/batch_relax.OptionKeys.gen.hh"
#include "../src/core/options/keys/bbg.OptionKeys.gen.hh"
#include "../src/core/options/keys/blivens.OptionKeys.gen.hh"
#include "../src/core/options/keys/boinc.OptionKeys.gen.hh"
#include "../src/core/options/keys/broker.OptionKeys.gen.hh"
#include "../src/core/options/keys/casp.OptionKeys.gen.hh"
#include "../src/core/options/keys/chunk.OptionKeys.gen.hh"
#include "../src/core/options/keys/cluster.OptionKeys.gen.hh"
#include "../src/core/options/keys/cm.OptionKeys.gen.hh"
#include "../src/core/options/keys/constraints.OptionKeys.gen.hh"
#include "../src/core/options/keys/corrections.OptionKeys.gen.hh"
#include "../src/core/options/keys/crossmatch.OptionKeys.gen.hh"
#include "../src/core/options/keys/ddg.OptionKeys.gen.hh"
#include "../src/core/options/keys/DenovoProteinDesign.OptionKeys.gen.hh"
#include "../src/core/options/keys/dna.OptionKeys.gen.hh"
#include "../src/core/options/keys/docking.OptionKeys.gen.hh"
#include "../src/core/options/keys/DomainAssembly.OptionKeys.gen.hh"
#include "../src/core/options/keys/edensity.OptionKeys.gen.hh"
#include "../src/core/options/keys/enzdes.OptionKeys.gen.hh"
#include "../src/core/options/keys/evaluation.OptionKeys.gen.hh"
#include "../src/core/options/keys/evolution.OptionKeys.gen.hh"
#include "../src/core/options/keys/fast_loops.OptionKeys.gen.hh"
#include "../src/core/options/keys/filters.OptionKeys.gen.hh"
#include "../src/core/options/keys/fldsgn.OptionKeys.gen.hh"
#include "../src/core/options/keys/flexpack.OptionKeys.gen.hh"
#include "../src/core/options/keys/flexPepDocking.OptionKeys.gen.hh"
#include "../src/core/options/keys/flxbb.OptionKeys.gen.hh"
#include "../src/core/options/keys/fold_and_dock.OptionKeys.gen.hh"
#include "../src/core/options/keys/fold_cst.OptionKeys.gen.hh"
#include "../src/core/options/keys/fold_from_loops.OptionKeys.gen.hh"
#include "../src/core/options/keys/frags.OptionKeys.gen.hh"
#include "../src/core/options/keys/holes.OptionKeys.gen.hh"
#include "../src/core/options/keys/hotspot.OptionKeys.gen.hh"
#include "../src/core/options/keys/in.OptionKeys.gen.hh"
#include "../src/core/options/keys/inout.OptionKeys.gen.hh"
#include "../src/core/options/keys/james.OptionKeys.gen.hh"
#include "../src/core/options/keys/jd2.OptionKeys.gen.hh"
#include "../src/core/options/keys/jumps.OptionKeys.gen.hh"
#include "../src/core/options/keys/krassk.OptionKeys.gen.hh"
#include "../src/core/options/keys/lh.OptionKeys.gen.hh"
#include "../src/core/options/keys/loopfcst.OptionKeys.gen.hh"
#include "../src/core/options/keys/LoopModel.OptionKeys.gen.hh"
#include "../src/core/options/keys/loops.OptionKeys.gen.hh"
#include "../src/core/options/keys/lp.OptionKeys.gen.hh"
#include "../src/core/options/keys/match.OptionKeys.gen.hh"
#include "../src/core/options/keys/mc.OptionKeys.gen.hh"
#include "../src/core/options/keys/membrane.OptionKeys.gen.hh"
#include "../src/core/options/keys/mike.OptionKeys.gen.hh"
#include "../src/core/options/keys/MM.OptionKeys.gen.hh"
#include "../src/core/options/keys/MonteCarlo.OptionKeys.gen.hh"
#include "../src/core/options/keys/motifs.OptionKeys.gen.hh"
#include "../src/core/options/keys/ms.OptionKeys.gen.hh"
#include "../src/core/options/keys/murphp.OptionKeys.gen.hh"
#include "../src/core/options/keys/optE.OptionKeys.gen.hh"
#include "../src/core/options/keys/optimization.OptionKeys.gen.hh"
#include "../src/core/options/keys/OptionKeys.cc.gen.hh"
#include "../src/core/options/keys/OptionKeys.cc.gen0.hh"
#include "../src/core/options/keys/OptionKeys.cc.gen1.hh"
#include "../src/core/options/keys/OptionKeys.cc.gen2.hh"
#include "../src/core/options/keys/OptionKeys.cc.gen3.hh"
#include "../src/core/options/keys/OptionKeys.hh"
#include "../src/core/options/keys/out.OptionKeys.gen.hh"
#include "../src/core/options/keys/packing.OptionKeys.gen.hh"
#include "../src/core/options/keys/packstat.OptionKeys.gen.hh"
#include "../src/core/options/keys/parser.OptionKeys.gen.hh"
#include "../src/core/options/keys/patterson.OptionKeys.gen.hh"
#include "../src/core/options/keys/PCS.OptionKeys.gen.hh"
#include "../src/core/options/keys/pH.OptionKeys.gen.hh"
#include "../src/core/options/keys/phil.OptionKeys.gen.hh"
#include "../src/core/options/keys/pose_metrics.OptionKeys.gen.hh"
#include "../src/core/options/keys/RBSegmentRelax.OptionKeys.gen.hh"
#include "../src/core/options/keys/rdc.OptionKeys.gen.hh"
#include "../src/core/options/keys/relax.OptionKeys.gen.hh"
#include "../src/core/options/keys/remodel.OptionKeys.gen.hh"
#include "../src/core/options/keys/resample.OptionKeys.gen.hh"
#include "../src/core/options/keys/rescore.OptionKeys.gen.hh"
#include "../src/core/options/keys/residues.OptionKeys.gen.hh"
#include "../src/core/options/keys/rna.OptionKeys.gen.hh"
#include "../src/core/options/keys/robert.OptionKeys.gen.hh"
#include "../src/core/options/keys/run.OptionKeys.gen.hh"
#include "../src/core/options/keys/score.OptionKeys.gen.hh"
#include "../src/core/options/keys/smhybrid.OptionKeys.gen.hh"
#include "../src/core/options/keys/SSrbrelax.OptionKeys.gen.hh"
#include "../src/core/options/keys/symmetry.OptionKeys.gen.hh"
#include "../src/core/options/keys/templates.OptionKeys.gen.hh"
#include "../src/core/options/keys/threadsc.OptionKeys.gen.hh"
#include "../src/core/options/keys/ufv.OptionKeys.gen.hh"
#include "../src/core/options/keys/wum.OptionKeys.gen.hh"
#include "../src/core/options/option.cc.gen.hh"
#include "../src/core/options/option.cc.include.gen.hh"
#include "../src/core/options/option.hh"
#include "../src/core/options/option_macros.hh"
#include "../src/core/options/util.hh"
#include "../src/core/pack/all.fwd.hh"
#include "../src/core/pack/all.hh"
#include "../src/core/pack/annealer/AnnealerFactory.fwd.hh"
#include "../src/core/pack/annealer/AnnealerFactory.hh"
#include "../src/core/pack/annealer/DebuggingAnnealer.fwd.hh"
#include "../src/core/pack/annealer/DebuggingAnnealer.hh"
#include "../src/core/pack/annealer/FASTERAnnealer.fwd.hh"
#include "../src/core/pack/annealer/FASTERAnnealer.hh"
#include "../src/core/pack/annealer/FixbbCoupledRotamerSimAnnealer.fwd.hh"
#include "../src/core/pack/annealer/FixbbCoupledRotamerSimAnnealer.hh"
#include "../src/core/pack/annealer/FixbbSimAnnealer.fwd.hh"
#include "../src/core/pack/annealer/FixbbSimAnnealer.hh"
#include "../src/core/pack/annealer/MultiCoolAnnealer.fwd.hh"
#include "../src/core/pack/annealer/MultiCoolAnnealer.hh"
#include "../src/core/pack/annealer/RotamerAssigningAnnealer.fwd.hh"
#include "../src/core/pack/annealer/RotamerAssigningAnnealer.hh"
#include "../src/core/pack/annealer/SimAnnealerBase.fwd.hh"
#include "../src/core/pack/annealer/SimAnnealerBase.hh"
#include "../src/core/pack/interaction_graph/AdditionalBackgroundNodesInteractionGraph.hh"
#include "../src/core/pack/interaction_graph/AminoAcidNeighborSparseMatrix.fwd.hh"
#include "../src/core/pack/interaction_graph/AminoAcidNeighborSparseMatrix.hh"
#include "../src/core/pack/interaction_graph/DensePDInteractionGraph.fwd.hh"
#include "../src/core/pack/interaction_graph/DensePDInteractionGraph.hh"
#include "../src/core/pack/interaction_graph/DoubleDensePDInteractionGraph.fwd.hh"
#include "../src/core/pack/interaction_graph/DoubleDensePDInteractionGraph.hh"
#include "../src/core/pack/interaction_graph/DoubleLazyInteractionGraph.fwd.hh"
#include "../src/core/pack/interaction_graph/DoubleLazyInteractionGraph.hh"
#include "../src/core/pack/interaction_graph/FASTERInteractionGraph.fwd.hh"
#include "../src/core/pack/interaction_graph/FASTERInteractionGraph.hh"
#include "../src/core/pack/interaction_graph/FixedBBInteractionGraph.fwd.hh"
#include "../src/core/pack/interaction_graph/FixedBBInteractionGraph.hh"
#include "../src/core/pack/interaction_graph/HPatchInteractionGraph.fwd.hh"
#include "../src/core/pack/interaction_graph/HPatchInteractionGraph.hh"
#include "../src/core/pack/interaction_graph/InteractionGraphBase.fwd.hh"
#include "../src/core/pack/interaction_graph/InteractionGraphBase.hh"
#include "../src/core/pack/interaction_graph/InteractionGraphFactory.fwd.hh"
#include "../src/core/pack/interaction_graph/InteractionGraphFactory.hh"
#include "../src/core/pack/interaction_graph/LazyInteractionGraph.fwd.hh"
#include "../src/core/pack/interaction_graph/LazyInteractionGraph.hh"
#include "../src/core/pack/interaction_graph/LinearMemoryInteractionGraph.fwd.hh"
#include "../src/core/pack/interaction_graph/LinearMemoryInteractionGraph.hh"
#include "../src/core/pack/interaction_graph/OnTheFlyInteractionGraph.fwd.hh"
#include "../src/core/pack/interaction_graph/OnTheFlyInteractionGraph.hh"
#include "../src/core/pack/interaction_graph/PDInteractionGraph.fwd.hh"
#include "../src/core/pack/interaction_graph/PDInteractionGraph.hh"
#include "../src/core/pack/interaction_graph/PrecomputedPairEnergiesInteractionGraph.fwd.hh"
#include "../src/core/pack/interaction_graph/PrecomputedPairEnergiesInteractionGraph.hh"
#include "../src/core/pack/interaction_graph/RotamerDots.fwd.hh"
#include "../src/core/pack/interaction_graph/RotamerDots.hh"
#include "../src/core/pack/interaction_graph/SparseMatrixIndex.fwd.hh"
#include "../src/core/pack/interaction_graph/SparseMatrixIndex.hh"
#include "../src/core/pack/interaction_graph/SurfaceInteractionGraph.fwd.hh"
#include "../src/core/pack/interaction_graph/SurfaceInteractionGraph.hh"
#include "../src/core/pack/optimizeH.hh"
#include "../src/core/pack/pack_missing_sidechains.hh"
#include "../src/core/pack/pack_rotamers.hh"
#include "../src/core/pack/packer_neighbors.hh"
#include "../src/core/pack/rotamer_set/BumpSelector.hh"
#include "../src/core/pack/rotamer_set/FixbbRotamerSets.fwd.hh"
#include "../src/core/pack/rotamer_set/FixbbRotamerSets.hh"
#include "../src/core/pack/rotamer_set/rotamer_building_functions.hh"
#include "../src/core/pack/rotamer_set/RotamerCouplings.fwd.hh"
#include "../src/core/pack/rotamer_set/RotamerCouplings.hh"
#include "../src/core/pack/rotamer_set/RotamerSet.fwd.hh"
#include "../src/core/pack/rotamer_set/RotamerSet.hh"
#include "../src/core/pack/rotamer_set/RotamerSet_.fwd.hh"
#include "../src/core/pack/rotamer_set/RotamerSet_.hh"
#include "../src/core/pack/rotamer_set/RotamerSetCacheableDataType.hh"
#include "../src/core/pack/rotamer_set/RotamerSetFactory.fwd.hh"
#include "../src/core/pack/rotamer_set/RotamerSetFactory.hh"
#include "../src/core/pack/rotamer_set/RotamerSetOperation.fwd.hh"
#include "../src/core/pack/rotamer_set/RotamerSetOperation.hh"
#include "../src/core/pack/rotamer_set/RotamerSets.fwd.hh"
#include "../src/core/pack/rotamer_set/RotamerSets.hh"
#include "../src/core/pack/rotamer_set/RotamerSetsBase.fwd.hh"
#include "../src/core/pack/rotamer_set/RotamerSetsBase.hh"
#include "../src/core/pack/rotamer_set/RotamerSubset.fwd.hh"
#include "../src/core/pack/rotamer_set/RotamerSubset.hh"
#include "../src/core/pack/rotamer_set/RotamerSubsets.fwd.hh"
#include "../src/core/pack/rotamer_set/RotamerSubsets.hh"
#include "../src/core/pack/rotamer_set/symmetry/SymmetricRotamerSet_.fwd.hh"
#include "../src/core/pack/rotamer_set/symmetry/SymmetricRotamerSet_.hh"
#include "../src/core/pack/rotamer_set/symmetry/SymmetricRotamerSetFactory.fwd.hh"
#include "../src/core/pack/rotamer_set/symmetry/SymmetricRotamerSetFactory.hh"
#include "../src/core/pack/rotamer_set/symmetry/SymmetricRotamerSets.fwd.hh"
#include "../src/core/pack/rotamer_set/symmetry/SymmetricRotamerSets.hh"
#include "../src/core/pack/rotamer_set/UnboundRotamersOperation.fwd.hh"
#include "../src/core/pack/rotamer_set/UnboundRotamersOperation.hh"
#include "../src/core/pack/rotamer_set/WaterAnchorInfo.fwd.hh"
#include "../src/core/pack/rotamer_set/WaterAnchorInfo.hh"
#include "../src/core/pack/rotamer_set/WaterPackingInfo.fwd.hh"
#include "../src/core/pack/rotamer_set/WaterPackingInfo.hh"
#include "../src/core/pack/rotamer_trials.hh"
#include "../src/core/pack/rtmin.hh"
#include "../src/core/pack/scmin/AtomTreeCollection.fwd.hh"
#include "../src/core/pack/scmin/AtomTreeCollection.hh"
#include "../src/core/pack/scmin/SCMinMinimizerMap.fwd.hh"
#include "../src/core/pack/scmin/SCMinMinimizerMap.hh"
#include "../src/core/pack/scmin/SCMinMultifunc.fwd.hh"
#include "../src/core/pack/scmin/SCMinMultifunc.hh"
#include "../src/core/pack/task/IGEdgeReweightContainer.fwd.hh"
#include "../src/core/pack/task/IGEdgeReweightContainer.hh"
#include "../src/core/pack/task/operation/NoRepackDisulfides.fwd.hh"
#include "../src/core/pack/task/operation/NoRepackDisulfides.hh"
#include "../src/core/pack/task/operation/NoRepackDisulfidesCreator.hh"
#include "../src/core/pack/task/operation/OperateOnCertainResidues.fwd.hh"
#include "../src/core/pack/task/operation/OperateOnCertainResidues.hh"
#include "../src/core/pack/task/operation/OperateOnCertainResiduesCreator.hh"
#include "../src/core/pack/task/operation/OptCysHG.fwd.hh"
#include "../src/core/pack/task/operation/OptCysHG.hh"
#include "../src/core/pack/task/operation/OptCysHGCreator.hh"
#include "../src/core/pack/task/operation/OptH.fwd.hh"
#include "../src/core/pack/task/operation/OptH.hh"
#include "../src/core/pack/task/operation/OptHCreator.hh"
#include "../src/core/pack/task/operation/ReplicateTask.fwd.hh"
#include "../src/core/pack/task/operation/ReplicateTask.hh"
#include "../src/core/pack/task/operation/ReplicateTaskCreator.hh"
#include "../src/core/pack/task/operation/ResFilter.fwd.hh"
#include "../src/core/pack/task/operation/ResFilter.hh"
#include "../src/core/pack/task/operation/ResFilterCreator.fwd.hh"
#include "../src/core/pack/task/operation/ResFilterCreator.hh"
#include "../src/core/pack/task/operation/ResFilterCreators.hh"
#include "../src/core/pack/task/operation/ResFilterFactory.fwd.hh"
#include "../src/core/pack/task/operation/ResFilterFactory.hh"
#include "../src/core/pack/task/operation/ResFilterRegistrator.hh"
#include "../src/core/pack/task/operation/ResFilters.fwd.hh"
#include "../src/core/pack/task/operation/ResFilters.hh"
#include "../src/core/pack/task/operation/ResLvlTaskOperation.fwd.hh"
#include "../src/core/pack/task/operation/ResLvlTaskOperation.hh"
#include "../src/core/pack/task/operation/ResLvlTaskOperationCreator.fwd.hh"
#include "../src/core/pack/task/operation/ResLvlTaskOperationCreator.hh"
#include "../src/core/pack/task/operation/ResLvlTaskOperationCreators.hh"
#include "../src/core/pack/task/operation/ResLvlTaskOperationFactory.fwd.hh"
#include "../src/core/pack/task/operation/ResLvlTaskOperationFactory.hh"
#include "../src/core/pack/task/operation/ResLvlTaskOperationRegistrator.hh"
#include "../src/core/pack/task/operation/ResLvlTaskOperations.fwd.hh"
#include "../src/core/pack/task/operation/ResLvlTaskOperations.hh"
#include "../src/core/pack/task/operation/RestrictToInterface.fwd.hh"
#include "../src/core/pack/task/operation/RestrictToInterface.hh"
#include "../src/core/pack/task/operation/RestrictToInterfaceCreator.hh"
#include "../src/core/pack/task/operation/TaskOperation.fwd.hh"
#include "../src/core/pack/task/operation/TaskOperation.hh"
#include "../src/core/pack/task/operation/TaskOperationCreator.fwd.hh"
#include "../src/core/pack/task/operation/TaskOperationCreator.hh"
#include "../src/core/pack/task/operation/TaskOperationCreators.hh"
#include "../src/core/pack/task/operation/TaskOperationFactory.fwd.hh"
#include "../src/core/pack/task/operation/TaskOperationFactory.hh"
#include "../src/core/pack/task/operation/TaskOperationRegistrator.hh"
#include "../src/core/pack/task/operation/TaskOperations.fwd.hh"
#include "../src/core/pack/task/operation/TaskOperations.hh"
#include "../src/core/pack/task/PackerTask.fwd.hh"
#include "../src/core/pack/task/PackerTask.hh"
#include "../src/core/pack/task/PackerTask_.fwd.hh"
#include "../src/core/pack/task/PackerTask_.hh"
#include "../src/core/pack/task/ResfileReader.fwd.hh"
#include "../src/core/pack/task/ResfileReader.hh"
#include "../src/core/pack/task/RotamerSampleOptions.hh"
#include "../src/core/pack/task/TaskFactory.fwd.hh"
#include "../src/core/pack/task/TaskFactory.hh"
#include "../src/core/pack/types.hh"
#include "../src/core/pose/datacache/CacheableDataType.hh"
#include "../src/core/pose/datacache/CacheableObserver.fwd.hh"
#include "../src/core/pose/datacache/CacheableObserver.hh"
#include "../src/core/pose/datacache/CacheableObserverType.hh"
#include "../src/core/pose/datacache/ObserverCache.fwd.hh"
#include "../src/core/pose/datacache/ObserverCache.hh"
#include "../src/core/pose/metrics/CalculatorFactory.hh"
#include "../src/core/pose/metrics/PoseMetricCalculatorBase.fwd.hh"
#include "../src/core/pose/metrics/PoseMetricCalculatorBase.hh"
#include "../src/core/pose/metrics/PoseMetricContainer.fwd.hh"
#include "../src/core/pose/metrics/PoseMetricContainer.hh"
#include "../src/core/pose/MiniPose.fwd.hh"
#include "../src/core/pose/MiniPose.hh"
#include "../src/core/pose/PDBInfo.fwd.hh"
#include "../src/core/pose/PDBInfo.hh"
#include "../src/core/pose/PDBPoseMap.fwd.hh"
#include "../src/core/pose/PDBPoseMap.hh"
#include "../src/core/pose/Pose.fwd.hh"
#include "../src/core/pose/Pose.hh"
#include "../src/core/pose/signals/ConformationEvent.fwd.hh"
#include "../src/core/pose/signals/ConformationEvent.hh"
#include "../src/core/pose/signals/DestructionEvent.fwd.hh"
#include "../src/core/pose/signals/DestructionEvent.hh"
#include "../src/core/pose/signals/EnergyEvent.fwd.hh"
#include "../src/core/pose/signals/EnergyEvent.hh"
#include "../src/core/pose/signals/GeneralEvent.fwd.hh"
#include "../src/core/pose/signals/GeneralEvent.hh"
#include "../src/core/pose/util.hh"
#include "../src/core/scoring/AtomVDW.fwd.hh"
#include "../src/core/scoring/AtomVDW.hh"
#include "../src/core/scoring/carbon_hbonds/CarbonHBondEnergy.fwd.hh"
#include "../src/core/scoring/carbon_hbonds/CarbonHBondEnergy.hh"
#include "../src/core/scoring/carbon_hbonds/CarbonHBondEnergyCreator.hh"
#include "../src/core/scoring/carbon_hbonds/CarbonHBondPotential.fwd.hh"
#include "../src/core/scoring/carbon_hbonds/CarbonHBondPotential.hh"
#include "../src/core/scoring/constants.hh"
#include "../src/core/scoring/constraints/AmbiguousConstraint.fwd.hh"
#include "../src/core/scoring/constraints/AmbiguousConstraint.hh"
#include "../src/core/scoring/constraints/AmbiguousNMRConstraint.fwd.hh"
#include "../src/core/scoring/constraints/AmbiguousNMRConstraint.hh"
#include "../src/core/scoring/constraints/AmbiguousNMRDistanceConstraint.fwd.hh"
#include "../src/core/scoring/constraints/AmbiguousNMRDistanceConstraint.hh"
#include "../src/core/scoring/constraints/AngleConstraint.hh"
#include "../src/core/scoring/constraints/AtomPairConstraint.fwd.hh"
#include "../src/core/scoring/constraints/AtomPairConstraint.hh"
#include "../src/core/scoring/constraints/BackboneStubConstraint.fwd.hh"
#include "../src/core/scoring/constraints/BackboneStubConstraint.hh"
#include "../src/core/scoring/constraints/BigBinConstraint.hh"
#include "../src/core/scoring/constraints/BindingSiteConstraint.hh"
#include "../src/core/scoring/constraints/BoundConstraint.fwd.hh"
#include "../src/core/scoring/constraints/BoundConstraint.hh"
#include "../src/core/scoring/constraints/CharmmPeriodicFunc.hh"
#include "../src/core/scoring/constraints/CircularHarmonicFunc.fwd.hh"
#include "../src/core/scoring/constraints/CircularHarmonicFunc.hh"
#include "../src/core/scoring/constraints/CircularPowerFunc.fwd.hh"
#include "../src/core/scoring/constraints/CircularPowerFunc.hh"
#include "../src/core/scoring/constraints/CircularSigmoidalFunc.fwd.hh"
#include "../src/core/scoring/constraints/CircularSigmoidalFunc.hh"
#include "../src/core/scoring/constraints/ConstantConstraint.hh"
#include "../src/core/scoring/constraints/ConstantFunc.fwd.hh"
#include "../src/core/scoring/constraints/ConstantFunc.hh"
#include "../src/core/scoring/constraints/Constraint.fwd.hh"
#include "../src/core/scoring/constraints/Constraint.hh"
#include "../src/core/scoring/constraints/ConstraintEnergyContainer.fwd.hh"
#include "../src/core/scoring/constraints/ConstraintEnergyContainer.hh"
#include "../src/core/scoring/constraints/ConstraintFactory.hh"
#include "../src/core/scoring/constraints/ConstraintForest.fwd.hh"
#include "../src/core/scoring/constraints/ConstraintForest.hh"
#include "../src/core/scoring/constraints/ConstraintGraph.fwd.hh"
#include "../src/core/scoring/constraints/ConstraintGraph.hh"
#include "../src/core/scoring/constraints/ConstraintIO.hh"
#include "../src/core/scoring/constraints/Constraints.fwd.hh"
#include "../src/core/scoring/constraints/Constraints.hh"
#include "../src/core/scoring/constraints/ConstraintsEnergy.fwd.hh"
#include "../src/core/scoring/constraints/ConstraintsEnergy.hh"
#include "../src/core/scoring/constraints/ConstraintsEnergyCreator.hh"
#include "../src/core/scoring/constraints/ConstraintSet.fwd.hh"
#include "../src/core/scoring/constraints/ConstraintSet.hh"
#include "../src/core/scoring/constraints/CoordinateConstraint.hh"
#include "../src/core/scoring/constraints/CountViolFunc.hh"
#include "../src/core/scoring/constraints/CstMinimizationData.hh"
#include "../src/core/scoring/constraints/DihedralConstraint.hh"
#include "../src/core/scoring/constraints/DOF_Constraint.fwd.hh"
#include "../src/core/scoring/constraints/DOF_Constraint.hh"
#include "../src/core/scoring/constraints/DunbrackConstraint.fwd.hh"
#include "../src/core/scoring/constraints/DunbrackConstraint.hh"
#include "../src/core/scoring/constraints/EtableFunc.fwd.hh"
#include "../src/core/scoring/constraints/EtableFunc.hh"
#include "../src/core/scoring/constraints/FadeFunc.fwd.hh"
#include "../src/core/scoring/constraints/FadeFunc.hh"
#include "../src/core/scoring/constraints/FourPointsFunc.fwd.hh"
#include "../src/core/scoring/constraints/FourPointsFunc.hh"
#include "../src/core/scoring/constraints/Func.fwd.hh"
#include "../src/core/scoring/constraints/Func.hh"
#include "../src/core/scoring/constraints/FuncFactory.fwd.hh"
#include "../src/core/scoring/constraints/FuncFactory.hh"
#include "../src/core/scoring/constraints/GaussianFunc.fwd.hh"
#include "../src/core/scoring/constraints/GaussianFunc.hh"
#include "../src/core/scoring/constraints/HarmonicFunc.fwd.hh"
#include "../src/core/scoring/constraints/HarmonicFunc.hh"
#include "../src/core/scoring/constraints/IdentityFunc.fwd.hh"
#include "../src/core/scoring/constraints/IdentityFunc.hh"
#include "../src/core/scoring/constraints/KarplusFunc.fwd.hh"
#include "../src/core/scoring/constraints/KarplusFunc.hh"
#include "../src/core/scoring/constraints/KofNConstraint.fwd.hh"
#include "../src/core/scoring/constraints/KofNConstraint.hh"
#include "../src/core/scoring/constraints/LinearPenaltyFunction.hh"
#include "../src/core/scoring/constraints/LocalCoordinateConstraint.hh"
#include "../src/core/scoring/constraints/MinMultiHarmonicFunc.fwd.hh"
#include "../src/core/scoring/constraints/MinMultiHarmonicFunc.hh"
#include "../src/core/scoring/constraints/MixtureFunc.fwd.hh"
#include "../src/core/scoring/constraints/MixtureFunc.hh"
#include "../src/core/scoring/constraints/MultiConstraint.fwd.hh"
#include "../src/core/scoring/constraints/MultiConstraint.hh"
#include "../src/core/scoring/constraints/NamedAtomPairConstraint.fwd.hh"
#include "../src/core/scoring/constraints/NamedAtomPairConstraint.hh"
#include "../src/core/scoring/constraints/PeriodicFunc.hh"
#include "../src/core/scoring/constraints/ResidueTypeConstraint.fwd.hh"
#include "../src/core/scoring/constraints/ResidueTypeConstraint.hh"
#include "../src/core/scoring/constraints/RotamerConstraint.fwd.hh"
#include "../src/core/scoring/constraints/RotamerConstraint.hh"
#include "../src/core/scoring/constraints/ScalarWeightedFunc.fwd.hh"
#include "../src/core/scoring/constraints/ScalarWeightedFunc.hh"
#include "../src/core/scoring/constraints/SkipViolFunc.hh"
#include "../src/core/scoring/constraints/SOGFunc.fwd.hh"
#include "../src/core/scoring/constraints/SOGFunc.hh"
#include "../src/core/scoring/constraints/SOGFunc_Impl.fwd.hh"
#include "../src/core/scoring/constraints/SOGFunc_Impl.hh"
#include "../src/core/scoring/constraints/SplineFunc.fwd.hh"
#include "../src/core/scoring/constraints/SplineFunc.hh"
#include "../src/core/scoring/constraints/SquareWellFunc.fwd.hh"
#include "../src/core/scoring/constraints/SquareWellFunc.hh"
#include "../src/core/scoring/constraints/SumFunc.hh"
#include "../src/core/scoring/constraints/util.hh"
#include "../src/core/scoring/constraints/XYZ_Func.fwd.hh"
#include "../src/core/scoring/constraints/XYZ_Func.hh"
#include "../src/core/scoring/ContextGraph.fwd.hh"
#include "../src/core/scoring/ContextGraph.hh"
#include "../src/core/scoring/ContextGraphFactory.fwd.hh"
#include "../src/core/scoring/ContextGraphFactory.hh"
#include "../src/core/scoring/ContextGraphTypes.hh"
#include "../src/core/scoring/custom_pair_distance/FullatomCustomPairDistanceEnergy.fwd.hh"
#include "../src/core/scoring/custom_pair_distance/FullatomCustomPairDistanceEnergy.hh"
#include "../src/core/scoring/custom_pair_distance/FullatomCustomPairDistanceEnergyCreator.hh"
#include "../src/core/scoring/DenseEnergyContainer.fwd.hh"
#include "../src/core/scoring/DenseEnergyContainer.hh"
#include "../src/core/scoring/DerivVectorPair.fwd.hh"
#include "../src/core/scoring/DerivVectorPair.hh"
#include "../src/core/scoring/disulfides/CentroidDisulfideEnergy.fwd.hh"
#include "../src/core/scoring/disulfides/CentroidDisulfideEnergy.hh"
#include "../src/core/scoring/disulfides/CentroidDisulfideEnergyContainer.fwd.hh"
#include "../src/core/scoring/disulfides/CentroidDisulfideEnergyContainer.hh"
#include "../src/core/scoring/disulfides/CentroidDisulfideEnergyCreator.hh"
#include "../src/core/scoring/disulfides/CentroidDisulfidePotential.fwd.hh"
#include "../src/core/scoring/disulfides/CentroidDisulfidePotential.hh"
#include "../src/core/scoring/disulfides/DisulfideAtomIndices.fwd.hh"
#include "../src/core/scoring/disulfides/DisulfideAtomIndices.hh"
#include "../src/core/scoring/disulfides/DisulfideMatchingDatabase.hh"
#include "../src/core/scoring/disulfides/DisulfideMatchingEnergy.fwd.hh"
#include "../src/core/scoring/disulfides/DisulfideMatchingEnergy.hh"
#include "../src/core/scoring/disulfides/DisulfideMatchingEnergyContainer.fwd.hh"
#include "../src/core/scoring/disulfides/DisulfideMatchingEnergyContainer.hh"
#include "../src/core/scoring/disulfides/DisulfideMatchingEnergyCreator.hh"
#include "../src/core/scoring/disulfides/DisulfideMatchingPotential.fwd.hh"
#include "../src/core/scoring/disulfides/DisulfideMatchingPotential.hh"
#include "../src/core/scoring/disulfides/FullatomDisulfideEnergy.fwd.hh"
#include "../src/core/scoring/disulfides/FullatomDisulfideEnergy.hh"
#include "../src/core/scoring/disulfides/FullatomDisulfideEnergyContainer.fwd.hh"
#include "../src/core/scoring/disulfides/FullatomDisulfideEnergyContainer.hh"
#include "../src/core/scoring/disulfides/FullatomDisulfideEnergyCreator.hh"
#include "../src/core/scoring/disulfides/FullatomDisulfidePotential.fwd.hh"
#include "../src/core/scoring/disulfides/FullatomDisulfidePotential.hh"
#include "../src/core/scoring/dna/base_geometry.hh"
#include "../src/core/scoring/dna/BasePartner.fwd.hh"
#include "../src/core/scoring/dna/BasePartner.hh"
#include "../src/core/scoring/dna/DirectReadoutPotential.fwd.hh"
#include "../src/core/scoring/dna/DirectReadoutPotential.hh"
#include "../src/core/scoring/dna/DNA_BasePotential.fwd.hh"
#include "../src/core/scoring/dna/DNA_BasePotential.hh"
#include "../src/core/scoring/dna/scoring.hh"
#include "../src/core/scoring/dna/setup.hh"
#include "../src/core/scoring/dssp/Dssp.hh"
#include "../src/core/scoring/dssp/PairingsList.fwd.hh"
#include "../src/core/scoring/dssp/PairingsList.hh"
#include "../src/core/scoring/dssp/StrandPairing.fwd.hh"
#include "../src/core/scoring/dssp/StrandPairing.hh"
#include "../src/core/scoring/dssp/util.hh"
#include "../src/core/scoring/dunbrack/ChiSet.fwd.hh"
#include "../src/core/scoring/dunbrack/ChiSet.hh"
#include "../src/core/scoring/dunbrack/CoarseRotamer.fwd.hh"
#include "../src/core/scoring/dunbrack/CoarseRotamer.hh"
#include "../src/core/scoring/dunbrack/CoarseSingleResidueLibrary.fwd.hh"
#include "../src/core/scoring/dunbrack/CoarseSingleResidueLibrary.hh"
#include "../src/core/scoring/dunbrack/DunbrackRotamer.fwd.hh"
#include "../src/core/scoring/dunbrack/DunbrackRotamer.hh"
#include "../src/core/scoring/dunbrack/RotamericSingleResidueDunbrackLibrary.fwd.hh"
#include "../src/core/scoring/dunbrack/RotamericSingleResidueDunbrackLibrary.hh"
#include "../src/core/scoring/dunbrack/RotamericSingleResidueDunbrackLibrary.tmpl.hh"
#include "../src/core/scoring/dunbrack/RotamerLibrary.fwd.hh"
#include "../src/core/scoring/dunbrack/RotamerLibrary.hh"
#include "../src/core/scoring/dunbrack/RotamerLibraryScratchSpace.fwd.hh"
#include "../src/core/scoring/dunbrack/RotamerLibraryScratchSpace.hh"
#include "../src/core/scoring/dunbrack/SemiRotamericSingleResidueDunbrackLibrary.fwd.hh"
#include "../src/core/scoring/dunbrack/SemiRotamericSingleResidueDunbrackLibrary.hh"
#include "../src/core/scoring/dunbrack/SemiRotamericSingleResidueDunbrackLibrary.tmpl.hh"
#include "../src/core/scoring/dunbrack/SingleLigandRotamerLibrary.hh"
#include "../src/core/scoring/dunbrack/SingleResidueDunbrackLibrary.fwd.hh"
#include "../src/core/scoring/dunbrack/SingleResidueDunbrackLibrary.hh"
#include "../src/core/scoring/dunbrack/SingleResidueDunbrackLibrary.tmpl.hh"
#include "../src/core/scoring/electron_density/ElecDensAllAtomCenEnergy.hh"
#include "../src/core/scoring/electron_density/ElecDensAllAtomCenEnergyCreator.hh"
#include "../src/core/scoring/electron_density/ElecDensCenEnergy.hh"
#include "../src/core/scoring/electron_density/ElecDensCenEnergyCreator.hh"
#include "../src/core/scoring/electron_density/ElecDensEnergies.fwd.hh"
#include "../src/core/scoring/electron_density/ElecDensEnergy.hh"
#include "../src/core/scoring/electron_density/ElecDensEnergyCreator.hh"
#include "../src/core/scoring/electron_density/ElectronDensity.fwd.hh"
#include "../src/core/scoring/electron_density/ElectronDensity.hh"
#include "../src/core/scoring/electron_density/PattersonCorrEnergy.hh"
#include "../src/core/scoring/electron_density/PattersonCorrEnergyCreator.hh"
#include "../src/core/scoring/electron_density/SplineInterp.hh"
#include "../src/core/scoring/electron_density/util.hh"
#include "../src/core/scoring/electron_density/xray_scattering.hh"
#include "../src/core/scoring/Energies.fwd.hh"
#include "../src/core/scoring/Energies.hh"
#include "../src/core/scoring/EnergiesCacheableDataType.hh"
#include "../src/core/scoring/EnergyGraph.fwd.hh"
#include "../src/core/scoring/EnergyGraph.hh"
#include "../src/core/scoring/EnergyMap.fwd.hh"
#include "../src/core/scoring/EnergyMap.hh"
#include "../src/core/scoring/EnvPairPotential.fwd.hh"
#include "../src/core/scoring/EnvPairPotential.hh"
#include "../src/core/scoring/etable/atom_pair_energy_inline.hh"
#include "../src/core/scoring/etable/BaseEtableEnergy.hh"
#include "../src/core/scoring/etable/BaseEtableEnergy.tmpl.hh"
#include "../src/core/scoring/etable/BaseMembEtableEnergy.hh"
#include "../src/core/scoring/etable/CoarseEtableEnergy.fwd.hh"
#include "../src/core/scoring/etable/CoarseEtableEnergy.hh"
#include "../src/core/scoring/etable/CoarseEtableEnergyCreator.hh"
#include "../src/core/scoring/etable/count_pair/CountPair1B.fwd.hh"
#include "../src/core/scoring/etable/count_pair/CountPair1B.hh"
#include "../src/core/scoring/etable/count_pair/CountPairAll.fwd.hh"
#include "../src/core/scoring/etable/count_pair/CountPairAll.hh"
#include "../src/core/scoring/etable/count_pair/CountPairCrossover3.fwd.hh"
#include "../src/core/scoring/etable/count_pair/CountPairCrossover3.hh"
#include "../src/core/scoring/etable/count_pair/CountPairCrossover4.fwd.hh"
#include "../src/core/scoring/etable/count_pair/CountPairCrossover4.hh"
#include "../src/core/scoring/etable/count_pair/CountPairFactory.fwd.hh"
#include "../src/core/scoring/etable/count_pair/CountPairFactory.hh"
#include "../src/core/scoring/etable/count_pair/CountPairFunction.fwd.hh"
#include "../src/core/scoring/etable/count_pair/CountPairFunction.hh"
#include "../src/core/scoring/etable/count_pair/CountPairGeneric.fwd.hh"
#include "../src/core/scoring/etable/count_pair/CountPairGeneric.hh"
#include "../src/core/scoring/etable/count_pair/CountPairIntraRes.fwd.hh"
#include "../src/core/scoring/etable/count_pair/CountPairIntraRes.hh"
#include "../src/core/scoring/etable/count_pair/CountPairIntraResC3.fwd.hh"
#include "../src/core/scoring/etable/count_pair/CountPairIntraResC3.hh"
#include "../src/core/scoring/etable/count_pair/CountPairIntraResC4.fwd.hh"
#include "../src/core/scoring/etable/count_pair/CountPairIntraResC4.hh"
#include "../src/core/scoring/etable/count_pair/CountPairNone.fwd.hh"
#include "../src/core/scoring/etable/count_pair/CountPairNone.hh"
#include "../src/core/scoring/etable/count_pair/types.hh"
#include "../src/core/scoring/etable/Etable.fwd.hh"
#include "../src/core/scoring/etable/Etable.hh"
#include "../src/core/scoring/etable/EtableEnergy.fwd.hh"
#include "../src/core/scoring/etable/EtableEnergy.hh"
#include "../src/core/scoring/etable/EtableEnergyCreator.hh"
#include "../src/core/scoring/etable/EtableOptions.hh"
#include "../src/core/scoring/etable/etrie/CountPairData_1_1.fwd.hh"
#include "../src/core/scoring/etable/etrie/CountPairData_1_1.hh"
#include "../src/core/scoring/etable/etrie/CountPairData_1_2.fwd.hh"
#include "../src/core/scoring/etable/etrie/CountPairData_1_2.hh"
#include "../src/core/scoring/etable/etrie/CountPairData_1_3.fwd.hh"
#include "../src/core/scoring/etable/etrie/CountPairData_1_3.hh"
#include "../src/core/scoring/etable/etrie/CountPairDataGeneric.fwd.hh"
#include "../src/core/scoring/etable/etrie/CountPairDataGeneric.hh"
#include "../src/core/scoring/etable/etrie/EtableAtom.fwd.hh"
#include "../src/core/scoring/etable/etrie/EtableAtom.hh"
#include "../src/core/scoring/etable/etrie/EtableTrie.fwd.hh"
#include "../src/core/scoring/etable/etrie/TrieCountPair1BC3.fwd.hh"
#include "../src/core/scoring/etable/etrie/TrieCountPair1BC3.hh"
#include "../src/core/scoring/etable/etrie/TrieCountPair1BC4.fwd.hh"
#include "../src/core/scoring/etable/etrie/TrieCountPair1BC4.hh"
#include "../src/core/scoring/etable/etrie/TrieCountPairAll.fwd.hh"
#include "../src/core/scoring/etable/etrie/TrieCountPairAll.hh"
#include "../src/core/scoring/etable/etrie/TrieCountPairGeneric.fwd.hh"
#include "../src/core/scoring/etable/etrie/TrieCountPairGeneric.hh"
#include "../src/core/scoring/etable/etrie/TrieCountPairNone.fwd.hh"
#include "../src/core/scoring/etable/etrie/TrieCountPairNone.hh"
#include "../src/core/scoring/etable/MembEtable.fwd.hh"
#include "../src/core/scoring/etable/MembEtable.hh"
#include "../src/core/scoring/GenBornPotential.fwd.hh"
#include "../src/core/scoring/GenBornPotential.hh"
#include "../src/core/scoring/geometric_solvation/DatabaseOccSolEne.fwd.hh"
#include "../src/core/scoring/geometric_solvation/DatabaseOccSolEne.hh"
#include "../src/core/scoring/geometric_solvation/ExactOccludedHbondSolEnergy.hh"
#include "../src/core/scoring/geometric_solvation/ExactOccludedHbondSolEnergyCreator.hh"
#include "../src/core/scoring/geometric_solvation/GeometricSolEnergy.fwd.hh"
#include "../src/core/scoring/geometric_solvation/GeometricSolEnergy.hh"
#include "../src/core/scoring/geometric_solvation/GeometricSolEnergyCreator.hh"
#include "../src/core/scoring/geometric_solvation/non_scorefxn_exact_model.hh"
#include "../src/core/scoring/geometric_solvation/OccludedHbondSolEnergy.fwd.hh"
#include "../src/core/scoring/geometric_solvation/OccludedHbondSolEnergy.hh"
#include "../src/core/scoring/geometric_solvation/OccludedHbondSolEnergyCreator.hh"
#include "../src/core/scoring/hackaro/HackAroEnergy.fwd.hh"
#include "../src/core/scoring/hackaro/HackAroEnergy.hh"
#include "../src/core/scoring/hackaro/HackAroEnergyCreator.hh"
#include "../src/core/scoring/hackelec/ElecAtom.fwd.hh"
#include "../src/core/scoring/hackelec/ElecAtom.hh"
#include "../src/core/scoring/hackelec/HackElecEnergy.fwd.hh"
#include "../src/core/scoring/hackelec/HackElecEnergy.hh"
#include "../src/core/scoring/hackelec/HackElecEnergyAroAro.fwd.hh"
#include "../src/core/scoring/hackelec/HackElecEnergyAroAro.hh"
#include "../src/core/scoring/hackelec/HackElecEnergyAroAroCreator.hh"
#include "../src/core/scoring/hackelec/HackElecEnergyCreator.hh"
#include "../src/core/scoring/hackelec/RNAHackElecEnergy.fwd.hh"
#include "../src/core/scoring/hackelec/RNAHackElecEnergy.hh"
#include "../src/core/scoring/hackelec/RNAHackElecEnergyCreator.hh"
#include "../src/core/scoring/hbonds/constants.hh"
#include "../src/core/scoring/hbonds/create_poly.hh"
#include "../src/core/scoring/hbonds/FadeInterval.fwd.hh"
#include "../src/core/scoring/hbonds/FadeInterval.hh"
#include "../src/core/scoring/hbonds/HBondDatabase.fwd.hh"
#include "../src/core/scoring/hbonds/HBondDatabase.hh"
#include "../src/core/scoring/hbonds/HBondEnergy.fwd.hh"
#include "../src/core/scoring/hbonds/HBondEnergy.hh"
#include "../src/core/scoring/hbonds/HBondEnergyCreator.hh"
#include "../src/core/scoring/hbonds/HBondOptions.fwd.hh"
#include "../src/core/scoring/hbonds/HBondOptions.hh"
#include "../src/core/scoring/hbonds/hbonds.hh"
#include "../src/core/scoring/hbonds/hbonds_geom.hh"
#include "../src/core/scoring/hbonds/HBondSet.fwd.hh"
#include "../src/core/scoring/hbonds/HBondSet.hh"
#include "../src/core/scoring/hbonds/HBondTypeManager.fwd.hh"
#include "../src/core/scoring/hbonds/HBondTypeManager.hh"
#include "../src/core/scoring/hbonds/hbtrie/HBAtom.fwd.hh"
#include "../src/core/scoring/hbonds/hbtrie/HBAtom.hh"
#include "../src/core/scoring/hbonds/hbtrie/HBCountPairFunction.fwd.hh"
#include "../src/core/scoring/hbonds/hbtrie/HBCountPairFunction.hh"
#include "../src/core/scoring/hbonds/hbtrie/HBCPData.fwd.hh"
#include "../src/core/scoring/hbonds/hbtrie/HBCPData.hh"
#include "../src/core/scoring/hbonds/hbtrie/HBondTrie.fwd.hh"
#include "../src/core/scoring/hbonds/polynomial.fwd.hh"
#include "../src/core/scoring/hbonds/polynomial.hh"
#include "../src/core/scoring/hbonds/polynomial_potentials.hh"
#include "../src/core/scoring/hbonds/types.hh"
#include "../src/core/scoring/InterchainPotential.fwd.hh"
#include "../src/core/scoring/InterchainPotential.hh"
#include "../src/core/scoring/Interface/DDPlookup.fwd.hh"
#include "../src/core/scoring/Interface/DDPlookup.hh"
#include "../src/core/scoring/Interface/DDPscore.fwd.hh"
#include "../src/core/scoring/Interface/DDPscore.hh"
#include "../src/core/scoring/Interface/DDPscoreCreator.hh"
#include "../src/core/scoring/interpolation_util.hh"
#include "../src/core/scoring/LREnergyContainer.fwd.hh"
#include "../src/core/scoring/LREnergyContainer.hh"
#include "../src/core/scoring/memb_etable/BaseMembEtableEnergy.hh"
#include "../src/core/scoring/memb_etable/MembEtable.fwd.hh"
#include "../src/core/scoring/memb_etable/MembEtable.hh"
#include "../src/core/scoring/Membrane_FAPotential.fwd.hh"
#include "../src/core/scoring/Membrane_FAPotential.hh"
#include "../src/core/scoring/MembranePotential.fwd.hh"
#include "../src/core/scoring/MembranePotential.hh"
#include "../src/core/scoring/MembraneTopology.fwd.hh"
#include "../src/core/scoring/MembraneTopology.hh"
#include "../src/core/scoring/methods/CenPairEnergy.hh"
#include "../src/core/scoring/methods/CenPairEnergyCreator.hh"
#include "../src/core/scoring/methods/ChainbreakEnergy.fwd.hh"
#include "../src/core/scoring/methods/ChainbreakEnergy.hh"
#include "../src/core/scoring/methods/ChainbreakEnergyCreator.hh"
#include "../src/core/scoring/methods/ContactOrderEnergy.hh"
#include "../src/core/scoring/methods/ContactOrderEnergyCreator.hh"
#include "../src/core/scoring/methods/ContextDependentLRTwoBodyEnergy.fwd.hh"
#include "../src/core/scoring/methods/ContextDependentLRTwoBodyEnergy.hh"
#include "../src/core/scoring/methods/ContextDependentOneBodyEnergy.fwd.hh"
#include "../src/core/scoring/methods/ContextDependentOneBodyEnergy.hh"
#include "../src/core/scoring/methods/ContextDependentTwoBodyEnergy.fwd.hh"
#include "../src/core/scoring/methods/ContextDependentTwoBodyEnergy.hh"
#include "../src/core/scoring/methods/ContextIndependentLRTwoBodyEnergy.fwd.hh"
#include "../src/core/scoring/methods/ContextIndependentLRTwoBodyEnergy.hh"
#include "../src/core/scoring/methods/ContextIndependentOneBodyEnergy.fwd.hh"
#include "../src/core/scoring/methods/ContextIndependentOneBodyEnergy.hh"
#include "../src/core/scoring/methods/ContextIndependentTwoBodyEnergy.fwd.hh"
#include "../src/core/scoring/methods/ContextIndependentTwoBodyEnergy.hh"
#include "../src/core/scoring/methods/CSD_TorsionEnergy.fwd.hh"
#include "../src/core/scoring/methods/CSD_TorsionEnergy.hh"
#include "../src/core/scoring/methods/CustomAtomPairEnergy.fwd.hh"
#include "../src/core/scoring/methods/CustomAtomPairEnergy.hh"
#include "../src/core/scoring/methods/CustomAtomPairEnergyCreator.hh"
#include "../src/core/scoring/methods/DirectReadoutEnergy.fwd.hh"
#include "../src/core/scoring/methods/DirectReadoutEnergy.hh"
#include "../src/core/scoring/methods/DirectReadoutEnergyCreator.hh"
#include "../src/core/scoring/methods/DistanceChainbreakEnergy.fwd.hh"
#include "../src/core/scoring/methods/DistanceChainbreakEnergy.hh"
#include "../src/core/scoring/methods/DistanceChainbreakEnergyCreator.hh"
#include "../src/core/scoring/methods/DNA_BaseEnergy.fwd.hh"
#include "../src/core/scoring/methods/DNA_BaseEnergy.hh"
#include "../src/core/scoring/methods/DNA_BaseEnergyCreator.hh"
#include "../src/core/scoring/methods/DunbrackEnergy.fwd.hh"
#include "../src/core/scoring/methods/DunbrackEnergy.hh"
#include "../src/core/scoring/methods/DunbrackEnergyCreator.hh"
#include "../src/core/scoring/methods/EnergyMethod.fwd.hh"
#include "../src/core/scoring/methods/EnergyMethod.hh"
#include "../src/core/scoring/methods/EnergyMethodCreator.fwd.hh"
#include "../src/core/scoring/methods/EnergyMethodCreator.hh"
#include "../src/core/scoring/methods/EnergyMethodOptions.fwd.hh"
#include "../src/core/scoring/methods/EnergyMethodOptions.hh"
#include "../src/core/scoring/methods/EnergyMethodRegisterer.hh"
#include "../src/core/scoring/methods/EnvEnergy.hh"
#include "../src/core/scoring/methods/EnvEnergyCreator.hh"
#include "../src/core/scoring/methods/EnvPairEnergy.fwd.hh"
#include "../src/core/scoring/methods/EnvSmoothEnergy.fwd.hh"
#include "../src/core/scoring/methods/EnvSmoothEnergy.hh"
#include "../src/core/scoring/methods/EnvSmoothEnergyCreator.hh"
#include "../src/core/scoring/methods/Fa_MbenvEnergy.fwd.hh"
#include "../src/core/scoring/methods/Fa_MbenvEnergy.hh"
#include "../src/core/scoring/methods/Fa_MbenvEnergyCreator.hh"
#include "../src/core/scoring/methods/Fa_MbsolvEnergy.fwd.hh"
#include "../src/core/scoring/methods/Fa_MbsolvEnergy.hh"
#include "../src/core/scoring/methods/Fa_MbsolvEnergyCreator.hh"
#include "../src/core/scoring/methods/GenBornEnergy.fwd.hh"
#include "../src/core/scoring/methods/GenBornEnergy.hh"
#include "../src/core/scoring/methods/GenBornEnergyCreator.hh"
#include "../src/core/scoring/methods/HPatchEnergy.fwd.hh"
#include "../src/core/scoring/methods/HPatchEnergy.hh"
#include "../src/core/scoring/methods/HPatchEnergyCreator.hh"
#include "../src/core/scoring/methods/HybridVDW_Energy.fwd.hh"
#include "../src/core/scoring/methods/HybridVDW_Energy.hh"
#include "../src/core/scoring/methods/HybridVDW_EnergyCreator.hh"
#include "../src/core/scoring/methods/InterchainEnergy.fwd.hh"
#include "../src/core/scoring/methods/InterchainEnvEnergy.hh"
#include "../src/core/scoring/methods/InterchainEnvEnergyCreator.hh"
#include "../src/core/scoring/methods/InterchainPairEnergy.hh"
#include "../src/core/scoring/methods/InterchainPairEnergyCreator.hh"
#include "../src/core/scoring/methods/LinearChainbreakEnergy.fwd.hh"
#include "../src/core/scoring/methods/LinearChainbreakEnergy.hh"
#include "../src/core/scoring/methods/LinearChainbreakEnergyCreator.hh"
#include "../src/core/scoring/methods/LK_CosThetaEnergy.fwd.hh"
#include "../src/core/scoring/methods/LK_CosThetaEnergy.hh"
#include "../src/core/scoring/methods/LK_CosThetaEnergyCreator.hh"
#include "../src/core/scoring/methods/LK_hack.fwd.hh"
#include "../src/core/scoring/methods/LK_hack.hh"
#include "../src/core/scoring/methods/LK_hackCreator.hh"
#include "../src/core/scoring/methods/LongRangeTwoBodyEnergy.fwd.hh"
#include "../src/core/scoring/methods/LongRangeTwoBodyEnergy.hh"
#include "../src/core/scoring/methods/MembraneCbetaEnergy.fwd.hh"
#include "../src/core/scoring/methods/MembraneCbetaEnergy.hh"
#include "../src/core/scoring/methods/MembraneCbetaEnergyCreator.hh"
#include "../src/core/scoring/methods/MembraneCenPairEnergy.fwd.hh"
#include "../src/core/scoring/methods/MembraneCenPairEnergy.hh"
#include "../src/core/scoring/methods/MembraneCenPairEnergyCreator.hh"
#include "../src/core/scoring/methods/MembraneEnvEnergy.fwd.hh"
#include "../src/core/scoring/methods/MembraneEnvEnergy.hh"
#include "../src/core/scoring/methods/MembraneEnvEnergyCreator.hh"
#include "../src/core/scoring/methods/MembraneEnvPenalties.fwd.hh"
#include "../src/core/scoring/methods/MembraneEnvPenalties.hh"
#include "../src/core/scoring/methods/MembraneEnvPenaltiesCreator.hh"
#include "../src/core/scoring/methods/MembraneEnvSmoothEnergy.fwd.hh"
#include "../src/core/scoring/methods/MembraneEnvSmoothEnergy.hh"
#include "../src/core/scoring/methods/MembraneEnvSmoothEnergyCreator.hh"
#include "../src/core/scoring/methods/MembraneLipo.fwd.hh"
#include "../src/core/scoring/methods/MembraneLipo.hh"
#include "../src/core/scoring/methods/MembraneLipoCreator.hh"
#include "../src/core/scoring/methods/MetalloPlacementEnergy.fwd.hh"
#include "../src/core/scoring/methods/MetalloPlacementEnergy.hh"
#include "../src/core/scoring/methods/Methods.hh"
#include "../src/core/scoring/methods/MMBondAngleEnergy.fwd.hh"
#include "../src/core/scoring/methods/MMBondAngleEnergy.hh"
#include "../src/core/scoring/methods/MMBondAngleEnergyCreator.hh"
#include "../src/core/scoring/methods/MMLJEnergyInter.fwd.hh"
#include "../src/core/scoring/methods/MMLJEnergyInter.hh"
#include "../src/core/scoring/methods/MMLJEnergyInterCreator.hh"
#include "../src/core/scoring/methods/MMLJEnergyIntra.fwd.hh"
#include "../src/core/scoring/methods/MMLJEnergyIntra.hh"
#include "../src/core/scoring/methods/MMLJEnergyIntraCreator.hh"
#include "../src/core/scoring/methods/MMTorsionEnergy.fwd.hh"
#include "../src/core/scoring/methods/MMTorsionEnergy.hh"
#include "../src/core/scoring/methods/MMTorsionEnergyCreator.hh"
#include "../src/core/scoring/methods/OmegaTetherEnergy.fwd.hh"
#include "../src/core/scoring/methods/OmegaTetherEnergy.hh"
#include "../src/core/scoring/methods/OmegaTetherEnergyCreator.hh"
#include "../src/core/scoring/methods/OneBodyEnergy.fwd.hh"
#include "../src/core/scoring/methods/OneBodyEnergy.hh"
#include "../src/core/scoring/methods/P_AA_Energy.fwd.hh"
#include "../src/core/scoring/methods/P_AA_Energy.hh"
#include "../src/core/scoring/methods/P_AA_EnergyCreator.hh"
#include "../src/core/scoring/methods/P_AA_pp_Energy.fwd.hh"
#include "../src/core/scoring/methods/P_AA_pp_Energy.hh"
#include "../src/core/scoring/methods/P_AA_pp_EnergyCreator.hh"
#include "../src/core/scoring/methods/PackStatEnergy.hh"
#include "../src/core/scoring/methods/PackStatEnergyCreator.hh"
#include "../src/core/scoring/methods/PairEnergy.fwd.hh"
#include "../src/core/scoring/methods/PairEnergy.hh"
#include "../src/core/scoring/methods/PairEnergyCreator.hh"
#include "../src/core/scoring/methods/PCS/GridSearchIterator.fwd.hh"
#include "../src/core/scoring/methods/PCS/GridSearchIterator.hh"
#include "../src/core/scoring/methods/PCS/PseudocontactShiftData.fwd.hh"
#include "../src/core/scoring/methods/PCS/PseudocontactShiftData.hh"
#include "../src/core/scoring/methods/PCS/PseudocontactShiftEnergy.fwd.hh"
#include "../src/core/scoring/methods/PCS/PseudocontactShiftEnergy.hh"
#include "../src/core/scoring/methods/PCS/PseudocontactShiftEnergyCreator.hh"
#include "../src/core/scoring/methods/PCS/PseudocontactShiftInput.fwd.hh"
#include "../src/core/scoring/methods/PCS/PseudocontactShiftInput.hh"
#include "../src/core/scoring/methods/PCS/PseudocontactShiftTensor.fwd.hh"
#include "../src/core/scoring/methods/PCS/PseudocontactShiftTensor.hh"
#include "../src/core/scoring/methods/PCS/TensorsOptimizer.fwd.hh"
#include "../src/core/scoring/methods/PCS/TensorsOptimizer.hh"
#include "../src/protocols/scoring/methods/PCS2/GridSearchIterator.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/GridSearchIterator.hh"
#include "../src/protocols/scoring/methods/PCS2/GridSearchIteratorCA.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/GridSearchIteratorCA.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsDataCenter.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsDataCenter.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsDataCenterManager.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsDataCenterManager.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsDataCenterManagerSingleton.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsDataCenterManagerSingleton.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsDataLanthanide.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsDataLanthanide.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsEnergy.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsEnergy.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsEnergyCreator.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsEnergyParameter.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsEnergyParameter.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsEnergyParameterManager.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsEnergyParameterManager.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsGridSearchParameter.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsGridSearchParameter.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsGridSearchParameterManager.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsGridSearchParameterManager.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsInputCenter.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsInputCenter.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsInputCenterManager.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsInputCenterManager.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsInputFile.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsInputFile.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsInputLine.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsInputLine.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsTensor.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/PcsTensor.hh"
#include "../src/protocols/scoring/methods/PCS2/TensorsOptimizer.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/TensorsOptimizer.hh"
#include "../src/protocols/scoring/methods/PCS2/TensorsOptimizerFix.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/TensorsOptimizerFix.hh"
#include "../src/protocols/scoring/methods/PCS2/TensorsOptimizerSvd.fwd.hh"
#include "../src/protocols/scoring/methods/PCS2/TensorsOptimizerSvd.hh"
#include "../src/core/scoring/methods/PeptideBondEnergy.fwd.hh"
#include "../src/core/scoring/methods/PeptideBondEnergy.hh"
#include "../src/core/scoring/methods/PeptideBondEnergyCreator.hh"
#include "../src/core/scoring/methods/pHEnergy.fwd.hh"
#include "../src/core/scoring/methods/pHEnergy.hh"
#include "../src/core/scoring/methods/pHEnergyCreator.hh"
#include "../src/core/scoring/methods/ProClosureEnergy.fwd.hh"
#include "../src/core/scoring/methods/ProClosureEnergy.hh"
#include "../src/core/scoring/methods/ProClosureEnergyCreator.hh"
#include "../src/core/scoring/methods/RamachandranEnergy.fwd.hh"
#include "../src/core/scoring/methods/RamachandranEnergy.hh"
#include "../src/core/scoring/methods/RamachandranEnergy2B.fwd.hh"
#include "../src/core/scoring/methods/RamachandranEnergy2B.hh"
#include "../src/core/scoring/methods/RamachandranEnergy2BCreator.hh"
#include "../src/core/scoring/methods/RamachandranEnergyCreator.hh"
#include "../src/core/scoring/methods/ReferenceEnergy.fwd.hh"
#include "../src/core/scoring/methods/ReferenceEnergy.hh"
#include "../src/core/scoring/methods/ReferenceEnergyCreator.hh"
#include "../src/core/scoring/methods/ResidualDipolarCouplingEnergy.fwd.hh"
#include "../src/core/scoring/methods/ResidualDipolarCouplingEnergy.hh"
#include "../src/core/scoring/methods/ResidualDipolarCouplingEnergy_Rohl.hh"
#include "../src/core/scoring/methods/ResidualDipolarCouplingEnergy_RohlCreator.hh"
#include "../src/core/scoring/methods/ResidualDipolarCouplingEnergyCreator.hh"
#include "../src/core/scoring/methods/ResidualDipolarCouplingEnergyRigidSegments.fwd.hh"
#include "../src/core/scoring/methods/ResidualDipolarCouplingEnergyRigidSegments.hh"
#include "../src/core/scoring/methods/RG_Energy.hh"
#include "../src/core/scoring/methods/RG_Energy_Fast.hh"
#include "../src/core/scoring/methods/RG_Energy_FastCreator.hh"
#include "../src/core/scoring/methods/RMS_Energy.hh"
#include "../src/core/scoring/methods/RMS_EnergyCreator.hh"
#include "../src/core/scoring/methods/SA_Energy.hh"
#include "../src/core/scoring/methods/SA_EnergyCreator.hh"
#include "../src/core/scoring/methods/SecondaryStructureEnergy.fwd.hh"
#include "../src/core/scoring/methods/SecondaryStructureEnergy.hh"
#include "../src/core/scoring/methods/SecondaryStructureEnergyCreator.hh"
#include "../src/core/scoring/methods/ShortRangeTwoBodyEnergy.fwd.hh"
#include "../src/core/scoring/methods/ShortRangeTwoBodyEnergy.hh"
#include "../src/core/scoring/methods/SuckerEnergy.fwd.hh"
#include "../src/core/scoring/methods/SuckerEnergy.hh"
#include "../src/core/scoring/methods/SuckerEnergyCreator.hh"
#include "../src/core/scoring/methods/SurfaceEnergy.fwd.hh"
#include "../src/core/scoring/methods/SurfaceEnergy.hh"
#include "../src/core/scoring/methods/SurfaceEnergyCreator.hh"
#include "../src/core/scoring/methods/SymmetricLigandEnergy.fwd.hh"
#include "../src/core/scoring/methods/SymmetricLigandEnergy.hh"
#include "../src/core/scoring/methods/SymmetricLigandEnergyCreator.hh"
#include "../src/core/scoring/methods/TwoBodyEnergy.fwd.hh"
#include "../src/core/scoring/methods/TwoBodyEnergy.hh"
#include "../src/core/scoring/methods/UnfoldedStateEnergy.fwd.hh"
#include "../src/core/scoring/methods/UnfoldedStateEnergy.hh"
#include "../src/core/scoring/methods/UnfoldedStateEnergyCreator.hh"
#include "../src/core/scoring/methods/util.hh"
#include "../src/core/scoring/methods/VDW_Energy.fwd.hh"
#include "../src/core/scoring/methods/VDW_Energy.hh"
#include "../src/core/scoring/methods/VDW_EnergyCreator.hh"
#include "../src/core/scoring/methods/WaterAdductHBondEnergy.fwd.hh"
#include "../src/core/scoring/methods/WaterAdductHBondEnergy.hh"
#include "../src/core/scoring/methods/WaterAdductHBondEnergyCreator.hh"
#include "../src/core/scoring/methods/WaterAdductIntraEnergy.fwd.hh"
#include "../src/core/scoring/methods/WaterAdductIntraEnergy.hh"
#include "../src/core/scoring/methods/WaterAdductIntraEnergyCreator.hh"
#include "../src/core/scoring/methods/WholeStructureEnergy.fwd.hh"
#include "../src/core/scoring/methods/WholeStructureEnergy.hh"
#include "../src/core/scoring/MinimizationData.fwd.hh"
#include "../src/core/scoring/MinimizationData.hh"
#include "../src/core/scoring/MinimizationGraph.fwd.hh"
#include "../src/core/scoring/MinimizationGraph.hh"
#include "../src/core/scoring/NeighborList.fwd.hh"
#include "../src/core/scoring/NeighborList.hh"
#include "../src/core/scoring/NeighborList.tmpl.hh"
#include "../src/core/scoring/NV/NVlookup.fwd.hh"
#include "../src/core/scoring/NV/NVlookup.hh"
#include "../src/core/scoring/NV/NVscore.fwd.hh"
#include "../src/core/scoring/NV/NVscore.hh"
#include "../src/core/scoring/NV/NVscoreCreator.hh"
#include "../src/core/scoring/OmegaTether.fwd.hh"
#include "../src/core/scoring/OmegaTether.hh"
#include "../src/core/scoring/OneToAllEnergyContainer.fwd.hh"
#include "../src/core/scoring/OneToAllEnergyContainer.hh"
#include "../src/core/scoring/orbitals/OrbitalsAssigned.hh"
#include "../src/core/scoring/orbitals/OrbitalsLookup.fwd.hh"
#include "../src/core/scoring/orbitals/OrbitalsLookup.hh"
#include "../src/core/scoring/orbitals/OrbitalsScore.fwd.hh"
#include "../src/core/scoring/orbitals/OrbitalsScore.hh"
#include "../src/core/scoring/orbitals/OrbitalsScoreCreator.hh"
#include "../src/core/scoring/P_AA.fwd.hh"
#include "../src/core/scoring/P_AA.hh"
#include "../src/core/scoring/packing/Ball.hh"
#include "../src/core/scoring/packing/compute_holes_score.hh"
#include "../src/core/scoring/packing/compute_holes_score_res.hh"
#include "../src/core/scoring/packing/HolesEnergy.hh"
#include "../src/core/scoring/packing/HolesEnergyCreator.hh"
#include "../src/core/scoring/packing/HolesEnergyRes.hh"
#include "../src/core/scoring/packing/HolesParams.hh"
#include "../src/core/scoring/packing/HolesParamsRes.hh"
#include "../src/core/scoring/packing/PoseBalls.hh"
#include "../src/core/scoring/packing/PoseBallsLite.hh"
#include "../src/core/scoring/packing/surf_vol.hh"
#include "../src/core/scoring/packing/SurfEnergy.hh"
#include "../src/core/scoring/packing/SurfEnergyCreator.hh"
#include "../src/core/scoring/packing/SurfVolEnergy.hh"
#include "../src/core/scoring/packing/SurfVolEnergyCreator.hh"
#include "../src/core/scoring/packstat/AtomRadiusMap.fwd.hh"
#include "../src/core/scoring/packstat/AtomRadiusMap.hh"
#include "../src/core/scoring/packstat/CavityBall.fwd.hh"
#include "../src/core/scoring/packstat/CavityBall.hh"
#include "../src/core/scoring/packstat/compute_sasa.hh"
#include "../src/core/scoring/packstat/io.hh"
#include "../src/core/scoring/packstat/LeeRichards.hh"
#include "../src/core/scoring/packstat/packing_score_params.hh"
#include "../src/core/scoring/packstat/PackingScore.hh"
#include "../src/core/scoring/packstat/sasa_dot_locations.hh"
#include "../src/core/scoring/packstat/SimplePDB.fwd.hh"
#include "../src/core/scoring/packstat/SimplePDB.hh"
#include "../src/core/scoring/packstat/SimplePDB_Atom.fwd.hh"
#include "../src/core/scoring/packstat/SimplePDB_Atom.hh"
#include "../src/core/scoring/packstat/types.hh"
#include "../src/core/scoring/packstat/util.hh"
#include "../src/core/scoring/PairEPotential.fwd.hh"
#include "../src/core/scoring/PairEPotential.hh"
#include "../src/core/scoring/ProteinTorsion.hh"
#include "../src/core/scoring/Ramachandran.fwd.hh"
#include "../src/core/scoring/Ramachandran.hh"
#include "../src/core/scoring/Ramachandran2B.fwd.hh"
#include "../src/core/scoring/Ramachandran2B.hh"
#include "../src/core/scoring/ResidualDipolarCoupling.fwd.hh"
#include "../src/core/scoring/ResidualDipolarCoupling.hh"
#include "../src/core/scoring/ResidualDipolarCoupling_Rohl.fwd.hh"
#include "../src/core/scoring/ResidualDipolarCoupling_Rohl.hh"
#include "../src/core/scoring/ResidueNeighborList.fwd.hh"
#include "../src/core/scoring/ResidueNeighborList.hh"
#include "../src/core/scoring/rms_util.hh"
#include "../src/core/scoring/rms_util.tmpl.hh"
#include "../src/core/scoring/rna/RG_Energy_RNA.hh"
#include "../src/core/scoring/rna/RG_Energy_RNACreator.hh"
#include "../src/core/scoring/rna/RNA_AtomVDW.fwd.hh"
#include "../src/core/scoring/rna/RNA_AtomVDW.hh"
#include "../src/core/scoring/rna/RNA_BaseBaseEnergy.fwd.hh"
#include "../src/core/scoring/rna/RNA_BaseBaseEnergy.hh"
#include "../src/core/scoring/rna/RNA_BaseDoubletClasses.hh"
#include "../src/core/scoring/rna/RNA_BulgeEnergy.fwd.hh"
#include "../src/core/scoring/rna/RNA_BulgeEnergy.hh"
#include "../src/core/scoring/rna/RNA_BulgeEnergyCreator.hh"
#include "../src/core/scoring/rna/RNA_CentroidInfo.fwd.hh"
#include "../src/core/scoring/rna/RNA_CentroidInfo.hh"
#include "../src/core/scoring/rna/RNA_DataBackboneEnergy.fwd.hh"
#include "../src/core/scoring/rna/RNA_DataBackboneEnergy.hh"
#include "../src/core/scoring/rna/RNA_DataBackboneEnergyCreator.hh"
#include "../src/core/scoring/rna/RNA_DataInfo.fwd.hh"
#include "../src/core/scoring/rna/RNA_DataInfo.hh"
#include "../src/core/scoring/rna/RNA_FA_Stack.hh"
#include "../src/core/scoring/rna/RNA_FilteredBaseBaseInfo.fwd.hh"
#include "../src/core/scoring/rna/RNA_FilteredBaseBaseInfo.hh"
#include "../src/core/scoring/rna/RNA_FullAtomStackingEnergy.fwd.hh"
#include "../src/core/scoring/rna/RNA_FullAtomStackingEnergy.hh"
#include "../src/core/scoring/rna/RNA_FullAtomStackingEnergyCreator.hh"
#include "../src/core/scoring/rna/RNA_LJ_BaseEnergy.fwd.hh"
#include "../src/core/scoring/rna/RNA_LJ_BaseEnergy.hh"
#include "../src/core/scoring/rna/RNA_LJ_BaseEnergyCreator.hh"
#include "../src/core/scoring/rna/RNA_LowResolutionPotential.fwd.hh"
#include "../src/core/scoring/rna/RNA_LowResolutionPotential.hh"
#include "../src/core/scoring/rna/RNA_PairwiseLowResolutionEnergy.fwd.hh"
#include "../src/core/scoring/rna/RNA_PairwiseLowResolutionEnergy.hh"
#include "../src/core/scoring/rna/RNA_PairwiseLowResolutionEnergyCreator.hh"
#include "../src/core/scoring/rna/RNA_RawBaseBaseInfo.fwd.hh"
#include "../src/core/scoring/rna/RNA_RawBaseBaseInfo.hh"
#include "../src/core/scoring/rna/RNA_ScoringInfo.fwd.hh"
#include "../src/core/scoring/rna/RNA_ScoringInfo.hh"
#include "../src/core/scoring/rna/RNA_Torsion.fwd.hh"
#include "../src/core/scoring/rna/RNA_TorsionEnergy.fwd.hh"
#include "../src/core/scoring/rna/RNA_TorsionEnergy.hh"
#include "../src/core/scoring/rna/RNA_TorsionEnergyCreator.hh"
#include "../src/core/scoring/rna/RNA_TorsionPotential.fwd.hh"
#include "../src/core/scoring/rna/RNA_TorsionPotential.hh"
#include "../src/core/chemical/rna/RNA_Util.hh"
#include "../src/core/scoring/rna/RNA_VDW_Energy.fwd.hh"
#include "../src/core/scoring/rna/RNA_VDW_Energy.hh"
#include "../src/core/scoring/rna/RNA_VDW_EnergyCreator.hh"
#include "../src/core/scoring/sasa.hh"
#include "../src/core/scoring/saxs/FormFactor.fwd.hh"
#include "../src/core/scoring/saxs/FormFactor.hh"
#include "../src/core/scoring/saxs/FormFactorManager.fwd.hh"
#include "../src/core/scoring/saxs/FormFactorManager.hh"
#include "../src/core/scoring/saxs/PDDFEnergy.fwd.hh"
#include "../src/core/scoring/saxs/PDDFEnergy.hh"
#include "../src/core/scoring/saxs/PDDFEnergyCreator.hh"
#include "../src/core/scoring/saxs/SAXSEnergy.hh"
#include "../src/core/scoring/saxs/SAXSEnergyCEN.hh"
#include "../src/core/scoring/saxs/SAXSEnergyCreator.hh"
#include "../src/core/scoring/saxs/SAXSEnergyCreatorCEN.hh"
#include "../src/core/scoring/saxs/SAXSEnergyCreatorFA.hh"
#include "../src/core/scoring/saxs/SAXSEnergyFA.hh"
#include "../src/core/scoring/saxs/SinXOverX.hh"
#include "../src/core/scoring/ScoreFunction.fwd.hh"
#include "../src/core/scoring/ScoreFunction.hh"
#include "../src/core/scoring/ScoreFunctionFactory.hh"
#include "../src/core/scoring/ScoreFunctionInfo.fwd.hh"
#include "../src/core/scoring/ScoreFunctionInfo.hh"
#include "../src/core/scoring/ScoreFunctionParameter.hh"
#include "../src/core/scoring/ScoreFunctionVariant.hh"
#include "../src/core/scoring/ScoreType.hh"
#include "../src/core/scoring/ScoreTypeManager.hh"
#include "../src/core/scoring/ScoringManager.fwd.hh"
#include "../src/core/scoring/ScoringManager.hh"
#include "../src/core/scoring/SecondaryStructurePotential.fwd.hh"
#include "../src/core/scoring/SecondaryStructurePotential.hh"
#include "../src/core/scoring/SecondaryStructureWeights.hh"
#include "../src/core/scoring/SS_Info.fwd.hh"
#include "../src/core/scoring/SS_Info.hh"
#include "../src/core/scoring/SS_Killhairpins_Info.fwd.hh"
#include "../src/core/scoring/SS_Killhairpins_Info.hh"
#include "../src/core/scoring/SurfacePotential.hh"
#include "../src/core/scoring/symE/symE.fwd.hh"
#include "../src/core/scoring/symE/symE.hh"
#include "../src/core/scoring/symE/symECreator.hh"
#include "../src/core/scoring/symmetry/NBListCache.fwd.hh"
#include "../src/core/scoring/symmetry/NBListCache.hh"
#include "../src/core/scoring/symmetry/SymmetricEnergies.fwd.hh"
#include "../src/core/scoring/symmetry/SymmetricEnergies.hh"
#include "../src/core/scoring/symmetry/SymmetricScoreFunction.fwd.hh"
#include "../src/core/scoring/symmetry/SymmetricScoreFunction.hh"
#include "../src/core/scoring/TenANeighborGraph.fwd.hh"
#include "../src/core/scoring/TenANeighborGraph.hh"
#include "../src/core/scoring/trie/CPDataCorrespondence.fwd.hh"
#include "../src/core/scoring/trie/CPDataCorrespondence.hh"
#include "../src/core/scoring/trie/RotamerDescriptor.fwd.hh"
#include "../src/core/scoring/trie/RotamerDescriptor.hh"
#include "../src/core/scoring/trie/RotamerTrie.fwd.hh"
#include "../src/core/scoring/trie/RotamerTrie.hh"
#include "../src/core/scoring/trie/RotamerTrieBase.fwd.hh"
#include "../src/core/scoring/trie/RotamerTrieBase.hh"
#include "../src/core/scoring/trie/trie.functions.fwd.hh"
#include "../src/core/scoring/trie/trie.functions.hh"
#include "../src/core/scoring/trie/trie_vs_path.hh"
#include "../src/core/scoring/trie/trie_vs_trie.fwd.hh"
#include "../src/core/scoring/trie/trie_vs_trie.hh"
#include "../src/core/scoring/trie/TrieCollection.fwd.hh"
#include "../src/core/scoring/trie/TrieCollection.hh"
#include "../src/core/scoring/trie/TrieCountPairBase.fwd.hh"
#include "../src/core/scoring/trie/TrieCountPairBase.hh"
#include "../src/core/scoring/TwelveANeighborGraph.fwd.hh"
#include "../src/core/scoring/TwelveANeighborGraph.hh"
#include "../src/core/scoring/types.hh"
#include "../src/core/scoring/UnfoldedStatePotential.fwd.hh"
#include "../src/core/scoring/UnfoldedStatePotential.hh"
#include "../src/core/scoring/WaterAdductHBondPotential.fwd.hh"
#include "../src/core/scoring/WaterAdductHBondPotential.hh"
#include "../src/core/sequence/Aligner.fwd.hh"
#include "../src/core/sequence/Aligner.hh"
#include "../src/core/sequence/AlignerFactory.hh"
#include "../src/core/sequence/CompassScoringScheme.hh"
#include "../src/core/sequence/CompositeScoringScheme.fwd.hh"
#include "../src/core/sequence/CompositeScoringScheme.hh"
#include "../src/core/sequence/DP_Matrix.hh"
#include "../src/core/sequence/DPScoringScheme.hh"
#include "../src/core/sequence/ExtendAlignerSW.hh"
#include "../src/core/sequence/L1ScoringScheme.hh"
#include "../src/core/sequence/MatrixScoringScheme.hh"
#include "../src/core/sequence/MCAligner.hh"
#include "../src/core/sequence/NWAligner.fwd.hh"
#include "../src/core/sequence/NWAligner.hh"
#include "../src/core/sequence/PairScoringScheme.fwd.hh"
#include "../src/core/sequence/PairScoringScheme.hh"
#include "../src/core/sequence/ProfSimScoringScheme.hh"
#include "../src/core/sequence/ScoringScheme.fwd.hh"
#include "../src/core/sequence/ScoringScheme.hh"
#include "../src/core/sequence/ScoringSchemeFactory.hh"
#include "../src/core/sequence/Sequence.fwd.hh"
#include "../src/core/sequence/Sequence.hh"
#include "../src/core/sequence/SequenceAlignment.fwd.hh"
#include "../src/core/sequence/SequenceAlignment.hh"
#include "../src/core/id/SequenceMapping.fwd.hh"
#include "../src/core/id/SequenceMapping.hh"
#include "../src/core/sequence/SequenceProfile.fwd.hh"
#include "../src/core/sequence/SequenceProfile.hh"
#include "../src/core/sequence/SimpleScoringScheme.hh"
#include "../src/core/sequence/SWAligner.fwd.hh"
#include "../src/core/sequence/SWAligner.hh"
#include "../src/core/sequence/util.hh"
#include "../src/core/svn_version.hh"
#include "../src/core/types.hh"
#include "../src/core/util/basic.hh"
#include "../src/core/util/ComparingTracer.hh"
#include "../src/core/util/datacache/BasicDataCache.fwd.hh"
#include "../src/core/util/datacache/BasicDataCache.hh"
#include "../src/core/util/datacache/cacheable_observers.fwd.hh"
#include "../src/core/util/datacache/cacheable_observers.hh"
#include "../src/core/util/datacache/CacheableAtomID_MapVector.fwd.hh"
#include "../src/core/util/datacache/CacheableAtomID_MapVector.hh"
#include "../src/core/util/datacache/CacheableData.fwd.hh"
#include "../src/core/util/datacache/CacheableData.hh"
#include "../src/core/util/datacache/CacheablePoseRawPtr.fwd.hh"
#include "../src/core/util/datacache/CacheablePoseRawPtr.hh"
#include "../src/core/util/datacache/CacheableSequenceProfile.fwd.hh"
#include "../src/core/util/datacache/CacheableSequenceProfile.hh"
#include "../src/core/util/datacache/CacheableString.fwd.hh"
#include "../src/core/util/datacache/CacheableString.hh"
#include "../src/core/util/datacache/CacheableStringFloatMap.fwd.hh"
#include "../src/core/util/datacache/CacheableStringFloatMap.hh"
#include "../src/core/util/datacache/CacheableStringMap.fwd.hh"
#include "../src/core/util/datacache/CacheableStringMap.hh"
#include "../src/core/util/datacache/DataCache.fwd.hh"
#include "../src/core/util/datacache/DataCache.hh"
#include "../src/core/util/datacache/DiagnosticData.fwd.hh"
#include "../src/core/util/datacache/DiagnosticData.hh"
#include "../src/core/util/Emitter.hh"
#include "../src/core/util/interpolate.hh"
#include "../src/core/util/MetricValue.fwd.hh"
#include "../src/core/util/MetricValue.hh"
#include "../src/core/util/MetricValueIO.hh"
#include "../src/core/util/OStream.fwd.hh"
#include "../src/core/util/OStream.hh"
#include "../src/core/util/prof.hh"
#include "../src/core/util/Tracer.fwd.hh"
#include "../src/core/util/Tracer.hh"
#include "../src/core/util/TracerToFile.hh"
#include "../src/devel/AnchoredDesign/AnchorClass.fwd.hh"
#include "../src/devel/AnchoredDesign/AnchorClass.hh"
#include "../src/devel/AnchoredDesign/AnchorMovers.fwd.hh"
#include "../src/devel/AnchoredDesign/AnchorMovers.hh"
#include "../src/devel/AnchoredDesign/InterfaceAnalyzerMover.fwd.hh"
#include "../src/devel/AnchoredDesign/InterfaceAnalyzerMover.hh"
#include "../src/devel/AnchoredDesign/LoopAnalyzerMover.fwd.hh"
#include "../src/devel/AnchoredDesign/LoopAnalyzerMover.hh"
#include "../src/devel/cartesian_frags/CartesianFragment.fwd.hh"
#include "../src/devel/cartesian_frags/CartesianFragment.hh"
#include "../src/devel/cartesian_frags/Direction.hh"
#include "../src/devel/cartesian_frags/DNA_FragLib.fwd.hh"
#include "../src/devel/cartesian_frags/DNA_FragLib.hh"
#include "../src/devel/cartesian_frags/dna_util.hh"
#include "../src/devel/cartesian_frags/SafeID.fwd.hh"
#include "../src/devel/cartesian_frags/SafeID.hh"
#include "../src/devel/cycpep/CycPepMover.hh"
#include "../src/devel/DenovoProteinDesign/CreateStartingStructureMover.fwd.hh"
#include "../src/devel/DenovoProteinDesign/CreateStartingStructureMover.hh"
#include "../src/devel/DenovoProteinDesign/DesignRelaxMover.fwd.hh"
#include "../src/devel/DenovoProteinDesign/DesignRelaxMover.hh"
#include "../src/devel/DenovoProteinDesign/FragmentSequenceMover.fwd.hh"
#include "../src/devel/DenovoProteinDesign/FragmentSequenceMover.hh"
#include "../src/devel/DenovoProteinDesign/SequenceFitnessMover.fwd.hh"
#include "../src/devel/DenovoProteinDesign/SequenceFitnessMover.hh"
#include "../src/devel/DenovoProteinDesign/SSClass.fwd.hh"
#include "../src/devel/DenovoProteinDesign/SSClass.hh"
#include "../src/devel/DenovoProteinDesign/util.hh"
#include "../src/devel/dna/base_movers.hh"
#include "../src/devel/dna/ProteinDNA_Relax.hh"
#include "../src/devel/dna/protocols.hh"
#include "../src/devel/dna/relax_util.hh"
#include "../src/devel/dna/typedefs.hh"
#include "../src/devel/dna/util.hh"
#include "../src/devel/domain_assembly/domain_assembly.hh"
#include "../src/devel/domain_assembly/domain_assembly_setup.hh"
#include "../src/devel/domain_assembly/DomainAssemblyReader.hh"
#include "../src/devel/enzdes/DesignSilentStruct.hh"
#include "../src/devel/enzdes/EnzdesRemodelProtocol.hh"
#include "../src/devel/fold_from_loops/FoldFromLoops_functions.hh"
#include "../src/devel/fold_from_loops/FoldFromLoopsMover.fwd.hh"
#include "../src/devel/fold_from_loops/FoldFromLoopsMover.hh"
#include "../src/devel/init.hh"
#include "../src/devel/IntegratedLoop/CcdCloseMover.hh"
#include "../src/devel/IntegratedLoop/LoopManager.hh"
#include "../src/devel/IntegratedLoop/LoopModeler.hh"
#include "../src/devel/IntegratedLoop/Loops.fwd.hh"
#include "../src/devel/InvKinLigLoopDesign/Cloner.hh"
#include "../src/devel/InvKinLigLoopDesign/Fragment.hh"
#include "../src/devel/InvKinLigLoopDesign/Ints.hh"
#include "../src/devel/InvKinLigLoopDesign/JumpManager.hh"
#include "../src/devel/InvKinLigLoopDesign/Loop.hh"
#include "../src/devel/InvKinLigLoopDesign/Mover.hh"
#include "../src/devel/InvKinLigLoopDesign/Protocol.hh"
#include "../src/devel/InvKinLigLoopDesign/ResID.hh"
#include "../src/devel/InvKinLigLoopDesign/std_extra.hh"
#include "../src/devel/LoopExtend/LoopExtendMover.fwd.hh"
#include "../src/devel/LoopExtend/LoopExtendMover.hh"
#include "../src/devel/LoopGrids/LoopGrid.fwd.hh"
#include "../src/devel/LoopGrids/LoopGrid.hh"
#include "../src/devel/MakeRotLib/MakeRotLib.hh"
#include "../src/devel/MakeRotLib/RotData.hh"
#include "../src/devel/MetalInterface/DualMonteCarlo.fwd.hh"
#include "../src/devel/MetalInterface/DualMonteCarlo.hh"
#include "../src/devel/MetalInterface/MetalInterfaceDesignMover.fwd.hh"
#include "../src/devel/MetalInterface/MetalInterfaceDesignMover.hh"
#include "../src/devel/optest/A.fwd.hh"
#include "../src/devel/optest/A.hh"
#include "../src/devel/optest/B1.fwd.hh"
#include "../src/devel/optest/B1.hh"
#include "../src/devel/optest/B2.fwd.hh"
#include "../src/devel/optest/B2.hh"
#include "../src/devel/optest/C1.hh"
#include "../src/devel/optest/C2.hh"
#include "../src/devel/pack_daemon/DynamicAggregateFunction.fwd.hh"
#include "../src/devel/pack_daemon/DynamicAggregateFunction.hh"
#include "../src/devel/pack_daemon/EntityCorrespondence.fwd.hh"
#include "../src/devel/pack_daemon/EntityCorrespondence.hh"
#include "../src/devel/pack_daemon/MultistateAggregateFunction.fwd.hh"
#include "../src/devel/pack_daemon/MultistateAggregateFunction.hh"
#include "../src/devel/pack_daemon/MultistateFitnessFunction.fwd.hh"
#include "../src/devel/pack_daemon/MultistateFitnessFunction.hh"
#include "../src/devel/pack_daemon/PackDaemon.fwd.hh"
#include "../src/devel/pack_daemon/PackDaemon.hh"
#include "../src/devel/PathRover/pathrover.hh"
#include "../src/devel/PathRover/pathrover_algorithms.hh"
#include "../src/devel/PathRover/pathrover_DOFs_manager.hh"
#include "../src/devel/PathRover/pathrover_parameters.hh"
#include "../src/devel/PathRover/pathrover_partial_data_manager.hh"
#include "../src/devel/PathRover/pathrover_planners.hh"
#include "../src/devel/PathRover/pathrover_RRT_conformation_DAG.hh"
#include "../src/devel/ResidualDipolarCoupling/RDC_energies.hh"
#include "../src/devel/ResidualDipolarCoupling/RDC_main.hh"
#include "../src/devel/simple_options/option.hh"
#include "../src/devel/simple_options/test.hh"
#include "../src/devel/simple_options/working/option.hh"
#include "../src/devel/simple_options/working/test.hh"
#include "../src/devel/SSrbrelax/SSRbClass.hh"
#include "../src/devel/SSrbrelax/SSrbrelax.hh"
#include "../src/devel/UnfoldedStateEnergyCalculator/UnfoldedStateEnergyCalculatorJobDistributor.fwd.hh"
#include "../src/devel/UnfoldedStateEnergyCalculator/UnfoldedStateEnergyCalculatorJobDistributor.hh"
#include "../src/devel/UnfoldedStateEnergyCalculator/UnfoldedStateEnergyCalculatorMover.fwd.hh"
#include "../src/devel/UnfoldedStateEnergyCalculator/UnfoldedStateEnergyCalculatorMover.hh"
#include "../src/devel/UnfoldedStateEnergyCalculator/UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor.fwd.hh"
#include "../src/devel/UnfoldedStateEnergyCalculator/UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor.hh"
#include "../src/devel/UnfoldedStateEnergyCalculator/UnfoldedStateEnergyCalculatorUtil.hh"
#include "../src/integration/make_Protein.hh"
#include "../src/numeric/agglomerative_hierarchical_clustering.hh"
#include "../src/numeric/all.fwd.hh"
#include "../src/numeric/all.hh"
#include "../src/numeric/angle.functions.hh"
#include "../src/numeric/BodyPosition.fwd.hh"
#include "../src/numeric/BodyPosition.hh"
#include "../src/numeric/BodyPosition.io.hh"
#include "../src/numeric/ClusteringTreeNode.fwd.hh"
#include "../src/numeric/ClusteringTreeNode.hh"
#include "../src/numeric/constants.hh"
#include "../src/numeric/conversions.hh"
#include "../src/numeric/deriv/angle_deriv.hh"
#include "../src/numeric/deriv/dihedral_deriv.hh"
#include "../src/numeric/deriv/distance_deriv.hh"
#include "../src/numeric/fourier/FFT.hh"
#include "../src/numeric/fourier/kiss_fft.hh"
#include "../src/numeric/fourier/kiss_fft_state.hh"
#include "../src/numeric/geometry/BoundingBox.fwd.hh"
#include "../src/numeric/geometry/BoundingBox.hh"
#include "../src/numeric/gmx_functions.hh"
#include "../src/numeric/HomogeneousTransform.fwd.hh"
#include "../src/numeric/HomogeneousTransform.hh"
#include "../src/numeric/internal/ColPointers.hh"
#include "../src/numeric/internal/ColsPointer.hh"
#include "../src/numeric/internal/ColVectors.hh"
#include "../src/numeric/internal/RowPointers.hh"
#include "../src/numeric/internal/RowsPointer.hh"
#include "../src/numeric/internal/RowVectors.hh"
#include "../src/numeric/interpolation/all.hh"
#include "../src/numeric/interpolation/full/interpolation.hh"
#include "../src/numeric/interpolation/Histogram.fwd.hh"
#include "../src/numeric/interpolation/Histogram.hh"
#include "../src/numeric/interpolation/interpolation.hh"
#include "../src/numeric/interpolation/periodic_range/full/interpolation.hh"
#include "../src/numeric/interpolation/periodic_range/half/interpolation.hh"
#include "../src/numeric/interpolation/periodic_range/periodic_value/full/interpolation.hh"
#include "../src/numeric/interpolation/periodic_range/periodic_value/half/interpolation.hh"
#include "../src/numeric/interpolation/spline/Bicubic_spline.fwd.hh"
#include "../src/numeric/interpolation/spline/Bicubic_spline.hh"
#include "../src/numeric/interpolation/spline/CompoundInterpolator.hh"
#include "../src/numeric/interpolation/spline/Cubic_spline.fwd.hh"
#include "../src/numeric/interpolation/spline/Cubic_spline.hh"
#include "../src/numeric/interpolation/spline/Interpolator.hh"
#include "../src/numeric/interpolation/spline/SimpleInterpolator.hh"
#include "../src/numeric/interpolation/spline/spline_functions.hh"
#include "../src/numeric/interpolation/spline/SplineGenerator.hh"
#include "../src/numeric/IntervalSet.fwd.hh"
#include "../src/numeric/IntervalSet.hh"
#include "../src/numeric/io.hh"
#include "../src/numeric/IOTraits.hh"
#include "../src/numeric/kdtree/calc_distance.hh"
#include "../src/numeric/kdtree/constants.hh"
#include "../src/numeric/kdtree/construct_kdtree.hh"
#include "../src/numeric/kdtree/HyperRectangle.fwd.hh"
#include "../src/numeric/kdtree/HyperRectangle.hh"
#include "../src/numeric/kdtree/KDNode.fwd.hh"
#include "../src/numeric/kdtree/KDNode.hh"
#include "../src/numeric/kdtree/KDPoint.fwd.hh"
#include "../src/numeric/kdtree/KDPoint.hh"
#include "../src/numeric/kdtree/KDPointList.hh"
#include "../src/numeric/kdtree/KDTree.fwd.hh"
#include "../src/numeric/kdtree/KDTree.hh"
#include "../src/numeric/kdtree/nearest_neighbors.hh"
#include "../src/numeric/kdtree/util.hh"
#include "../src/numeric/kdtree/WrappedChar.hh"
#include "../src/numeric/kdtree/WrappedPrimitive.hh"
#include "../src/numeric/kdtree/WrappedReal.hh"
#include "../src/numeric/kdtree/WrappedType.hh"
#include "../src/numeric/MathMatrix.hh"
#include "../src/numeric/MathMatrix_operations.hh"
#include "../src/numeric/MathVector.hh"
#include "../src/numeric/MathVector_operations.hh"
#include "../src/numeric/model_quality/maxsub.hh"
#include "../src/numeric/model_quality/rms.hh"
#include "../src/numeric/model_quality/RmsData.hh"
#include "../src/numeric/model_quality/util.hh"
#include "../src/numeric/MultiDimensionalHistogram.fwd.hh"
#include "../src/numeric/MultiDimensionalHistogram.hh"
#include "../src/numeric/numeric.functions.hh"
#include "../src/numeric/NumericTraits.hh"
#include "../src/numeric/Quaternion.fwd.hh"
#include "../src/numeric/Quaternion.hh"
#include "../src/numeric/Quaternion.io.hh"
#include "../src/numeric/random/mt19937.hh"
#include "../src/numeric/random/random.fwd.hh"
#include "../src/numeric/random/random.hh"
#include "../src/numeric/random/random_permutation.hh"
#include "../src/numeric/random/reservoir_sample.hh"
#include "../src/numeric/random/uniform.hh"
#include "../src/numeric/random/WeightedSampler.fwd.hh"
#include "../src/numeric/random/WeightedSampler.hh"
#include "../src/numeric/statistics.functions.hh"
#include "../src/numeric/SVD/SVD_Solver.fwd.hh"
#include "../src/numeric/SVD/SVD_Solver.hh"
#include "../src/numeric/trig.functions.hh"
#include "../src/numeric/types.hh"
#include "../src/numeric/util.hh"
#include "../src/numeric/xyz.functions.fwd.hh"
#include "../src/numeric/xyz.functions.hh"
#include "../src/numeric/xyz.io.hh"
#include "../src/numeric/xyzMatrix.fwd.hh"
#include "../src/numeric/xyzMatrix.hh"
#include "../src/numeric/xyzMatrix.io.hh"
#include "../src/numeric/xyzTriple.fwd.hh"
#include "../src/numeric/xyzTriple.hh"
#include "../src/numeric/xyzTriple.io.hh"
#include "../src/numeric/xyzVector.fwd.hh"
#include "../src/numeric/xyzVector.hh"
#include "../src/numeric/xyzVector.io.hh"
#include "../src/ObjexxFCL/array.iterator.hh"
#include "../src/ObjexxFCL/byte.fwd.hh"
#include "../src/ObjexxFCL/byte.hh"
#include "../src/ObjexxFCL/CArray.fwd.hh"
#include "../src/ObjexxFCL/CArray.hh"
#include "../src/ObjexxFCL/CArray.io.hh"
#include "../src/ObjexxFCL/CArrayP.fwd.hh"
#include "../src/ObjexxFCL/CArrayP.hh"
#include "../src/ObjexxFCL/CArrayP.io.hh"
#include "../src/ObjexxFCL/char.functions.hh"
#include "../src/ObjexxFCL/Chunk.hh"
#include "../src/ObjexxFCL/ChunkExponent.hh"
#include "../src/ObjexxFCL/ChunkVector.fwd.hh"
#include "../src/ObjexxFCL/ChunkVector.hh"
#include "../src/ObjexxFCL/ChunkVector.io.hh"
#include "../src/ObjexxFCL/Cstring.fwd.hh"
#include "../src/ObjexxFCL/Cstring.hh"
#include "../src/ObjexxFCL/Dimension.fwd.hh"
#include "../src/ObjexxFCL/Dimension.hh"
#include "../src/ObjexxFCL/DimensionExpression.hh"
#include "../src/ObjexxFCL/DimensionExpressionCon.hh"
#include "../src/ObjexxFCL/DimensionExpressionCube.hh"
#include "../src/ObjexxFCL/DimensionExpressionDiv.hh"
#include "../src/ObjexxFCL/DimensionExpressionMax.hh"
#include "../src/ObjexxFCL/DimensionExpressionMin.hh"
#include "../src/ObjexxFCL/DimensionExpressionMul.hh"
#include "../src/ObjexxFCL/DimensionExpressionPow.hh"
#include "../src/ObjexxFCL/DimensionExpressionRef.hh"
#include "../src/ObjexxFCL/DimensionExpressions.hh"
#include "../src/ObjexxFCL/DimensionExpressionSquare.hh"
#include "../src/ObjexxFCL/DimensionExpressionSub.hh"
#include "../src/ObjexxFCL/DimensionExpressionSum.hh"
#include "../src/ObjexxFCL/DynamicIndexRange.fwd.hh"
#include "../src/ObjexxFCL/DynamicIndexRange.hh"
#include "../src/ObjexxFCL/FArray.all.fwd.hh"
#include "../src/ObjexxFCL/FArray.all.hh"
#include "../src/ObjexxFCL/FArray.fwd.hh"
#include "../src/ObjexxFCL/FArray.hh"
#include "../src/ObjexxFCL/FArray.io.hh"
#include "../src/ObjexxFCL/FArray1.all.fwd.hh"
#include "../src/ObjexxFCL/FArray1.all.hh"
#include "../src/ObjexxFCL/FArray1.fwd.hh"
#include "../src/ObjexxFCL/FArray1.hh"
#include "../src/ObjexxFCL/FArray1.io.hh"
#include "../src/ObjexxFCL/FArray1A.fwd.hh"
#include "../src/ObjexxFCL/FArray1A.hh"
#include "../src/ObjexxFCL/FArray1D.fwd.hh"
#include "../src/ObjexxFCL/FArray1D.hh"
#include "../src/ObjexxFCL/FArray1P.fwd.hh"
#include "../src/ObjexxFCL/FArray1P.hh"
#include "../src/ObjexxFCL/FArray2.all.fwd.hh"
#include "../src/ObjexxFCL/FArray2.all.hh"
#include "../src/ObjexxFCL/FArray2.fwd.hh"
#include "../src/ObjexxFCL/FArray2.hh"
#include "../src/ObjexxFCL/FArray2.io.hh"
#include "../src/ObjexxFCL/FArray2A.fwd.hh"
#include "../src/ObjexxFCL/FArray2A.hh"
#include "../src/ObjexxFCL/FArray2D.fwd.hh"
#include "../src/ObjexxFCL/FArray2D.hh"
#include "../src/ObjexxFCL/FArray2P.fwd.hh"
#include "../src/ObjexxFCL/FArray2P.hh"
#include "../src/ObjexxFCL/FArray3.all.fwd.hh"
#include "../src/ObjexxFCL/FArray3.all.hh"
#include "../src/ObjexxFCL/FArray3.fwd.hh"
#include "../src/ObjexxFCL/FArray3.hh"
#include "../src/ObjexxFCL/FArray3.io.hh"
#include "../src/ObjexxFCL/FArray3A.fwd.hh"
#include "../src/ObjexxFCL/FArray3A.hh"
#include "../src/ObjexxFCL/FArray3D.fwd.hh"
#include "../src/ObjexxFCL/FArray3D.hh"
#include "../src/ObjexxFCL/FArray3P.fwd.hh"
#include "../src/ObjexxFCL/FArray3P.hh"
#include "../src/ObjexxFCL/FArray4.all.fwd.hh"
#include "../src/ObjexxFCL/FArray4.all.hh"
#include "../src/ObjexxFCL/FArray4.fwd.hh"
#include "../src/ObjexxFCL/FArray4.hh"
#include "../src/ObjexxFCL/FArray4.io.hh"
#include "../src/ObjexxFCL/FArray4A.fwd.hh"
#include "../src/ObjexxFCL/FArray4A.hh"
#include "../src/ObjexxFCL/FArray4D.fwd.hh"
#include "../src/ObjexxFCL/FArray4D.hh"
#include "../src/ObjexxFCL/FArray4P.fwd.hh"
#include "../src/ObjexxFCL/FArray4P.hh"
#include "../src/ObjexxFCL/FArray5.all.fwd.hh"
#include "../src/ObjexxFCL/FArray5.all.hh"
#include "../src/ObjexxFCL/FArray5.fwd.hh"
#include "../src/ObjexxFCL/FArray5.hh"
#include "../src/ObjexxFCL/FArray5.io.hh"
#include "../src/ObjexxFCL/FArray5A.fwd.hh"
#include "../src/ObjexxFCL/FArray5A.hh"
#include "../src/ObjexxFCL/FArray5D.fwd.hh"
#include "../src/ObjexxFCL/FArray5D.hh"
#include "../src/ObjexxFCL/FArray5P.fwd.hh"
#include "../src/ObjexxFCL/FArray5P.hh"
#include "../src/ObjexxFCL/FArray6.all.fwd.hh"
#include "../src/ObjexxFCL/FArray6.all.hh"
#include "../src/ObjexxFCL/FArray6.fwd.hh"
#include "../src/ObjexxFCL/FArray6.hh"
#include "../src/ObjexxFCL/FArray6.io.hh"
#include "../src/ObjexxFCL/FArray6A.fwd.hh"
#include "../src/ObjexxFCL/FArray6A.hh"
#include "../src/ObjexxFCL/FArray6D.fwd.hh"
#include "../src/ObjexxFCL/FArray6D.hh"
#include "../src/ObjexxFCL/FArray6P.fwd.hh"
#include "../src/ObjexxFCL/FArray6P.hh"
#include "../src/ObjexxFCL/FArrayInitializer.fwd.hh"
#include "../src/ObjexxFCL/FArrayInitializer.hh"
#include "../src/ObjexxFCL/FArraySection.fwd.hh"
#include "../src/ObjexxFCL/FArraySection.hh"
#include "../src/ObjexxFCL/FArrayTraits.fwd.hh"
#include "../src/ObjexxFCL/FArrayTraits.hh"
#include "../src/ObjexxFCL/floops.hh"
#include "../src/ObjexxFCL/Fmath.hh"
#include "../src/ObjexxFCL/format.hh"
#include "../src/ObjexxFCL/Fstring.fwd.hh"
#include "../src/ObjexxFCL/Fstring.hh"
#include "../src/ObjexxFCL/IndexRange.fwd.hh"
#include "../src/ObjexxFCL/IndexRange.hh"
#include "../src/ObjexxFCL/InitializerSentinel.hh"
#include "../src/ObjexxFCL/KeyFArray1D.fwd.hh"
#include "../src/ObjexxFCL/KeyFArray1D.hh"
#include "../src/ObjexxFCL/KeyFArray2D.fwd.hh"
#include "../src/ObjexxFCL/KeyFArray2D.hh"
#include "../src/ObjexxFCL/KeyFArray3D.fwd.hh"
#include "../src/ObjexxFCL/KeyFArray3D.hh"
#include "../src/ObjexxFCL/KeyFArray4D.fwd.hh"
#include "../src/ObjexxFCL/KeyFArray4D.hh"
#include "../src/ObjexxFCL/KeyFArray5D.fwd.hh"
#include "../src/ObjexxFCL/KeyFArray5D.hh"
#include "../src/ObjexxFCL/KeyFArray6D.fwd.hh"
#include "../src/ObjexxFCL/KeyFArray6D.hh"
#include "../src/ObjexxFCL/ObjexxFCL.fwd.hh"
#include "../src/ObjexxFCL/ObjexxFCL.hh"
#include "../src/ObjexxFCL/ObjexxFCL.Project.hh"
#include "../src/ObjexxFCL/Observer.fwd.hh"
#include "../src/ObjexxFCL/Observer.hh"
#include "../src/ObjexxFCL/ObserverGraph.hh"
#include "../src/ObjexxFCL/ObserverMediator.hh"
#include "../src/ObjexxFCL/ObserverMulti.hh"
#include "../src/ObjexxFCL/ObserverSingle.hh"
#include "../src/ObjexxFCL/proxy_const_assert.hh"
#include "../src/ObjexxFCL/ProxySentinel.hh"
#include "../src/ObjexxFCL/rvalue_cast.hh"
#include "../src/ObjexxFCL/sbyte.fwd.hh"
#include "../src/ObjexxFCL/sbyte.hh"
#include "../src/ObjexxFCL/SetWrapper.fwd.hh"
#include "../src/ObjexxFCL/SetWrapper.hh"
#include "../src/ObjexxFCL/Star.fwd.hh"
#include "../src/ObjexxFCL/Star.hh"
#include "../src/ObjexxFCL/StaticIndexRange.fwd.hh"
#include "../src/ObjexxFCL/StaticIndexRange.hh"
#include "../src/ObjexxFCL/string.functions.hh"
#include "../src/ObjexxFCL/Time_Date.hh"
#include "../src/ObjexxFCL/TypeTraits.hh"
#include "../src/ObjexxFCL/ubyte.fwd.hh"
#include "../src/ObjexxFCL/ubyte.hh"
#include "../src/platform/cygwin/platform/types.hh"
#include "../src/platform/linux/platform/types.hh"
#include "../src/platform/macos/platform/types.hh"
#include "../src/platform/windows/32/gcc/platform/types.hh"
#include "../src/platform/windows/32/icc/platform/types.hh"
#include "../src/platform/windows/32/msvc/platform/types.hh"
#include "../src/platform/windows/32/platform/types.hh"
#include "../src/platform/windows/64/gcc/platform/types.hh"
#include "../src/platform/windows/64/icc/platform/types.hh"
#include "../src/platform/windows/64/msvc/platform/types.hh"
#include "../src/platform/windows/64/platform/types.hh"
#include "../src/protocols/abinitio/AbrelaxApplication.hh"
#include "../src/protocols/abinitio/AbrelaxMover.fwd.hh"
#include "../src/protocols/abinitio/AbrelaxMover.hh"
#include "../src/protocols/abinitio/AllResiduesChanged.hh"
#include "../src/protocols/abinitio/BrokerMain.hh"
#include "../src/protocols/abinitio/ClassicAbinitio.fwd.hh"
#include "../src/protocols/abinitio/ClassicAbinitio.hh"
#include "../src/protocols/abinitio/ConstraintFragmentMover.hh"
#include "../src/protocols/abinitio/ConstraintFragmentSampler.hh"
#include "../src/protocols/abinitio/DoubleLayerKinematicAbinitio.fwd.hh"
#include "../src/protocols/abinitio/DoubleLayerKinematicAbinitio.hh"
#include "../src/protocols/abinitio/FoldConstraints.fwd.hh"
#include "../src/protocols/abinitio/FoldConstraints.hh"
#include "../src/protocols/abinitio/FragmentCost.hh"
#include "../src/protocols/abinitio/FragmentMover.fwd.hh"
#include "../src/protocols/abinitio/FragmentMover.hh"
#include "../src/protocols/abinitio/FragmentSampler.fwd.hh"
#include "../src/protocols/abinitio/FragmentSampler.hh"
#include "../src/protocols/abinitio/GunnCost.hh"
#include "../src/protocols/abinitio/IterativeAbrelax.hh"
#include "../src/protocols/abinitio/IterativeBase.hh"
#include "../src/protocols/abinitio/IterativeCentroid.hh"
#include "../src/protocols/abinitio/IterativeFullatom.hh"
#include "../src/protocols/abinitio/JumpingFoldConstraints.hh"
#include "../src/protocols/abinitio/KinematicAbinitio.fwd.hh"
#include "../src/protocols/abinitio/KinematicAbinitio.hh"
#include "../src/protocols/abinitio/KinematicControl.fwd.hh"
#include "../src/protocols/abinitio/KinematicControl.hh"
#include "../src/protocols/abinitio/KinematicTaskControl.fwd.hh"
#include "../src/protocols/abinitio/KinematicTaskControl.hh"
#include "../src/protocols/abinitio/LoopJumpFoldCst.fwd.hh"
#include "../src/protocols/abinitio/LoopJumpFoldCst.hh"
#include "../src/protocols/abinitio/MaxSeqSepConstraintSet.fwd.hh"
#include "../src/protocols/abinitio/MaxSeqSepConstraintSet.hh"
#include "../src/protocols/abinitio/MembraneAbinitio.fwd.hh"
#include "../src/protocols/abinitio/MembraneAbinitio.hh"
#include "../src/protocols/abinitio/PairingStatistics.fwd.hh"
#include "../src/protocols/abinitio/PairingStatistics.hh"
#include "../src/protocols/abinitio/ResolutionSwitcher.fwd.hh"
#include "../src/protocols/abinitio/ResolutionSwitcher.hh"
#include "../src/protocols/abinitio/SmoothFragmentMover.fwd.hh"
#include "../src/protocols/abinitio/SmoothFragmentMover.hh"
#include "../src/protocols/abinitio/StrandConstraints.hh"
#include "../src/protocols/abinitio/SymmetricFragmentMover.fwd.hh"
#include "../src/protocols/abinitio/SymmetricFragmentMover.hh"
#include "../src/protocols/abinitio/Template.fwd.hh"
#include "../src/protocols/abinitio/Template.hh"
#include "../src/protocols/abinitio/TemplateJumpSetup.fwd.hh"
#include "../src/protocols/abinitio/TemplateJumpSetup.hh"
#include "../src/protocols/abinitio/Templates.fwd.hh"
#include "../src/protocols/abinitio/Templates.hh"
#include "../src/protocols/abinitio/vs_test.hh"
#include "../src/protocols/antibody/AntibodyClass.fwd.hh"
#include "../src/protocols/antibody/AntibodyClass.hh"
#include "../src/protocols/antibody/AntibodyModeler.fwd.hh"
#include "../src/protocols/antibody/AntibodyModeler.hh"
#include "../src/protocols/antibody/Ubiquitin_E2C_Modeler.fwd.hh"
#include "../src/protocols/antibody/Ubiquitin_E2C_Modeler.hh"
#include "../src/protocols/boinc/boinc.hh"
#include "../src/protocols/boinc/boinc_shmem.hh"
#include "../src/protocols/boinc/BoincPoseObserver.fwd.hh"
#include "../src/protocols/boinc/BoincPoseObserver.hh"
#include "../src/protocols/boinc/watchdog.hh"
#include "../src/protocols/branch_angle/BranchAngleOptimizer.fwd.hh"
#include "../src/protocols/branch_angle/BranchAngleOptimizer.hh"
#include "../src/protocols/branch_angle/BranchCoef1.fwd.hh"
#include "../src/protocols/branch_angle/BranchCoef1.hh"
#include "../src/protocols/branch_angle/BranchCoef2.fwd.hh"
#include "../src/protocols/branch_angle/BranchCoef2.hh"
#include "../src/protocols/branch_angle/BranchParam1.fwd.hh"
#include "../src/protocols/branch_angle/BranchParam1.hh"
#include "../src/protocols/branch_angle/BranchParam2.fwd.hh"
#include "../src/protocols/branch_angle/BranchParam2.hh"
#include "../src/protocols/checkpoint/Checkpoint.fwd.hh"
#include "../src/protocols/checkpoint/Checkpoint.hh"
#include "../src/protocols/checkpoint/CheckPointer.fwd.hh"
#include "../src/protocols/checkpoint/CheckPointer.hh"
#include "../src/protocols/cluster/APCluster.fwd.hh"
#include "../src/protocols/cluster/APCluster.hh"
#include "../src/protocols/cluster/cluster.hh"
#include "../src/protocols/comparative_modeling/AlignmentID.hh"
#include "../src/protocols/comparative_modeling/AlignmentSet.fwd.hh"
#include "../src/protocols/comparative_modeling/AlignmentSet.hh"
#include "../src/protocols/comparative_modeling/AlignmentStream.fwd.hh"
#include "../src/protocols/comparative_modeling/AlignmentStream.hh"
#include "../src/protocols/comparative_modeling/cm_main.hh"
#include "../src/protocols/comparative_modeling/CMPoseInputStream.hh"
#include "../src/protocols/comparative_modeling/ConstraintRemodelMover.hh"
#include "../src/protocols/comparative_modeling/coord_util.hh"
#include "../src/protocols/comparative_modeling/DynamicAlignmentStream.hh"
#include "../src/protocols/comparative_modeling/features/ResidueFeature.fwd.hh"
#include "../src/protocols/comparative_modeling/features/ResidueFeature.hh"
#include "../src/protocols/comparative_modeling/features/ResidueFeatureFactory.hh"
#include "../src/protocols/comparative_modeling/features/SSFeature.fwd.hh"
#include "../src/protocols/comparative_modeling/features/SSFeature.hh"
#include "../src/protocols/comparative_modeling/features/TorsionFeature.fwd.hh"
#include "../src/protocols/comparative_modeling/features/TorsionFeature.hh"
#include "../src/protocols/comparative_modeling/frag_refine.hh"
#include "../src/protocols/comparative_modeling/IgnoreSubsetConstraintSet.fwd.hh"
#include "../src/protocols/comparative_modeling/IgnoreSubsetConstraintSet.hh"
#include "../src/protocols/comparative_modeling/MultiThreadingMover.hh"
#include "../src/protocols/comparative_modeling/PartialThreadingMover.hh"
#include "../src/protocols/comparative_modeling/RecoverSideChainsMover.fwd.hh"
#include "../src/protocols/comparative_modeling/RecoverSideChainsMover.hh"
#include "../src/protocols/comparative_modeling/StaticAlignmentStream.hh"
#include "../src/protocols/comparative_modeling/StealLigandMover.fwd.hh"
#include "../src/protocols/comparative_modeling/StealLigandMover.hh"
#include "../src/protocols/comparative_modeling/StealSideChainsMover.fwd.hh"
#include "../src/protocols/comparative_modeling/StealSideChainsMover.hh"
#include "../src/protocols/comparative_modeling/ThreadingMover.hh"
#include "../src/protocols/comparative_modeling/util.hh"
#include "../src/protocols/constraints_additional/AmbiguousMultiConstraint.fwd.hh"
#include "../src/protocols/constraints_additional/AmbiguousMultiConstraint.hh"
#include "../src/protocols/constraints_additional/SequenceProfileConstraint.fwd.hh"
#include "../src/protocols/constraints_additional/SequenceProfileConstraint.hh"
#include "../src/protocols/ddg/ddG_main.hh"
#include "../src/protocols/ddg/ddGData.hh"
#include "../src/protocols/dna/DesignProteinBackboneAroundDNA.fwd.hh"
#include "../src/protocols/dna/DesignProteinBackboneAroundDNA.hh"
#include "../src/protocols/dna/DesignProteinBackboneAroundDNACreator.hh"
#include "../src/protocols/dna/DnaChains.fwd.hh"
#include "../src/protocols/dna/DnaChains.hh"
#include "../src/protocols/dna/DnaDesignDef.fwd.hh"
#include "../src/protocols/dna/DnaDesignDef.hh"
#include "../src/protocols/dna/DnaInterfaceFinder.fwd.hh"
#include "../src/protocols/dna/DnaInterfaceFinder.hh"
#include "../src/protocols/dna/DnaInterfaceMinMover.fwd.hh"
#include "../src/protocols/dna/DnaInterfaceMinMover.hh"
#include "../src/protocols/dna/DnaInterfaceMinMoverCreator.hh"
#include "../src/protocols/dna/DnaInterfaceMultiStateDesign.fwd.hh"
#include "../src/protocols/dna/DnaInterfaceMultiStateDesign.hh"
#include "../src/protocols/dna/DnaInterfaceMultiStateDesignCreator.hh"
#include "../src/protocols/dna/DnaInterfacePacker.fwd.hh"
#include "../src/protocols/dna/DnaInterfacePacker.hh"
#include "../src/protocols/dna/DnaInterfacePackerCreator.hh"
#include "../src/protocols/dna/PDBOutput.fwd.hh"
#include "../src/protocols/dna/PDBOutput.hh"
#include "../src/protocols/dna/RestrictDesignToProteinDNAInterface.fwd.hh"
#include "../src/protocols/dna/RestrictDesignToProteinDNAInterface.hh"
#include "../src/protocols/dna/RestrictDesignToProteinDNAInterfaceCreator.hh"
#include "../src/protocols/dna/RotamerDNAHBondFilter.fwd.hh"
#include "../src/protocols/dna/RotamerDNAHBondFilter.hh"
#include "../src/protocols/dna/SeparateDnaFromNonDna.fwd.hh"
#include "../src/protocols/dna/SeparateDnaFromNonDna.hh"
#include "../src/protocols/dna/SeparateDnaFromNonDnaCreator.hh"
#include "../src/protocols/dna/typedefs.hh"
#include "../src/protocols/dna/util.hh"
#include "../src/protocols/dna/WatsonCrickRotamerCouplings.fwd.hh"
#include "../src/protocols/dna/WatsonCrickRotamerCouplings.hh"
#include "../src/protocols/dna/WatsonCrickRotamerCouplingsCreator.hh"
#include "../src/protocols/docking/DockFilters.fwd.hh"
#include "../src/protocols/docking/DockFilters.hh"
#include "../src/protocols/docking/DockingHighRes.fwd.hh"
#include "../src/protocols/docking/DockingHighRes.hh"
#include "../src/protocols/docking/DockingInitialPerturbation.fwd.hh"
#include "../src/protocols/docking/DockingInitialPerturbation.hh"
#include "../src/protocols/docking/DockingLowRes.fwd.hh"
#include "../src/protocols/docking/DockingLowRes.hh"
#include "../src/protocols/docking/DockingPrepackProtocol.fwd.hh"
#include "../src/protocols/docking/DockingPrepackProtocol.hh"
#include "../src/protocols/docking/DockingProtocol.fwd.hh"
#include "../src/protocols/docking/DockingProtocol.hh"
#include "../src/protocols/docking/DockMCMCycle.fwd.hh"
#include "../src/protocols/docking/DockMCMCycle.hh"
#include "../src/protocols/docking/DockMCMProtocol.fwd.hh"
#include "../src/protocols/docking/DockMCMProtocol.hh"
#include "../src/protocols/docking/DockMinMover.fwd.hh"
#include "../src/protocols/docking/DockMinMover.hh"
#include "../src/protocols/docking/DockTaskFactory.fwd.hh"
#include "../src/protocols/docking/DockTaskFactory.hh"
#include "../src/protocols/docking/metrics.hh"
#include "../src/protocols/docking/SidechainMinMover.fwd.hh"
#include "../src/protocols/docking/SidechainMinMover.hh"
#include "../src/protocols/docking/stateless/SaneDockingProtocol.fwd.hh"
#include "../src/protocols/docking/stateless/SaneDockingProtocol.hh"
#include "../src/protocols/docking/types.hh"
#include "../src/protocols/docking/util.hh"
#include "../src/protocols/domain_assembly/AddAssemblyConstraints.fwd.hh"
#include "../src/protocols/domain_assembly/AddAssemblyConstraints.hh"
#include "../src/protocols/domain_assembly/AssembleLinkerMover.fwd.hh"
#include "../src/protocols/domain_assembly/AssembleLinkerMover.hh"
#include "../src/protocols/domain_assembly/CombineChainsMover.fwd.hh"
#include "../src/protocols/domain_assembly/CombineChainsMover.hh"
#include "../src/protocols/domain_assembly/PostDockAssemblyScorer.fwd.hh"
#include "../src/protocols/domain_assembly/PostDockAssemblyScorer.hh"
#include "../src/protocols/electron_density/util.hh"
#include "../src/protocols/enzdes/AddorRemoveCsts.hh"
#include "../src/protocols/enzdes/AddOrRemoveMatchCstsCreator.hh"
#include "../src/protocols/enzdes/DesignVsNativeComparison.hh"
#include "../src/protocols/enzdes/DetectProteinLigandInterfaceOperationCreator.hh"
#include "../src/protocols/enzdes/EnzConstraintIO.fwd.hh"
#include "../src/protocols/enzdes/EnzConstraintIO.hh"
#include "../src/protocols/enzdes/EnzConstraintParameters.hh"
#include "../src/protocols/enzdes/EnzCstTemplateRes.hh"
#include "../src/protocols/enzdes/enzdes_util.hh"
#include "../src/protocols/enzdes/EnzdesBaseProtocol.fwd.hh"
#include "../src/protocols/enzdes/EnzdesBaseProtocol.hh"
#include "../src/protocols/enzdes/EnzdesCacheableObserver.fwd.hh"
#include "../src/protocols/enzdes/EnzdesCacheableObserver.hh"
#include "../src/protocols/enzdes/EnzdesCstCache.fwd.hh"
#include "../src/protocols/enzdes/EnzdesCstCache.hh"
#include "../src/protocols/enzdes/EnzdesFixBBProtocol.hh"
#include "../src/protocols/enzdes/EnzdesFlexBBProtocol.hh"
#include "../src/protocols/enzdes/EnzdesLoopsFile.hh"
#include "../src/protocols/enzdes/EnzdesMovers.fwd.hh"
#include "../src/protocols/enzdes/EnzdesMovers.hh"
#include "../src/protocols/enzdes/EnzdesMoversCreator.hh"
#include "../src/protocols/enzdes/EnzdesSeqRecoveryCache.fwd.hh"
#include "../src/protocols/enzdes/EnzdesSeqRecoveryCache.hh"
#include "../src/protocols/enzdes/EnzdesTaskOperations.fwd.hh"
#include "../src/protocols/enzdes/EnzdesTaskOperations.hh"
#include "../src/protocols/enzdes/EnzFilters.fwd.hh"
#include "../src/protocols/enzdes/EnzFilters.hh"
#include "../src/protocols/enzdes/EnzRepackMinimize.fwd.hh"
#include "../src/protocols/enzdes/EnzRepackMinimize.hh"
#include "../src/protocols/enzdes/EnzRepackMinimizeCreator.hh"
#include "../src/protocols/enzdes/MatchConstraintFileInfo.fwd.hh"
#include "../src/protocols/enzdes/MatchConstraintFileInfo.hh"
#include "../src/protocols/enzdes/ModifyStoredLigandRBConfsMovers.fwd.hh"
#include "../src/protocols/enzdes/ModifyStoredLigandRBConfsMovers.hh"
#include "../src/protocols/enzdes/SecondaryMatchProtocol.hh"
#include "../src/protocols/evaluation/Align_RmsdEvaluator.fwd.hh"
#include "../src/protocols/evaluation/Align_RmsdEvaluator.hh"
#include "../src/protocols/evaluation/Align_RotamerEvaluator.fwd.hh"
#include "../src/protocols/evaluation/Align_RotamerEvaluator.hh"
#include "../src/protocols/evaluation/AlignEvaluator.fwd.hh"
#include "../src/protocols/evaluation/AlignEvaluator.hh"
#include "../src/protocols/evaluation/BatchNrEvaluator.hh"
#include "../src/protocols/evaluation/CamShiftEvaluator.hh"
#include "../src/protocols/evaluation/ChemicalShiftEvaluator.hh"
#include "../src/protocols/evaluation/ClashEvaluator.hh"
#include "../src/protocols/evaluation/ConstraintEvaluator.fwd.hh"
#include "../src/protocols/evaluation/ConstraintEvaluator.hh"
#include "../src/protocols/evaluation/EvaluatedTrialMover.hh"
#include "../src/protocols/evaluation/ExternalEvaluator.hh"
#include "../src/protocols/evaluation/JumpEvaluator.hh"
#include "../src/protocols/evaluation/MinValueEvaluator.hh"
#include "../src/protocols/evaluation/PalesEvaluator.hh"
#include "../src/protocols/evaluation/PCA.fwd.hh"
#include "../src/protocols/evaluation/PCA.hh"
#include "../src/protocols/evaluation/PoseEvaluator.fwd.hh"
#include "../src/protocols/evaluation/PoseEvaluator.hh"
#include "../src/protocols/evaluation/PoseMetricEvaluator.hh"
#include "../src/protocols/evaluation/RDC_Evaluator.hh"
#include "../src/protocols/evaluation/RmsdEvaluator.hh"
#include "../src/protocols/evaluation/RPF_ScoreEvaluator.hh"
#include "../src/protocols/evaluation/ScoreEvaluator.hh"
#include "../src/protocols/evaluation/TimeEvaluator.fwd.hh"
#include "../src/protocols/evaluation/TimeEvaluator.hh"
#include "../src/protocols/evaluation/util.hh"
#include "../src/protocols/fast_sc_mover/SimpleInteractionGraph.fwd.hh"
#include "../src/protocols/fast_sc_mover/SimpleInteractionGraph.hh"
#include "../src/protocols/filters/AbinitioBaseFilter.hh"
#include "../src/protocols/filters/AtomicContactFilter.hh"
#include "../src/protocols/filters/COFilter.hh"
#include "../src/protocols/filters/CompleteConnectionsFilter.hh"
#include "../src/protocols/filters/ContingentFilter.fwd.hh"
#include "../src/protocols/filters/ContingentFilter.hh"
#include "../src/protocols/filters/Filter.fwd.hh"
#include "../src/protocols/filters/Filter.hh"
#include "../src/protocols/filters/HeavyAtomFilter.hh"
#include "../src/protocols/filters/PackerNeighborGraphFilter.hh"
#include "../src/protocols/filters/PDDFScoreFilter.fwd.hh"
#include "../src/protocols/filters/PDDFScoreFilter.hh"
#include "../src/protocols/filters/RGFilter.hh"
#include "../src/protocols/filters/ScoreCutoffFilter.fwd.hh"
#include "../src/protocols/filters/ScoreCutoffFilter.hh"
#include "../src/protocols/filters/SheetFilter.hh"
#include "../src/protocols/fldsgn/BluePrintBDR.fwd.hh"
#include "../src/protocols/fldsgn/BluePrintBDR.hh"
#include "../src/protocols/fldsgn/BluePrintBDRCreator.hh"
#include "../src/protocols/fldsgn/filters/NcontactsFilter.fwd.hh"
#include "../src/protocols/fldsgn/filters/NcontactsFilter.hh"
#include "../src/protocols/fldsgn/filters/SheetTopologyFilter.fwd.hh"
#include "../src/protocols/fldsgn/filters/SheetTopologyFilter.hh"
#include "../src/protocols/fldsgn/sspot/BB_Pos.fwd.hh"
#include "../src/protocols/fldsgn/sspot/BB_Pos.hh"
#include "../src/protocols/fldsgn/sspot/DimerPairing.fwd.hh"
#include "../src/protocols/fldsgn/sspot/DimerPairing.hh"
#include "../src/protocols/fldsgn/sspot/SS_Info2.fwd.hh"
#include "../src/protocols/fldsgn/sspot/SS_Info2.hh"
#include "../src/protocols/fldsgn/topology/BetaAlphaBetaMotif.fwd.hh"
#include "../src/protocols/fldsgn/topology/BetaAlphaBetaMotif.hh"
#include "../src/protocols/fldsgn/topology/HelixPairing.fwd.hh"
#include "../src/protocols/fldsgn/topology/HelixPairing.hh"
#include "../src/protocols/fldsgn/topology/Sheet.fwd.hh"
#include "../src/protocols/fldsgn/topology/Sheet.hh"
#include "../src/protocols/fldsgn/topology/SheetFoldTypeManager.fwd.hh"
#include "../src/protocols/fldsgn/topology/SheetFoldTypeManager.hh"
#include "../src/protocols/fldsgn/topology/SheetTopology.fwd.hh"
#include "../src/protocols/fldsgn/topology/SheetTopology.hh"
#include "../src/protocols/fldsgn/topology/StrandPairing.fwd.hh"
#include "../src/protocols/fldsgn/topology/StrandPairing.hh"
#include "../src/protocols/flexpack/annealer/FlexbbSimAnnealer.fwd.hh"
#include "../src/protocols/flexpack/annealer/FlexbbSimAnnealer.hh"
#include "../src/protocols/flexpack/FlexPacker.fwd.hh"
#include "../src/protocols/flexpack/FlexPacker.hh"
#include "../src/protocols/flexpack/interaction_graph/FlexbbIGFactory.fwd.hh"
#include "../src/protocols/flexpack/interaction_graph/FlexbbIGFactory.hh"
#include "../src/protocols/flexpack/interaction_graph/FlexbbInteractionGraph.fwd.hh"
#include "../src/protocols/flexpack/interaction_graph/FlexbbInteractionGraph.hh"
#include "../src/protocols/flexpack/interaction_graph/FlexbbSparseMatrixIndex.hh"
#include "../src/protocols/flexpack/interaction_graph/MinimalistFlexbbInteractionGraph.fwd.hh"
#include "../src/protocols/flexpack/interaction_graph/MinimalistFlexbbInteractionGraph.hh"
#include "../src/protocols/flexpack/interaction_graph/OTFFlexbbInteractionGraph.fwd.hh"
#include "../src/protocols/flexpack/interaction_graph/OTFFlexbbInteractionGraph.hh"
#include "../src/protocols/flexpack/interaction_graph/PrecomputedFlexbbInteractionGraph.fwd.hh"
#include "../src/protocols/flexpack/interaction_graph/PrecomputedFlexbbInteractionGraph.hh"
#include "../src/protocols/flexpack/OtherContextScoreFunction.hh"
#include "../src/protocols/flexpack/rotamer_set/FlexbbRotamerSet.fwd.hh"
#include "../src/protocols/flexpack/rotamer_set/FlexbbRotamerSet.hh"
#include "../src/protocols/flexpack/rotamer_set/FlexbbRotamerSets.fwd.hh"
#include "../src/protocols/flexpack/rotamer_set/FlexbbRotamerSets.hh"
#include "../src/protocols/flexpep_docking/FlexPepDockingAbInitio.fwd.hh"
#include "../src/protocols/flexpep_docking/FlexPepDockingAbInitio.hh"
#include "../src/protocols/flexpep_docking/FlexPepDockingFlags.fwd.hh"
#include "../src/protocols/flexpep_docking/FlexPepDockingFlags.hh"
#include "../src/protocols/flexpep_docking/FlexPepDockingLowRes.fwd.hh"
#include "../src/protocols/flexpep_docking/FlexPepDockingLowRes.hh"
#include "../src/protocols/flexpep_docking/FlexPepDockingPoseMetrics.fwd.hh"
#include "../src/protocols/flexpep_docking/FlexPepDockingPoseMetrics.hh"
#include "../src/protocols/flexpep_docking/FlexPepDockingProtocol.hh"
#include "../src/protocols/flxbb/BluePrint.fwd.hh"
#include "../src/protocols/flxbb/BluePrint.hh"
#include "../src/protocols/flxbb/DesignLayerOperation.fwd.hh"
#include "../src/protocols/flxbb/DesignLayerOperation.hh"
#include "../src/protocols/flxbb/DesignTask.fwd.hh"
#include "../src/protocols/flxbb/DesignTask.hh"
#include "../src/protocols/flxbb/FilterStructs.fwd.hh"
#include "../src/protocols/flxbb/FilterStructs.hh"
#include "../src/protocols/flxbb/FlxbbDesign.fwd.hh"
#include "../src/protocols/flxbb/FlxbbDesign.hh"
#include "../src/protocols/flxbb/FlxbbDesign_main.hh"
#include "../src/protocols/flxbb/FlxbbDesignCreator.hh"
#include "../src/protocols/flxbb/utility.hh"
#include "../src/protocols/forge/build/Bridge.fwd.hh"
#include "../src/protocols/forge/build/Bridge.hh"
#include "../src/protocols/forge/build/BuildInstruction.fwd.hh"
#include "../src/protocols/forge/build/BuildInstruction.hh"
#include "../src/protocols/forge/build/BuildManager.fwd.hh"
#include "../src/protocols/forge/build/BuildManager.hh"
#include "../src/protocols/forge/build/ConnectRight.fwd.hh"
#include "../src/protocols/forge/build/ConnectRight.hh"
#include "../src/protocols/forge/build/GrowLeft.fwd.hh"
#include "../src/protocols/forge/build/GrowLeft.hh"
#include "../src/protocols/forge/build/GrowRight.fwd.hh"
#include "../src/protocols/forge/build/GrowRight.hh"
#include "../src/protocols/forge/build/Interval.fwd.hh"
#include "../src/protocols/forge/build/Interval.hh"
#include "../src/protocols/forge/build/RelativeConnectRight.fwd.hh"
#include "../src/protocols/forge/build/RelativeConnectRight.hh"
#include "../src/protocols/forge/build/RelativeSequencePosition.fwd.hh"
#include "../src/protocols/forge/build/RelativeSequencePosition.hh"
#include "../src/protocols/forge/build/SegmentInsert.fwd.hh"
#include "../src/protocols/forge/build/SegmentInsert.hh"
#include "../src/protocols/forge/build/SegmentRebuild.fwd.hh"
#include "../src/protocols/forge/build/SegmentRebuild.hh"
#include "../src/protocols/forge/build/SegmentSwap.fwd.hh"
#include "../src/protocols/forge/build/SegmentSwap.hh"
#include "../src/protocols/forge/components/BDR.fwd.hh"
#include "../src/protocols/forge/components/BDR.hh"
#include "../src/protocols/forge/components/BDRSegmentInfo.fwd.hh"
#include "../src/protocols/forge/components/BDRSegmentInfo.hh"
#include "../src/protocols/forge/components/VarLengthBuild.fwd.hh"
#include "../src/protocols/forge/components/VarLengthBuild.hh"
#include "../src/protocols/forge/constraints/ConstraintFileRCG.fwd.hh"
#include "../src/protocols/forge/constraints/ConstraintFileRCG.hh"
#include "../src/protocols/forge/constraints/InverseRotamersRCG.fwd.hh"
#include "../src/protocols/forge/constraints/InverseRotamersRCG.hh"
#include "../src/protocols/forge/constraints/NtoC_RCG.fwd.hh"
#include "../src/protocols/forge/constraints/NtoC_RCG.hh"
#include "../src/protocols/forge/constraints/SheetConstraintsRCG.fwd.hh"
#include "../src/protocols/forge/constraints/SheetConstraintsRCG.hh"
#include "../src/protocols/forge/methods/chainbreak_eval.hh"
#include "../src/protocols/forge/methods/fold_tree_functions.hh"
#include "../src/protocols/forge/methods/fragment_functions.hh"
#include "../src/protocols/forge/methods/pose_mod.hh"
#include "../src/protocols/forge/methods/util.hh"
#include "../src/protocols/forge/remodel/RemodelAccumulator.hh"
#include "../src/protocols/forge/remodel/RemodelConstraintGenerator.fwd.hh"
#include "../src/protocols/forge/remodel/RemodelConstraintGenerator.hh"
#include "../src/protocols/forge/remodel/RemodelData.hh"
#include "../src/protocols/forge/remodel/RemodelDesignMover.hh"
#include "../src/protocols/forge/remodel/RemodelEnzdesCstModule.hh"
#include "../src/protocols/forge/remodel/RemodelLoopMover.fwd.hh"
#include "../src/protocols/forge/remodel/RemodelLoopMover.hh"
#include "../src/protocols/forge/remodel/RemodelMover.fwd.hh"
#include "../src/protocols/forge/remodel/RemodelMover.hh"
#include "../src/protocols/forge/remodel/RemodelWorkingSet.hh"
#include "../src/protocols/forge/remodel/ResidueVicinityRCG.hh"
#include "../src/protocols/frags/heap.hh"
#include "../src/protocols/frags/TorsionFragment.fwd.hh"
#include "../src/protocols/frags/TorsionFragment.hh"
#include "../src/protocols/frags/VallData.fwd.hh"
#include "../src/protocols/frags/VallData.hh"
#include "../src/protocols/genetic_algorithm/Entity.fwd.hh"
#include "../src/protocols/genetic_algorithm/Entity.hh"
#include "../src/protocols/genetic_algorithm/EntityRandomizer.hh"
#include "../src/protocols/genetic_algorithm/FitnessFunction.hh"
#include "../src/protocols/genetic_algorithm/GeneticAlgorithm.fwd.hh"
#include "../src/protocols/genetic_algorithm/GeneticAlgorithm.hh"
#include "../src/protocols/geometry/RB_geometry.hh"
#include "../src/protocols/hotspot_hashing/HotspotStub.fwd.hh"
#include "../src/protocols/hotspot_hashing/HotspotStub.hh"
#include "../src/protocols/hotspot_hashing/HotspotStubSet.fwd.hh"
#include "../src/protocols/hotspot_hashing/HotspotStubSet.hh"
#include "../src/protocols/idealize/idealize.hh"
#include "../src/protocols/idealize/IdealizeMover.fwd.hh"
#include "../src/protocols/idealize/IdealizeMover.hh"
#include "../src/protocols/init.hh"
#include "../src/protocols/jd2/archive/ArchiveBase.fwd.hh"
#include "../src/protocols/jd2/archive/ArchiveBase.hh"
#include "../src/protocols/jd2/archive/ArchiveManager.fwd.hh"
#include "../src/protocols/jd2/archive/ArchiveManager.hh"
#include "../src/protocols/jd2/archive/ArchiveMasterBase.hh"
#include "../src/protocols/jd2/archive/EvaluatedArchive.hh"
#include "../src/protocols/jd2/archive/MPIArchiveJobDistributor.fwd.hh"
#include "../src/protocols/jd2/archive/MPIArchiveJobDistributor.hh"
#include "../src/protocols/jd2/AtomTreeDiffJobInputter.fwd.hh"
#include "../src/protocols/jd2/AtomTreeDiffJobInputter.hh"
#include "../src/protocols/jd2/AtomTreeDiffJobOutputter.fwd.hh"
#include "../src/protocols/jd2/AtomTreeDiffJobOutputter.hh"
#include "../src/protocols/jd2/BatchJobInputter.fwd.hh"
#include "../src/protocols/jd2/BatchJobInputter.hh"
#include "../src/protocols/jd2/BOINCJobDistributor.hh"
#include "../src/protocols/jd2/DockDesignParser.hh"
#include "../src/protocols/jd2/EnzdesJobInputter.fwd.hh"
#include "../src/protocols/jd2/EnzdesJobInputter.hh"
#include "../src/protocols/jd2/EnzdesJobOutputter.fwd.hh"
#include "../src/protocols/jd2/EnzdesJobOutputter.hh"
#include "../src/protocols/jd2/FileJobOutputter.fwd.hh"
#include "../src/protocols/jd2/FileJobOutputter.hh"
#include "../src/protocols/jd2/FileSystemJobDistributor.fwd.hh"
#include "../src/protocols/jd2/FileSystemJobDistributor.hh"
#include "../src/protocols/jd2/GenericJobInputter.fwd.hh"
#include "../src/protocols/jd2/GenericJobInputter.hh"
#include "../src/protocols/jd2/InnerMultiThreadingJob.fwd.hh"
#include "../src/protocols/jd2/InnerMultiThreadingJob.hh"
#include "../src/protocols/jd2/Job.fwd.hh"
#include "../src/protocols/jd2/Job.hh"
#include "../src/protocols/jd2/JobDistributor.fwd.hh"
#include "../src/protocols/jd2/JobDistributor.hh"
#include "../src/protocols/jd2/JobDistributorFactory.fwd.hh"
#include "../src/protocols/jd2/JobDistributorFactory.hh"
#include "../src/protocols/jd2/JobInputter.fwd.hh"
#include "../src/protocols/jd2/JobInputter.hh"
#include "../src/protocols/jd2/JobOutputter.fwd.hh"
#include "../src/protocols/jd2/JobOutputter.hh"
#include "../src/protocols/jd2/MpiFileBuffer.fwd.hh"
#include "../src/protocols/jd2/MpiFileBuffer.hh"
#include "../src/protocols/jd2/MPIFileBufJobDistributor.fwd.hh"
#include "../src/protocols/jd2/MPIFileBufJobDistributor.hh"
#include "../src/protocols/jd2/MPIWorkPartitionJobDistributor.fwd.hh"
#include "../src/protocols/jd2/MPIWorkPartitionJobDistributor.hh"
#include "../src/protocols/jd2/MPIWorkPoolJobDistributor.fwd.hh"
#include "../src/protocols/jd2/MPIWorkPoolJobDistributor.hh"
#include "../src/protocols/jd2/MultiThreadingJob.fwd.hh"
#include "../src/protocols/jd2/MultiThreadingJob.hh"
#include "../src/protocols/jd2/NoOutputJobOutputter.hh"
#include "../src/protocols/jd2/Parser.fwd.hh"
#include "../src/protocols/jd2/Parser.hh"
#include "../src/protocols/jd2/PDBJobInputter.fwd.hh"
#include "../src/protocols/jd2/PDBJobInputter.hh"
#include "../src/protocols/jd2/PDBJobOutputter.fwd.hh"
#include "../src/protocols/jd2/PDBJobOutputter.hh"
#include "../src/protocols/jd2/ScoreOnlyJobOutputter.fwd.hh"
#include "../src/protocols/jd2/ScoreOnlyJobOutputter.hh"
#include "../src/protocols/jd2/ShuffleJobDistributor.hh"
#include "../src/protocols/jd2/SilentFileJobInputter.fwd.hh"
#include "../src/protocols/jd2/SilentFileJobInputter.hh"
#include "../src/protocols/jd2/SilentFileJobOutputter.fwd.hh"
#include "../src/protocols/jd2/SilentFileJobOutputter.hh"
#include "../src/protocols/jd2/SingleFileBuffer.fwd.hh"
#include "../src/protocols/jd2/SingleFileBuffer.hh"
#include "../src/protocols/jd2/ThreadingJob.fwd.hh"
#include "../src/protocols/jd2/ThreadingJob.hh"
#include "../src/protocols/jd2/ThreadingJobInputter.fwd.hh"
#include "../src/protocols/jd2/ThreadingJobInputter.hh"
#include "../src/protocols/jd2/util.hh"
#include "../src/protocols/jobdist/JobDistributors.fwd.hh"
#include "../src/protocols/jobdist/JobDistributors.hh"
#include "../src/protocols/jobdist/Jobs.fwd.hh"
#include "../src/protocols/jobdist/Jobs.hh"
#include "../src/protocols/jobdist/not_universal_main.hh"
#include "../src/protocols/jobdist/standard_mains.hh"
#include "../src/protocols/jumping/DisulfPairingLibrary.hh"
#include "../src/protocols/jumping/DisulfPairingsList.fwd.hh"
#include "../src/protocols/jumping/DisulfPairingsList.hh"
#include "../src/protocols/jumping/Dssp.hh"
#include "../src/protocols/jumping/JumpSample.hh"
#include "../src/protocols/jumping/JumpSetup.fwd.hh"
#include "../src/protocols/jumping/JumpSetup.hh"
#include "../src/protocols/jumping/MembraneJump.fwd.hh"
#include "../src/protocols/jumping/MembraneJump.hh"
#include "../src/protocols/jumping/PairingLibrary.fwd.hh"
#include "../src/protocols/jumping/PairingLibrary.hh"
#include "../src/protocols/jumping/PairingsList.fwd.hh"
#include "../src/protocols/jumping/PairingsList.hh"
#include "../src/protocols/jumping/RandomSheetBuilder.hh"
#include "../src/protocols/jumping/ResiduePairJump.fwd.hh"
#include "../src/protocols/jumping/ResiduePairJump.hh"
#include "../src/protocols/jumping/ResiduePairJumpSetup.fwd.hh"
#include "../src/protocols/jumping/ResiduePairJumpSetup.hh"
#include "../src/protocols/jumping/SameStrand.fwd.hh"
#include "../src/protocols/jumping/SameStrand.hh"
#include "../src/protocols/jumping/SheetBuilder.hh"
#include "../src/protocols/jumping/StrandPairing.fwd.hh"
#include "../src/protocols/jumping/StrandPairing.hh"
#include "../src/protocols/jumping/util.hh"
#include "../src/protocols/ligand_docking/AddHydrogen.fwd.hh"
#include "../src/protocols/ligand_docking/AddHydrogen.hh"
#include "../src/protocols/ligand_docking/AddHydrogens.fwd.hh"
#include "../src/protocols/ligand_docking/AddHydrogens.hh"
#include "../src/protocols/ligand_docking/AddHydrogensCreator.hh"
#include "../src/protocols/ligand_docking/CompoundTranslate.hh"
#include "../src/protocols/ligand_docking/CompoundTranslateCreator.hh"
#include "../src/protocols/ligand_docking/DistributionMap.hh"
#include "../src/protocols/ligand_docking/FinalMinimizer.fwd.hh"
#include "../src/protocols/ligand_docking/FinalMinimizer.hh"
#include "../src/protocols/ligand_docking/FinalMinimizerCreator.hh"
#include "../src/protocols/ligand_docking/grid_functions.hh"
#include "../src/protocols/ligand_docking/GrowLigand.fwd.hh"
#include "../src/protocols/ligand_docking/GrowLigand.hh"
#include "../src/protocols/ligand_docking/GrowLigandCreator.hh"
#include "../src/protocols/ligand_docking/HighResDocker.fwd.hh"
#include "../src/protocols/ligand_docking/HighResDocker.hh"
#include "../src/protocols/ligand_docking/HighResDockerCreator.hh"
#include "../src/protocols/ligand_docking/InterfaceBuilder.fwd.hh"
#include "../src/protocols/ligand_docking/InterfaceBuilder.hh"
#include "../src/protocols/ligand_docking/InterfaceScoreCalculator.fwd.hh"
#include "../src/protocols/ligand_docking/InterfaceScoreCalculator.hh"
#include "../src/protocols/ligand_docking/InterfaceScoreCalculatorCreator.hh"
#include "../src/protocols/ligand_docking/ligand_dock_impl.hh"
#include "../src/protocols/ligand_docking/ligand_functions.hh"
#include "../src/protocols/ligand_docking/ligand_options/chain_functions.hh"
#include "../src/protocols/ligand_docking/ligand_options/Interface.fwd.hh"
#include "../src/protocols/ligand_docking/ligand_options/Interface.hh"
#include "../src/protocols/ligand_docking/ligand_options/interface_distance_functions.hh"
#include "../src/protocols/ligand_docking/ligand_scores.hh"
#include "../src/protocols/ligand_docking/LigandBaseProtocol.hh"
#include "../src/protocols/ligand_docking/LigandDesign.fwd.hh"
#include "../src/protocols/ligand_docking/LigandDesign.hh"
#include "../src/protocols/ligand_docking/LigandDesignCreator.hh"
#include "../src/protocols/ligand_docking/LigandDockProtocol.fwd.hh"
#include "../src/protocols/ligand_docking/LigandDockProtocol.hh"
#include "../src/protocols/ligand_docking/MinimizeBackbone.fwd.hh"
#include "../src/protocols/ligand_docking/MinimizeBackbone.hh"
#include "../src/protocols/ligand_docking/MinimizeBackboneCreator.hh"
#include "../src/protocols/ligand_docking/MinimizeLigand.fwd.hh"
#include "../src/protocols/ligand_docking/MinimizeLigand.hh"
#include "../src/protocols/ligand_docking/MinimizeLigandCreator.hh"
#include "../src/protocols/ligand_docking/MoveMapBuilder.fwd.hh"
#include "../src/protocols/ligand_docking/MoveMapBuilder.hh"
#include "../src/protocols/ligand_docking/MultiResidueLigandDock.fwd.hh"
#include "../src/protocols/ligand_docking/MultiResidueLigandDock.hh"
#include "../src/protocols/ligand_docking/RandomConformerMover.fwd.hh"
#include "../src/protocols/ligand_docking/RandomConformerMover.hh"
#include "../src/protocols/ligand_docking/RandomConformers.hh"
#include "../src/protocols/ligand_docking/RandomConformersCreator.hh"
#include "../src/protocols/ligand_docking/ResidueTorsionRestraints.fwd.hh"
#include "../src/protocols/ligand_docking/ResidueTorsionRestraints.hh"
#include "../src/protocols/ligand_docking/RigidSearchMover.fwd.hh"
#include "../src/protocols/ligand_docking/RigidSearchMover.hh"
#include "../src/protocols/ligand_docking/Rotate.fwd.hh"
#include "../src/protocols/ligand_docking/Rotate.hh"
#include "../src/protocols/ligand_docking/RotateCreator.hh"
#include "../src/protocols/ligand_docking/SlideTogether.hh"
#include "../src/protocols/ligand_docking/SlideTogetherCreator.hh"
#include "../src/protocols/ligand_docking/StartFrom.hh"
#include "../src/protocols/ligand_docking/StartFromCreator.hh"
#include "../src/protocols/ligand_docking/TetherLigand.hh"
#include "../src/protocols/ligand_docking/TetherLigandCreator.hh"
#include "../src/protocols/ligand_docking/Translate.fwd.hh"
#include "../src/protocols/ligand_docking/Translate.hh"
#include "../src/protocols/ligand_docking/TranslateCreator.hh"
#include "../src/protocols/ligand_docking/UnconstrainedTorsionsMover.fwd.hh"
#include "../src/protocols/ligand_docking/UnconstrainedTorsionsMover.hh"
#include "../src/protocols/loops/BackboneDB.hh"
#include "../src/protocols/loops/ccd_closure.hh"
#include "../src/protocols/loops/CcdLoopClosureMover.hh"
#include "../src/protocols/loops/Exceptions.hh"
#include "../src/protocols/loops/FASelectSlidingWindowLoopClosure.hh"
#include "../src/protocols/loops/IndependentLoopMover.fwd.hh"
#include "../src/protocols/loops/IndependentLoopMover.hh"
#include "../src/protocols/loops/KinematicWrapper.fwd.hh"
#include "../src/protocols/loops/KinematicWrapper.hh"
#include "../src/protocols/loops/LocalInserter.fwd.hh"
#include "../src/protocols/loops/LocalInserter.hh"
#include "../src/protocols/loops/Loop.fwd.hh"
#include "../src/protocols/loops/Loop.hh"
#include "../src/protocols/loops/LoopBuild.hh"
#include "../src/protocols/loops/LoopClosure.fwd.hh"
#include "../src/protocols/loops/LoopClosure.hh"
#include "../src/protocols/loops/loopfinder.hh"
#include "../src/protocols/loops/LoopHashInserter.fwd.hh"
#include "../src/protocols/loops/LoopHashLibrary.fwd.hh"
#include "../src/protocols/loops/LoopHashLibrary.hh"
#include "../src/protocols/loops/LoopHashMap.hh"
#include "../src/protocols/loops/LoopHashSampler.fwd.hh"
#include "../src/protocols/loops/LoopHashSampler.hh"
#include "../src/protocols/loops/LoopMover.fwd.hh"
#include "../src/protocols/loops/LoopMover.hh"
#include "../src/protocols/loops/LoopMover_Backrub.hh"
#include "../src/protocols/loops/LoopMover_CCD.hh"
#include "../src/protocols/loops/LoopMover_KIC.hh"
#include "../src/protocols/loops/LoopMover_QuickCCD.hh"
#include "../src/protocols/loops/LoopMover_QuickCCD_Moves.hh"
#include "../src/protocols/loops/LoopMover_SlidingWindow.hh"
#include "../src/protocols/loops/LoopMoverFactory.hh"
#include "../src/protocols/loops/looprelax_protocols.hh"
#include "../src/protocols/loops/LoopRelaxMover.fwd.hh"
#include "../src/protocols/loops/LoopRelaxMover.hh"
#include "../src/protocols/loops/LoopRelaxThreadingMover.fwd.hh"
#include "../src/protocols/loops/LoopRelaxThreadingMover.hh"
#include "../src/protocols/loops/Loops.fwd.hh"
#include "../src/protocols/loops/Loops.hh"
#include "../src/protocols/loops/loops_main.hh"
#include "../src/protocols/loops/make_loops.hh"
#include "../src/protocols/loops/MPI_LoopHashRefine.hh"
#include "../src/protocols/loops/ShortLoopClosure.hh"
#include "../src/protocols/loops/SlidingWindowLoopClosure.fwd.hh"
#include "../src/protocols/loops/SlidingWindowLoopClosure.hh"
#include "../src/protocols/loops/util.hh"
#include "../src/protocols/loops/WidthFirstSlidingWindowLoopClosure.fwd.hh"
#include "../src/protocols/loops/WidthFirstSlidingWindowLoopClosure.hh"
#include "../src/protocols/loops/WorkUnit_LoopHash.hh"
#include "../src/protocols/match/BumpGrid.fwd.hh"
#include "../src/protocols/match/BumpGrid.hh"
#include "../src/protocols/match/downstream/ActiveSiteGrid.fwd.hh"
#include "../src/protocols/match/downstream/ActiveSiteGrid.hh"
#include "../src/protocols/match/downstream/ClassicMatchAlgorithm.fwd.hh"
#include "../src/protocols/match/downstream/ClassicMatchAlgorithm.hh"
#include "../src/protocols/match/downstream/DownstreamAlgorithm.fwd.hh"
#include "../src/protocols/match/downstream/DownstreamAlgorithm.hh"
#include "../src/protocols/match/downstream/DownstreamBuilder.fwd.hh"
#include "../src/protocols/match/downstream/DownstreamBuilder.hh"
#include "../src/protocols/match/downstream/ExternalGeomSampler.fwd.hh"
#include "../src/protocols/match/downstream/ExternalGeomSampler.hh"
#include "../src/protocols/match/downstream/GeometrySecMatchRPE.fwd.hh"
#include "../src/protocols/match/downstream/GeometrySecMatchRPE.hh"
#include "../src/protocols/match/downstream/LigandConformer.fwd.hh"
#include "../src/protocols/match/downstream/LigandConformer.hh"
#include "../src/protocols/match/downstream/LigandConformerBuilder.fwd.hh"
#include "../src/protocols/match/downstream/LigandConformerBuilder.hh"
#include "../src/protocols/match/downstream/RigidLigandBuilder.fwd.hh"
#include "../src/protocols/match/downstream/RigidLigandBuilder.hh"
#include "../src/protocols/match/downstream/ScoringSecMatchRPE.fwd.hh"
#include "../src/protocols/match/downstream/ScoringSecMatchRPE.hh"
#include "../src/protocols/match/downstream/SecMatchEvaluatorFactory.hh"
#include "../src/protocols/match/downstream/SecMatchResiduePairEvaluator.fwd.hh"
#include "../src/protocols/match/downstream/SecMatchResiduePairEvaluator.hh"
#include "../src/protocols/match/downstream/SecondaryMatcherToDownstreamResidue.fwd.hh"
#include "../src/protocols/match/downstream/SecondaryMatcherToDownstreamResidue.hh"
#include "../src/protocols/match/downstream/SecondaryMatcherToUpstreamResidue.fwd.hh"
#include "../src/protocols/match/downstream/SecondaryMatcherToUpstreamResidue.hh"
#include "../src/protocols/match/Hit.fwd.hh"
#include "../src/protocols/match/Hit.hh"
#include "../src/protocols/match/Matcher.fwd.hh"
#include "../src/protocols/match/Matcher.hh"
#include "../src/protocols/match/MatcherTask.fwd.hh"
#include "../src/protocols/match/MatcherTask.hh"
#include "../src/protocols/match/MatchPositionModifiers.fwd.hh"
#include "../src/protocols/match/MatchPositionModifiers.hh"
#include "../src/protocols/match/MatchSet.fwd.hh"
#include "../src/protocols/match/MatchSet.hh"
#include "../src/protocols/match/OccupiedSpaceHash.fwd.hh"
#include "../src/protocols/match/OccupiedSpaceHash.hh"
#include "../src/protocols/match/output/DownstreamRMSEvaluator.fwd.hh"
#include "../src/protocols/match/output/DownstreamRMSEvaluator.hh"
#include "../src/protocols/match/output/LimitHitsPerRotamerFilter.fwd.hh"
#include "../src/protocols/match/output/LimitHitsPerRotamerFilter.hh"
#include "../src/protocols/match/output/MatchConsolidator.fwd.hh"
#include "../src/protocols/match/output/MatchConsolidator.hh"
#include "../src/protocols/match/output/MatchEvaluator.fwd.hh"
#include "../src/protocols/match/output/MatchEvaluator.hh"
#include "../src/protocols/match/output/MatchFilter.fwd.hh"
#include "../src/protocols/match/output/MatchFilter.hh"
#include "../src/protocols/match/output/MatchGrouper.fwd.hh"
#include "../src/protocols/match/output/MatchGrouper.hh"
#include "../src/protocols/match/output/MatchOutputter.fwd.hh"
#include "../src/protocols/match/output/MatchOutputter.hh"
#include "../src/protocols/match/output/MatchProcessor.fwd.hh"
#include "../src/protocols/match/output/MatchProcessor.hh"
#include "../src/protocols/match/output/OutputWriter.fwd.hh"
#include "../src/protocols/match/output/OutputWriter.hh"
#include "../src/protocols/match/output/PDBWriter.fwd.hh"
#include "../src/protocols/match/output/PDBWriter.hh"
#include "../src/protocols/match/output/PoseInserter.fwd.hh"
#include "../src/protocols/match/output/PoseInserter.hh"
#include "../src/protocols/match/output/ProcessorFactory.fwd.hh"
#include "../src/protocols/match/output/ProcessorFactory.hh"
#include "../src/protocols/match/output/SameChiBinComboGrouper.fwd.hh"
#include "../src/protocols/match/output/SameChiBinComboGrouper.hh"
#include "../src/protocols/match/output/SameRotamerComboGrouper.fwd.hh"
#include "../src/protocols/match/output/SameRotamerComboGrouper.hh"
#include "../src/protocols/match/output/SameSequenceGrouper.fwd.hh"
#include "../src/protocols/match/output/SameSequenceGrouper.hh"
#include "../src/protocols/match/output/UpstreamCollisionFilter.fwd.hh"
#include "../src/protocols/match/output/UpstreamCollisionFilter.hh"
#include "../src/protocols/match/output/UpstreamDownstreamCollisionFilter.fwd.hh"
#include "../src/protocols/match/output/UpstreamDownstreamCollisionFilter.hh"
#include "../src/protocols/match/output/UpstreamHitCacher.fwd.hh"
#include "../src/protocols/match/output/UpstreamHitCacher.hh"
#include "../src/protocols/match/output/WriteKinemageOutputter.fwd.hh"
#include "../src/protocols/match/output/WriteKinemageOutputter.hh"
#include "../src/protocols/match/output/WriteUpstreamCoordinateKineamge.fwd.hh"
#include "../src/protocols/match/output/WriteUpstreamCoordinateKineamge.hh"
#include "../src/protocols/match/ReachabilityGrid.fwd.hh"
#include "../src/protocols/match/ReachabilityGrid.hh"
#include "../src/protocols/match/SixDHasher.fwd.hh"
#include "../src/protocols/match/SixDHasher.hh"
#include "../src/protocols/match/upstream/FlexSegBuildPoint.fwd.hh"
#include "../src/protocols/match/upstream/FlexSegBuildPoint.hh"
#include "../src/protocols/match/upstream/OriginalScaffoldBuildPoint.fwd.hh"
#include "../src/protocols/match/upstream/OriginalScaffoldBuildPoint.hh"
#include "../src/protocols/match/upstream/ProteinSCSampler.fwd.hh"
#include "../src/protocols/match/upstream/ProteinSCSampler.hh"
#include "../src/protocols/match/upstream/ProteinUpstreamBuilder.fwd.hh"
#include "../src/protocols/match/upstream/ProteinUpstreamBuilder.hh"
#include "../src/protocols/match/upstream/ScaffoldBuildPoint.fwd.hh"
#include "../src/protocols/match/upstream/ScaffoldBuildPoint.hh"
#include "../src/protocols/match/upstream/UpstreamBuilder.fwd.hh"
#include "../src/protocols/match/upstream/UpstreamBuilder.hh"
#include "../src/protocols/match/upstream/UpstreamResTypeGeometry.fwd.hh"
#include "../src/protocols/match/upstream/UpstreamResTypeGeometry.hh"
#include "../src/protocols/match/VoxelSetIterator.fwd.hh"
#include "../src/protocols/match/VoxelSetIterator.hh"
#include "../src/protocols/motifs/IRCollection.fwd.hh"
#include "../src/protocols/motifs/IRCollection.hh"
#include "../src/protocols/motifs/Motif.fwd.hh"
#include "../src/protocols/motifs/Motif.hh"
#include "../src/protocols/motifs/motif_utils.hh"
#include "../src/protocols/motifs/MotifLibrary.fwd.hh"
#include "../src/protocols/motifs/MotifLibrary.hh"
#include "../src/protocols/moves/AddCavitiesMover.hh"
#include "../src/protocols/moves/asym_fold_and_dock/AsymFoldandDockMoveRbJumpMover.fwd.hh"
#include "../src/protocols/moves/asym_fold_and_dock/AsymFoldandDockMoveRbJumpMover.hh"
#include "../src/protocols/moves/asym_fold_and_dock/AsymFoldandDockRbTrialMover.fwd.hh"
#include "../src/protocols/moves/asym_fold_and_dock/AsymFoldandDockRbTrialMover.hh"
#include "../src/protocols/moves/BackboneMover.fwd.hh"
#include "../src/protocols/moves/BackboneMover.hh"
#include "../src/protocols/moves/BackboneMoverCreator.hh"
#include "../src/protocols/moves/BackrubMover.fwd.hh"
#include "../src/protocols/moves/BackrubMover.hh"
#include "../src/protocols/moves/BackrubMoverCreator.hh"
#include "../src/protocols/moves/BackrubSegment.hh"
#include "../src/protocols/moves/BackrubSidechainMover.fwd.hh"
#include "../src/protocols/moves/BackrubSidechainMover.hh"
#include "../src/protocols/moves/BackrubSidechainMoverCreator.hh"
#include "../src/protocols/moves/BBConRotMover.fwd.hh"
#include "../src/protocols/moves/BBConRotMover.hh"
#include "../src/protocols/moves/BBGaussianMover.fwd.hh"
#include "../src/protocols/moves/BBGaussianMover.hh"
#include "../src/protocols/moves/BoolMover.hh"
#include "../src/protocols/moves/CanonicalSamplingMover.fwd.hh"
#include "../src/protocols/moves/CanonicalSamplingMover.hh"
#include "../src/protocols/moves/CDRH3Modeler.hh"
#include "../src/protocols/moves/ChangeFoldTreeMover.fwd.hh"
#include "../src/protocols/moves/ChangeFoldTreeMover.hh"
#include "../src/protocols/moves/CompositionMover.fwd.hh"
#include "../src/protocols/moves/CompositionMover.hh"
#include "../src/protocols/moves/ConformerSwitchMover.fwd.hh"
#include "../src/protocols/moves/ConformerSwitchMover.hh"
#include "../src/protocols/moves/ConformerSwitchMoverCreator.hh"
#include "../src/protocols/moves/ConstraintSetMover.fwd.hh"
#include "../src/protocols/moves/ConstraintSetMover.hh"
#include "../src/protocols/moves/ConstraintSetMoverCreator.hh"
#include "../src/protocols/moves/DataMap.fwd.hh"
#include "../src/protocols/moves/DataMap.hh"
#include "../src/protocols/moves/ddGMover.hh"
#include "../src/protocols/moves/DME_FilterMover.hh"
#include "../src/protocols/moves/DOFHistogramRecorder.fwd.hh"
#include "../src/protocols/moves/DOFHistogramRecorder.hh"
#include "../src/protocols/moves/DsspMover.fwd.hh"
#include "../src/protocols/moves/DsspMover.hh"
#include "../src/protocols/moves/DsspMoverCreator.hh"
#include "../src/protocols/moves/FilterMover.fwd.hh"
#include "../src/protocols/moves/FilterMover.hh"
#include "../src/protocols/moves/GenericMonteCarloMover.fwd.hh"
#include "../src/protocols/moves/GenericMonteCarloMover.hh"
#include "../src/protocols/moves/GenericMonteCarloMoverCreator.hh"
#include "../src/protocols/moves/GraftMover.hh"
#include "../src/protocols/moves/GreenPacker.fwd.hh"
#include "../src/protocols/moves/GreenPacker.hh"
#include "../src/protocols/moves/HelicalPeptideLengthMover.fwd.hh"
#include "../src/protocols/moves/HelicalPeptideLengthMover.hh"
#include "../src/protocols/moves/IfMover.hh"
#include "../src/protocols/moves/IfMoverCreator.hh"
#include "../src/protocols/moves/JumpOutMover.fwd.hh"
#include "../src/protocols/moves/JumpOutMover.hh"
#include "../src/protocols/moves/kinematic_closure/bridgeObjects.hh"
#include "../src/protocols/moves/kinematic_closure/dixon.hh"
#include "../src/protocols/moves/kinematic_closure/kinematic_closure_helpers.hh"
#include "../src/protocols/moves/kinematic_closure/KinematicPerturber.fwd.hh"
#include "../src/protocols/moves/kinematic_closure/KinematicPerturber.hh"
#include "../src/protocols/moves/kinematic_closure/sturm.hh"
#include "../src/protocols/moves/KinematicMover.fwd.hh"
#include "../src/protocols/moves/KinematicMover.hh"
#include "../src/protocols/moves/MatcherMover.fwd.hh"
#include "../src/protocols/moves/MatcherMover.hh"
#include "../src/protocols/moves/mc_convergence_checks/ConvergenceCheck.fwd.hh"
#include "../src/protocols/moves/mc_convergence_checks/ConvergenceCheck.hh"
#include "../src/protocols/moves/mc_convergence_checks/Heat_ConvergenceCheck.hh"
#include "../src/protocols/moves/mc_convergence_checks/HierarchicalLevel.fwd.hh"
#include "../src/protocols/moves/mc_convergence_checks/HierarchicalLevel.hh"
#include "../src/protocols/moves/mc_convergence_checks/HPool.fwd.hh"
#include "../src/protocols/moves/mc_convergence_checks/HPool.hh"
#include "../src/protocols/moves/mc_convergence_checks/MPIBPool_ConvergenceCheck.fwd.hh"
#include "../src/protocols/moves/mc_convergence_checks/MPIBPool_ConvergenceCheck.hh"
#include "../src/protocols/moves/mc_convergence_checks/MPIHPool_ConvergenceCheck.fwd.hh"
#include "../src/protocols/moves/mc_convergence_checks/MPIHPool_ConvergenceCheck.hh"
#include "../src/protocols/moves/mc_convergence_checks/MPIPool_ConvergenceCheck.fwd.hh"
#include "../src/protocols/moves/mc_convergence_checks/MPIPool_ConvergenceCheck.hh"
#include "../src/protocols/moves/mc_convergence_checks/Pool_ConvergenceCheck.hh"
#include "../src/protocols/moves/mc_convergence_checks/pool_util.hh"
#include "../src/protocols/moves/mc_convergence_checks/util.hh"
#include "../src/protocols/moves/MetropolisHastingsMover.fwd.hh"
#include "../src/protocols/moves/MetropolisHastingsMover.hh"
#include "../src/protocols/moves/MetropolisHastingsMoverCreator.hh"
#include "../src/protocols/moves/MinMover.fwd.hh"
#include "../src/protocols/moves/MinMover.hh"
#include "../src/protocols/moves/MinMoverCreator.hh"
#include "../src/protocols/moves/MonteCarlo.fwd.hh"
#include "../src/protocols/moves/MonteCarlo.hh"
#include "../src/protocols/moves/MonteCarlo.tmpl.hh"
#include "../src/protocols/moves/MonteCarloStatus.hh"
#include "../src/protocols/moves/Mover.fwd.hh"
#include "../src/protocols/moves/Mover.hh"
#include "../src/protocols/moves/MoverContainer.fwd.hh"
#include "../src/protocols/moves/MoverContainer.hh"
#include "../src/protocols/moves/MoverCreator.hh"
#include "../src/protocols/moves/MoverFactory.fwd.hh"
#include "../src/protocols/moves/MoverFactory.hh"
#include "../src/protocols/moves/MoverList.hh"
#include "../src/protocols/moves/MoverStatistics.hh"
#include "../src/protocols/moves/MoverStatus.hh"
#include "../src/protocols/moves/MutateResidue.fwd.hh"
#include "../src/protocols/moves/MutateResidue.hh"
#include "../src/protocols/moves/MutateResidueCreator.hh"
#include "../src/protocols/moves/NullMover.fwd.hh"
#include "../src/protocols/moves/NullMover.hh"
#include "../src/protocols/moves/OutputMovers.fwd.hh"
#include "../src/protocols/moves/OutputMovers.hh"
#include "../src/protocols/moves/PackRotamersMover.fwd.hh"
#include "../src/protocols/moves/PackRotamersMover.hh"
#include "../src/protocols/moves/PackRotamersMoverCreator.hh"
#include "../src/protocols/moves/PackStatMover.hh"
#include "../src/protocols/moves/PeptideStapleMover.fwd.hh"
#include "../src/protocols/moves/PeptideStapleMover.hh"
#include "../src/protocols/moves/PoseMembraneRigidBodyMover.hh"
#include "../src/protocols/moves/ProlineFixMover.fwd.hh"
#include "../src/protocols/moves/ProlineFixMover.hh"
#include "../src/protocols/moves/PyMolMover.fwd.hh"
#include "../src/protocols/moves/PyMolMover.hh"
#include "../src/protocols/moves/RampingMover.fwd.hh"
#include "../src/protocols/moves/RampingMover.hh"
#include "../src/protocols/moves/RepeatMover.fwd.hh"
#include "../src/protocols/moves/RepeatMover.hh"
#include "../src/protocols/moves/ReplicaExchangeMC.fwd.hh"
#include "../src/protocols/moves/ReplicaExchangeMC.hh"
#include "../src/protocols/moves/ReportToDB.fwd.hh"
#include "../src/protocols/moves/ReportToDB.hh"
#include "../src/protocols/moves/ReportToDBCreator.hh"
#include "../src/protocols/moves/ResId.fwd.hh"
#include "../src/protocols/moves/ResId.hh"
#include "../src/protocols/moves/ReturnSidechainMover.fwd.hh"
#include "../src/protocols/moves/ReturnSidechainMover.hh"
#include "../src/protocols/moves/rigid_body_moves.hh"
#include "../src/protocols/moves/RigidBodyMover.fwd.hh"
#include "../src/protocols/moves/RigidBodyMover.hh"
#include "../src/protocols/moves/RollMover.fwd.hh"
#include "../src/protocols/moves/RollMover.hh"
#include "../src/protocols/moves/RotamerRecoveryMover.fwd.hh"
#include "../src/protocols/moves/RotamerRecoveryMover.hh"
#include "../src/protocols/moves/RotamerTrialsMinMover.fwd.hh"
#include "../src/protocols/moves/RotamerTrialsMinMover.hh"
#include "../src/protocols/moves/RotamerTrialsMinMoverCreator.hh"
#include "../src/protocols/moves/RotamerTrialsMover.fwd.hh"
#include "../src/protocols/moves/RotamerTrialsMover.hh"
#include "../src/protocols/moves/RotateJumpAxisMover.fwd.hh"
#include "../src/protocols/moves/RotateJumpAxisMover.hh"
#include "../src/protocols/moves/ScoreMover.fwd.hh"
#include "../src/protocols/moves/ScoreMover.hh"
#include "../src/protocols/moves/ScoreMoverCreator.hh"
#include "../src/protocols/moves/SetReturningPackRotamersMover.fwd.hh"
#include "../src/protocols/moves/SetReturningPackRotamersMover.hh"
#include "../src/protocols/moves/ShakeStructureMover.fwd.hh"
#include "../src/protocols/moves/ShakeStructureMover.hh"
#include "../src/protocols/moves/SidechainMCMover.fwd.hh"
#include "../src/protocols/moves/SidechainMCMover.hh"
#include "../src/protocols/moves/SidechainMCMoverCreator.hh"
#include "../src/protocols/moves/SidechainMover.fwd.hh"
#include "../src/protocols/moves/SidechainMover.hh"
#include "../src/protocols/moves/SidechainMoverCreator.hh"
#include "../src/protocols/moves/StructureRestrictor.fwd.hh"
#include "../src/protocols/moves/StructureRestrictor.hh"
#include "../src/protocols/moves/SuperimposeMover.fwd.hh"
#include "../src/protocols/moves/SuperimposeMover.hh"
#include "../src/protocols/moves/SwitchResidueTypeSetMover.fwd.hh"
#include "../src/protocols/moves/SwitchResidueTypeSetMover.hh"
#include "../src/protocols/moves/SwitchResidueTypeSetMoverCreator.hh"
#include "../src/protocols/moves/symmetry/fibril_util.hh"
#include "../src/protocols/moves/symmetry/SetupForFibrilMover.fwd.hh"
#include "../src/protocols/moves/symmetry/SetupForFibrilMover.hh"
#include "../src/protocols/moves/symmetry/SetupForSymmetryMover.fwd.hh"
#include "../src/protocols/moves/symmetry/SetupForSymmetryMover.hh"
#include "../src/protocols/moves/symmetry/SymFoldandDockMoveRbJumpMover.fwd.hh"
#include "../src/protocols/moves/symmetry/SymFoldandDockMoveRbJumpMover.hh"
#include "../src/protocols/moves/symmetry/SymFoldandDockRbTrialMover.fwd.hh"
#include "../src/protocols/moves/symmetry/SymFoldandDockRbTrialMover.hh"
#include "../src/protocols/moves/symmetry/SymFoldandDockSlideTrialMover.fwd.hh"
#include "../src/protocols/moves/symmetry/SymFoldandDockSlideTrialMover.hh"
#include "../src/protocols/moves/symmetry/SymmetricRMSMover.fwd.hh"
#include "../src/protocols/moves/symmetry/SymmetricRMSMover.hh"
#include "../src/protocols/moves/symmetry/SymMinMover.fwd.hh"
#include "../src/protocols/moves/symmetry/SymMinMover.hh"
#include "../src/protocols/moves/symmetry/SymPackRotamersMover.fwd.hh"
#include "../src/protocols/moves/symmetry/SymPackRotamersMover.hh"
#include "../src/protocols/moves/symmetry/SymRotamerTrialsMover.fwd.hh"
#include "../src/protocols/moves/symmetry/SymRotamerTrialsMover.hh"
#include "../src/protocols/moves/symmetry/SymShakeStructureMover.fwd.hh"
#include "../src/protocols/moves/symmetry/SymShakeStructureMover.hh"
#include "../src/protocols/moves/TailsScoreMover.hh"
#include "../src/protocols/moves/TaskAwareMinMover.fwd.hh"
#include "../src/protocols/moves/TaskAwareMinMover.hh"
#include "../src/protocols/moves/TaskAwareMinMoverCreator.hh"
#include "../src/protocols/moves/ThermodynamicMover.fwd.hh"
#include "../src/protocols/moves/ThermodynamicMover.hh"
#include "../src/protocols/moves/TorsionDOFMover.fwd.hh"
#include "../src/protocols/moves/TorsionDOFMover.hh"
#include "../src/protocols/moves/TrajectoryRecorder.fwd.hh"
#include "../src/protocols/moves/TrajectoryRecorder.hh"
#include "../src/protocols/moves/TrialMover.fwd.hh"
#include "../src/protocols/moves/TrialMover.hh"
#include "../src/protocols/moves/WhileMover.fwd.hh"
#include "../src/protocols/moves/WhileMover.hh"
#include "../src/protocols/moves/WobbleMover.hh"
#include "../src/protocols/MultiResolutionProtocol.hh"
#include "../src/protocols/multistate_design/MetricCalculatorFitnessFunction.fwd.hh"
#include "../src/protocols/multistate_design/MetricCalculatorFitnessFunction.hh"
#include "../src/protocols/multistate_design/MultiStateAggregateFunction.fwd.hh"
#include "../src/protocols/multistate_design/MultiStateAggregateFunction.hh"
#include "../src/protocols/multistate_design/MultiStateEntity.fwd.hh"
#include "../src/protocols/multistate_design/MultiStateEntity.hh"
#include "../src/protocols/multistate_design/MultiStateFitnessFunction.fwd.hh"
#include "../src/protocols/multistate_design/MultiStateFitnessFunction.hh"
#include "../src/protocols/multistate_design/MultiStatePacker.fwd.hh"
#include "../src/protocols/multistate_design/MultiStatePacker.hh"
#include "../src/protocols/multistate_design/PackingState.fwd.hh"
#include "../src/protocols/multistate_design/PackingState.hh"
#include "../src/protocols/multistate_design/PartitionAggregateFunction.fwd.hh"
#include "../src/protocols/multistate_design/PartitionAggregateFunction.hh"
#include "../src/protocols/multistate_design/SingleState.fwd.hh"
#include "../src/protocols/multistate_design/SingleState.hh"
#include "../src/protocols/multistate_design/SingleStateEntityData.fwd.hh"
#include "../src/protocols/multistate_design/SingleStateEntityData.hh"
#include "../src/protocols/multistate_design/SingleStateFitnessFunction.fwd.hh"
#include "../src/protocols/multistate_design/SingleStateFitnessFunction.hh"
#include "../src/protocols/multistate_design/util.hh"
#include "../src/protocols/NoesyAssign/Assignment.fwd.hh"
#include "../src/protocols/NoesyAssign/Assignment.hh"
#include "../src/protocols/NoesyAssign/CrossPeak.fwd.hh"
#include "../src/protocols/NoesyAssign/CrossPeak.hh"
#include "../src/protocols/NoesyAssign/CrossPeakInfo.fwd.hh"
#include "../src/protocols/NoesyAssign/CrossPeakInfo.hh"
#include "../src/protocols/NoesyAssign/CrossPeakList.fwd.hh"
#include "../src/protocols/NoesyAssign/CrossPeakList.hh"
#include "../src/protocols/NoesyAssign/CrossPeakList.impl.hh"
#include "../src/protocols/NoesyAssign/CyanaModul.hh"
#include "../src/protocols/NoesyAssign/CyanaModule.hh"
#include "../src/protocols/NoesyAssign/DistanceScoreMover.fwd.hh"
#include "../src/protocols/NoesyAssign/DistanceScoreMover.hh"
#include "../src/protocols/NoesyAssign/Exceptions.hh"
#include "../src/protocols/NoesyAssign/NoesyModule.fwd.hh"
#include "../src/protocols/NoesyAssign/NoesyModule.hh"
#include "../src/protocols/NoesyAssign/NoesyModule.impl.hh"
#include "../src/protocols/NoesyAssign/PeakAssignment.fwd.hh"
#include "../src/protocols/NoesyAssign/PeakAssignment.hh"
#include "../src/protocols/NoesyAssign/PeakAssignmentList.fwd.hh"
#include "../src/protocols/NoesyAssign/PeakAssignmentList.hh"
#include "../src/protocols/NoesyAssign/PeakAssignmentParameters.hh"
#include "../src/protocols/NoesyAssign/PeakCalibrator.hh"
#include "../src/protocols/NoesyAssign/PeakFileFormat.fwd.hh"
#include "../src/protocols/NoesyAssign/PeakFileFormat.hh"
#include "../src/protocols/NoesyAssign/Resonance.hh"
#include "../src/protocols/NoesyAssign/ResonanceList.fwd.hh"
#include "../src/protocols/NoesyAssign/ResonanceList.hh"
#include "../src/protocols/NoesyAssign/util.hh"
#include "../src/protocols/optimize_weights/Arithmetic.fwd.hh"
#include "../src/protocols/optimize_weights/Arithmetic.hh"
#include "../src/protocols/optimize_weights/DDGBindOptEData.fwd.hh"
#include "../src/protocols/optimize_weights/DDGBindOptEData.hh"
#include "../src/protocols/optimize_weights/DGBindOptEData.fwd.hh"
#include "../src/protocols/optimize_weights/DGBindOptEData.hh"
#include "../src/protocols/optimize_weights/IterativeOptEDriver.fwd.hh"
#include "../src/protocols/optimize_weights/IterativeOptEDriver.hh"
#include "../src/protocols/optimize_weights/NestedEnergyTermOptEData.fwd.hh"
#include "../src/protocols/optimize_weights/NestedEnergyTermOptEData.hh"
#include "../src/protocols/optimize_weights/OptEData.fwd.hh"
#include "../src/protocols/optimize_weights/OptEData.hh"
#include "../src/protocols/optimize_weights/OptEMultifunc.fwd.hh"
#include "../src/protocols/optimize_weights/OptEMultifunc.hh"
#include "../src/protocols/optimize_weights/PNatLigPoseOptEData.fwd.hh"
#include "../src/protocols/optimize_weights/PNatLigPoseOptEData.hh"
#include "../src/protocols/ProteinInterfaceDesign/design_utils.hh"
#include "../src/protocols/ProteinInterfaceDesign/dock_design_filters.hh"
#include "../src/protocols/ProteinInterfaceDesign/DockDesign.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/DockDesign.hh"
#include "../src/protocols/ProteinInterfaceDesign/DockDesignCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/DockDesignFilterFactory.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/DockDesignFilterFactory.hh"
#include "../src/protocols/ProteinInterfaceDesign/filters/DesignableResiduesFilter.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/filters/DesignableResiduesFilter.hh"
#include "../src/protocols/ProteinInterfaceDesign/filters/DisulfideFilter.hh"
#include "../src/protocols/ProteinInterfaceDesign/filters/InterfaceHolesFilter.hh"
#include "../src/protocols/ProteinInterfaceDesign/filters/RmsdFilter.hh"
#include "../src/protocols/ProteinInterfaceDesign/filters/RotamerBoltzmannWeight.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/filters/RotamerBoltzmannWeight.hh"
#include "../src/protocols/ProteinInterfaceDesign/filters/SequenceRecoveryFilter.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/filters/SequenceRecoveryFilter.hh"
#include "../src/protocols/ProteinInterfaceDesign/filters/StubScoreFilter.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/filters/StubScoreFilter.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/BackrubDDMover.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/BackrubDDMoverCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/BestHotspotCstMover.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/BestHotspotCstMoverCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/BuildAlaPose.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/BuildAlaPose.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/BuildAlaPoseCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/ddG.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/ddG.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/DesignMinimizeHbonds.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/DesignMinimizeHbondsCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/DesignRepackMover.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/DesignRepackMover.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/DisulfideMover.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/DisulfideMoverCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/DockAndRetrieveSidechains.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/DockAndRetrieveSidechainsCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/DomainAssembly.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/DomainAssemblyCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/DumpPdb.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/DumpPdbCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/FavorNativeResiduePreCycle.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/HotspotHasherMover.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/HotspotHasherMoverCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/InterfaceRecapitulationMover.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/InterfaceRecapitulationMoverCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/LoopFinder.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/LoopFinderCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/LoopOver.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/LoopOverCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/LoopRemodel.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/LoopRemodel.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/LoopRemodelCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/MapHotspot.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/MapHotspotCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/NullDesignMover.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PeptideStapleDesignMover.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PeptideStapleDesignMoverCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PlacementAuctionMover.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PlacementAuctionMover.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PlacementAuctionMoverCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PlacementMinimizationMover.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PlacementMinimizationMover.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PlacementMinimizationMoverCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PlaceOnLoop.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PlaceOnLoop.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PlaceOnLoopCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PlaceSimultaneouslyMover.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PlaceSimultaneouslyMoverCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PlaceStubMover.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PlaceStubMover.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PlaceStubMoverCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PlaceUtils.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PrepackMover.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/PrepackMoverCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/ProteinInterfaceMultiStateDesignMover.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/ProteinInterfaceMultiStateDesignMover.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/ProteinInterfaceMultiStateDesignMoverCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/RandomMutation.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/RandomMutationCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/RepackMinimize.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/RepackMinimizeCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/SaveAndRetrieveSidechains.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/SaveAndRetrieveSidechains.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/SaveAndRetrieveSidechainsCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/SetAtomTree.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/SetAtomTreeCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/SetupHotspotConstraintsMover.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/SpinMover.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/SpinMoverCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/SubroutineMover.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/SubroutineMover.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/SubroutineMoverCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/TryRotamers.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/TryRotamersCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/VLB.hh"
#include "../src/protocols/ProteinInterfaceDesign/movers/VLBCreator.hh"
#include "../src/protocols/ProteinInterfaceDesign/ParserJobInputter.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/ParserJobInputter.hh"
#include "../src/protocols/ProteinInterfaceDesign/read_patchdock.hh"
#include "../src/protocols/ProteinInterfaceDesign/ReportPSSMDifference.fwd.hh"
#include "../src/protocols/ProteinInterfaceDesign/ReportPSSMDifference.hh"
#include "../src/protocols/ProteinInterfaceDesign/util.hh"
#include "../src/protocols/Protocol.fwd.hh"
#include "../src/protocols/Protocol.hh"
#include "../src/protocols/qsar/qsarMap.fwd.hh"
#include "../src/protocols/qsar/qsarMap.hh"
#include "../src/protocols/qsar/qsarMover.fwd.hh"
#include "../src/protocols/qsar/qsarMover.hh"
#include "../src/protocols/qsar/qsarTypeManager.fwd.hh"
#include "../src/protocols/qsar/qsarTypeManager.hh"
#include "../src/protocols/qsar/scoring_grid/AtrGrid.fwd.hh"
#include "../src/protocols/qsar/scoring_grid/AtrGrid.hh"
#include "../src/protocols/qsar/scoring_grid/GridBase.fwd.hh"
#include "../src/protocols/qsar/scoring_grid/GridBase.hh"
#include "../src/protocols/qsar/scoring_grid/GridManager.fwd.hh"
#include "../src/protocols/qsar/scoring_grid/GridManager.hh"
#include "../src/protocols/qsar/scoring_grid/HbaGrid.fwd.hh"
#include "../src/protocols/qsar/scoring_grid/HbaGrid.hh"
#include "../src/protocols/qsar/scoring_grid/HbdGrid.fwd.hh"
#include "../src/protocols/qsar/scoring_grid/HbdGrid.hh"
#include "../src/protocols/qsar/scoring_grid/polarizGrid.fwd.hh"
#include "../src/protocols/qsar/scoring_grid/polarizGrid.hh"
#include "../src/protocols/qsar/scoring_grid/RepGrid.fwd.hh"
#include "../src/protocols/qsar/scoring_grid/RepGrid.hh"
#include "../src/protocols/RBSegmentMoves/AutoRBRelaxMover.hh"
#include "../src/protocols/RBSegmentMoves/FragInsertAndAlignMover.hh"
#include "../src/protocols/RBSegmentMoves/RBSegment.fwd.hh"
#include "../src/protocols/RBSegmentMoves/RBSegment.hh"
#include "../src/protocols/RBSegmentMoves/RBSegmentMover.hh"
#include "../src/protocols/RBSegmentMoves/RBSegmentRelax.hh"
#include "../src/protocols/RBSegmentMoves/RBSegmentRelax_main.hh"
#include "../src/protocols/RBSegmentMoves/RMSVallData.hh"
#include "../src/protocols/RBSegmentMoves/util.hh"
#include "../src/protocols/relax/ClassicRelax.hh"
#include "../src/protocols/relax/cst_util.hh"
#include "../src/protocols/relax/MiniRelax.fwd.hh"
#include "../src/protocols/relax/MiniRelax.hh"
#include "../src/protocols/relax/Ramady.hh"
#include "../src/protocols/relax/relax_main.hh"
#include "../src/protocols/relax/RelaxProtocolBase.fwd.hh"
#include "../src/protocols/relax/RelaxProtocolBase.hh"
#include "../src/protocols/relax/FastRelax.hh"
#include "../src/protocols/relax/util.hh"
#include "../src/protocols/relax_protocols.hh"
#include "../src/protocols/rna/RNA_BasePairClassifier.hh"
#include "../src/protocols/rna/RNA_ChunkLibrary.fwd.hh"
#include "../src/protocols/rna/RNA_ChunkLibrary.hh"
#include "../src/protocols/rna/RNA_DataReader.fwd.hh"
#include "../src/protocols/rna/RNA_DataReader.hh"
#include "../src/protocols/rna/RNA_DeNovoProtocol.hh"
#include "../src/protocols/rna/RNA_FragmentMover.fwd.hh"
#include "../src/protocols/rna/RNA_FragmentMover.hh"
#include "../src/protocols/rna/rna_fragments_classes.fwd.hh"
#include "../src/protocols/rna/RNA_FragmentsClasses.fwd.hh"
#include "../src/protocols/rna/RNA_FragmentsClasses.hh"
#include "../src/protocols/rna/RNA_HelixAssembler.fwd.hh"
#include "../src/protocols/rna/RNA_HelixAssembler.hh"
#include "../src/protocols/rna/RNA_JumpLibrary.hh"
#include "../src/protocols/rna/RNA_LoopCloser.fwd.hh"
#include "../src/protocols/rna/RNA_LoopCloser.hh"
#include "../src/protocols/rna/RNA_Minimizer.fwd.hh"
#include "../src/protocols/rna/RNA_Minimizer.hh"
#include "../src/protocols/rna/RNA_ProtocolUtil.hh"
#include "../src/protocols/rna/RNA_Relaxer.fwd.hh"
#include "../src/protocols/rna/RNA_Relaxer.hh"
#include "../src/protocols/rna/RNA_SecStructInfo.fwd.hh"
#include "../src/protocols/rna/RNA_SecStructInfo.hh"
#include "../src/protocols/rna/RNA_StructureParameters.fwd.hh"
#include "../src/protocols/rna/RNA_StructureParameters.hh"
#include "../src/protocols/RosettaScripts/util.hh"
#include "../src/protocols/ScoreMap.hh"
#include "../src/protocols/scoring/methods/ResidualDipolarCouplingEnergyRigidSegments.fwd.hh"
#include "../src/protocols/scoring/methods/ResidualDipolarCouplingEnergyRigidSegments.hh"
#include "../src/protocols/scoring/methods/ResidualDipolarCouplingEnergyRigidSegmentsCreator.hh"
#include "../src/protocols/scoring/ResidualDipolarCouplingRigidSegments.fwd.hh"
#include "../src/protocols/scoring/ResidualDipolarCouplingRigidSegments.hh"
#include "../src/protocols/smanager/smanager.hh"
#include "../src/protocols/sparta/ANN.hh"
#include "../src/protocols/sparta/GDB.hh"
#include "../src/protocols/sparta/PDB.hh"
#include "../src/protocols/sparta/Sparta.hh"
#include "../src/protocols/sparta/util.hh"
#include "../src/protocols/swa/MainChainTorsionClasses.hh"
#include "../src/protocols/swa/MainChainTorsionSet.hh"
#include "../src/protocols/swa/rna/StepWiseResidueSampler.hh"
#include "../src/protocols/swa/rna/StepWiseRNA_BaseCentroidScreener.fwd.hh"
#include "../src/protocols/swa/rna/StepWiseRNA_BaseCentroidScreener.hh"
#include "../src/protocols/swa/rna/StepWiseRNA_Classes.hh"
#include "../src/protocols/swa/rna/StepWiseRNA_Clusterer.hh"
#include "../src/protocols/swa/rna/StepWiseRNA_JobParameters.fwd.hh"
#include "../src/protocols/swa/rna/StepWiseRNA_JobParameters.hh"
#include "../src/protocols/swa/rna/StepWiseRNA_Minimizer.hh"
#include "../src/protocols/swa/rna/StepWiseRNA_PoseSetup.hh"
#include "../src/protocols/swa/rna/StepWiseRNA_ResidueInfo.hh"
#include "../src/protocols/swa/rna/StepWiseRNA_ResidueSampler.hh"
#include "../src/protocols/swa/rna/StepWiseRNA_RotamerGenerator.fwd.hh"
#include "../src/protocols/swa/rna/StepWiseRNA_RotamerGenerator.hh"
#include "../src/protocols/swa/rna/StepWiseRNA_Util.hh"
#include "../src/protocols/swa/StepWise.fwd.hh"
#include "../src/protocols/swa/StepWiseClusterer.hh"
#include "../src/protocols/swa/StepWiseFilterer.hh"
#include "../src/protocols/swa/StepWisePoseMinimizer.hh"
#include "../src/protocols/swa/StepWisePoseSetup.hh"
#include "../src/protocols/swa/StepWiseResidueSampler.hh"
#include "../src/protocols/swa/StepWiseScreener.hh"
#include "../src/protocols/swa/StepWiseUtil.hh"
#include "../src/protocols/symmetric_docking/SymDockBaseProtocol.hh"
#include "../src/protocols/symmetric_docking/SymDockingHiRes.fwd.hh"
#include "../src/protocols/symmetric_docking/SymDockingHiRes.hh"
#include "../src/protocols/symmetric_docking/SymDockingInitialPerturbation.hh"
#include "../src/protocols/symmetric_docking/SymDockingLowRes.fwd.hh"
#include "../src/protocols/symmetric_docking/SymDockingLowRes.hh"
#include "../src/protocols/symmetric_docking/SymDockProtocol.fwd.hh"
#include "../src/protocols/symmetric_docking/SymDockProtocol.hh"
#include "../src/protocols/symmetric_docking/SymRestrictTaskForDocking.fwd.hh"
#include "../src/protocols/symmetric_docking/SymRestrictTaskForDocking.hh"
#include "../src/protocols/symmetric_docking/SymSidechainMinMover.fwd.hh"
#include "../src/protocols/symmetric_docking/SymSidechainMinMover.hh"
#include "../src/protocols/toolbox/Cluster.hh"
#include "../src/protocols/toolbox/Cluster.impl.hh"
#include "../src/protocols/toolbox/DecoySetEvaluation.fwd.hh"
#include "../src/protocols/toolbox/DecoySetEvaluation.hh"
#include "../src/protocols/toolbox/IGEdgeReweighters.hh"
#include "../src/protocols/toolbox/InteratomicVarianceMatrix.hh"
#include "../src/protocols/toolbox/KCluster.fwd.hh"
#include "../src/protocols/toolbox/KCluster.hh"
#include "../src/protocols/toolbox/pose_manipulation.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/BuriedUnsatisfiedPolarsCalculator.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/ClashCountCalculator.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/DecomposeAndReweightEnergiesCalculator.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/HPatchCalculator.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/InterfaceDefinitionCalculatorBase.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/InterfaceDeltaEnergeticsCalculator.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/InterfaceNeighborDefinitionCalculator.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/InterfaceSasaDefinitionCalculator.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/InterGroupNeighborsCalculator.fwd.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/InterGroupNeighborsCalculator.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/MetricValueGetter.fwd.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/MetricValueGetter.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/NcontactsCalculator.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/NeighborhoodByDistanceCalculator.fwd.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/NeighborhoodByDistanceCalculator.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/NeighborsByDistanceCalculator.fwd.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/NeighborsByDistanceCalculator.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/NonlocalContactsCalculator.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/NumberHBondsCalculator.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/PackstatCalculator.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/ResidueDecompositionByChainCalculator.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/ResidueDecompositionCalculator.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/SasaCalculator.hh"
#include "../src/protocols/toolbox/PoseMetricCalculators/SurfaceCalculator.hh"
#include "../src/protocols/toolbox/RotamerSetOperations/RigidBodyMoveRotSetOps.fwd.hh"
#include "../src/protocols/toolbox/RotamerSetOperations/RigidBodyMoveRotSetOps.hh"
#include "../src/protocols/toolbox/superimpose.hh"
#include "../src/protocols/toolbox/TaskOperations/DesignAroundOperation.fwd.hh"
#include "../src/protocols/toolbox/TaskOperations/DesignAroundOperation.hh"
#include "../src/protocols/toolbox/TaskOperations/DesignAroundOperationCreator.hh"
#include "../src/protocols/toolbox/TaskOperations/PreventChainFromRepackingOperation.fwd.hh"
#include "../src/protocols/toolbox/TaskOperations/PreventChainFromRepackingOperation.hh"
#include "../src/protocols/toolbox/TaskOperations/PreventChainFromRepackingOperationCreator.hh"
#include "../src/protocols/toolbox/TaskOperations/ProteinInterfaceDesignOperation.fwd.hh"
#include "../src/protocols/toolbox/TaskOperations/ProteinInterfaceDesignOperation.hh"
#include "../src/protocols/toolbox/TaskOperations/ProteinInterfaceDesignOperationCreator.hh"
#include "../src/protocols/toolbox/TaskOperations/RestrictByCalculatorsOperation.fwd.hh"
#include "../src/protocols/toolbox/TaskOperations/RestrictByCalculatorsOperation.hh"
#include "../src/protocols/toolbox/TaskOperations/RestrictByCalculatorsOperationCreator.hh"
#include "../src/protocols/toolbox/TaskOperations/RestrictChainToRepackingOperation.fwd.hh"
#include "../src/protocols/toolbox/TaskOperations/RestrictChainToRepackingOperation.hh"
#include "../src/protocols/toolbox/TaskOperations/RestrictChainToRepackingOperationCreator.hh"
#include "../src/protocols/toolbox/TaskOperations/RestrictNonSurfaceToRepackingOperation.fwd.hh"
#include "../src/protocols/toolbox/TaskOperations/RestrictNonSurfaceToRepackingOperation.hh"
#include "../src/protocols/toolbox/TaskOperations/RestrictNonSurfaceToRepackingOperationCreator.hh"
#include "../src/protocols/toolbox/TaskOperations/RestrictOperationsBase.fwd.hh"
#include "../src/protocols/toolbox/TaskOperations/RestrictOperationsBase.hh"
#include "../src/protocols/toolbox/TaskOperations/RestrictToInterfaceOperation.fwd.hh"
#include "../src/protocols/toolbox/TaskOperations/RestrictToInterfaceOperation.hh"
#include "../src/protocols/toolbox/TaskOperations/RestrictToInterfaceOperationCreator.hh"
#include "../src/protocols/toolbox/TaskOperations/RestrictToNeighborhoodOperation.fwd.hh"
#include "../src/protocols/toolbox/TaskOperations/RestrictToNeighborhoodOperation.hh"
#include "../src/protocols/toolbox/TaskOperations/RestrictToNeighborhoodOperationCreator.hh"
#include "../src/protocols/toolbox/TaskOperations/ThreadSequenceOperation.fwd.hh"
#include "../src/protocols/toolbox/TaskOperations/ThreadSequenceOperation.hh"
#include "../src/protocols/toolbox/TaskOperations/ThreadSequenceOperationCreator.hh"
#include "../src/protocols/topology_broker/AsymFoldandDockClaimer.fwd.hh"
#include "../src/protocols/topology_broker/AsymFoldandDockClaimer.hh"
#include "../src/protocols/topology_broker/ClaimerMessage.fwd.hh"
#include "../src/protocols/topology_broker/ClaimerMessage.hh"
#include "../src/protocols/topology_broker/ConstraintClaimer.fwd.hh"
#include "../src/protocols/topology_broker/ConstraintClaimer.hh"
#include "../src/protocols/topology_broker/CoordConstraintClaimer.fwd.hh"
#include "../src/protocols/topology_broker/CoordConstraintClaimer.hh"
#include "../src/protocols/topology_broker/CutBiasClaimer.fwd.hh"
#include "../src/protocols/topology_broker/CutBiasClaimer.hh"
#include "../src/protocols/topology_broker/DensityScoringClaimer.fwd.hh"
#include "../src/protocols/topology_broker/DensityScoringClaimer.hh"
#include "../src/protocols/topology_broker/DisulfJumpClaimer.fwd.hh"
#include "../src/protocols/topology_broker/DisulfJumpClaimer.hh"
#include "../src/protocols/topology_broker/DofClaim.fwd.hh"
#include "../src/protocols/topology_broker/DofClaim.hh"
#include "../src/protocols/topology_broker/Exceptions.hh"
#include "../src/protocols/topology_broker/FibrilModelingClaimer.fwd.hh"
#include "../src/protocols/topology_broker/FibrilModelingClaimer.hh"
#include "../src/protocols/topology_broker/FoldandDockClaimer.fwd.hh"
#include "../src/protocols/topology_broker/FoldandDockClaimer.hh"
#include "../src/protocols/topology_broker/FragmentClaimer.fwd.hh"
#include "../src/protocols/topology_broker/FragmentClaimer.hh"
#include "../src/protocols/topology_broker/JumpClaimer.fwd.hh"
#include "../src/protocols/topology_broker/JumpClaimer.hh"
#include "../src/protocols/topology_broker/LoopFragmentClaimer.fwd.hh"
#include "../src/protocols/topology_broker/LoopFragmentClaimer.hh"
#include "../src/protocols/topology_broker/MembraneTopologyClaimer.hh"
#include "../src/protocols/topology_broker/MetalloClaimer.fwd.hh"
#include "../src/protocols/topology_broker/MetalloClaimer.hh"
#include "../src/protocols/topology_broker/PcsEnergyController.fwd.hh"
#include "../src/protocols/topology_broker/PcsEnergyController.hh"
#include "../src/protocols/topology_broker/PseudocontactShiftEnergyController.fwd.hh"
#include "../src/protocols/topology_broker/PseudocontactShiftEnergyController.hh"
#include "../src/protocols/topology_broker/RigidChunkClaimer.fwd.hh"
#include "../src/protocols/topology_broker/RigidChunkClaimer.hh"
#include "../src/protocols/topology_broker/SequenceClaimer.fwd.hh"
#include "../src/protocols/topology_broker/SequenceClaimer.hh"
#include "../src/protocols/topology_broker/StartStructClaimer.fwd.hh"
#include "../src/protocols/topology_broker/StartStructClaimer.hh"
#include "../src/protocols/topology_broker/TemplateFragmentClaimer.fwd.hh"
#include "../src/protocols/topology_broker/TemplateFragmentClaimer.hh"
#include "../src/protocols/topology_broker/TemplateJumpClaimer.fwd.hh"
#include "../src/protocols/topology_broker/TemplateJumpClaimer.hh"
#include "../src/protocols/topology_broker/TopologyBroker.fwd.hh"
#include "../src/protocols/topology_broker/TopologyBroker.hh"
#include "../src/protocols/topology_broker/TopologyClaimer.fwd.hh"
#include "../src/protocols/topology_broker/TopologyClaimer.hh"
#include "../src/protocols/topology_broker/TopologyClaimerFactory.hh"
#include "../src/protocols/topology_broker/util.hh"
#include "../src/protocols/topology_broker/weights/AbinitioMoverWeight.hh"
#include "../src/protocols/topology_broker/weights/all.hh"
#include "../src/protocols/topology_broker/weights/ConstAbinitioMoverWeight.hh"
#include "../src/protocols/topology_broker/weights/LargeFragWeight.hh"
#include "../src/protocols/topology_broker/weights/SmallFragWeight.hh"
#include "../src/protocols/topology_broker/weights/SmoothFragWeight.hh"
#include "../src/protocols/viewer/ConformationViewer.fwd.hh"
#include "../src/protocols/viewer/ConformationViewer.hh"
#include "../src/protocols/viewer/GraphicsState.hh"
#include "../src/protocols/viewer/marchingCubes.hh"
#include "../src/protocols/viewer/SilentObserver.fwd.hh"
#include "../src/protocols/viewer/SilentObserver.hh"
#include "../src/protocols/viewer/triangle.hh"
#include "../src/protocols/viewer/triangleIterator.hh"
#include "../src/protocols/viewer/viewers.hh"
#include "../src/protocols/wum/MPI_Relax.hh"
#include "../src/protocols/wum/MPI_WorkUnitManager.fwd.hh"
#include "../src/protocols/wum/MPI_WorkUnitManager.hh"
#include "../src/protocols/wum/SilentStructStore.fwd.hh"
#include "../src/protocols/wum/SilentStructStore.hh"
#include "../src/protocols/wum/WorkUnitBase.fwd.hh"
#include "../src/protocols/wum/WorkUnitBase.hh"
#include "../src/protocols/wum/WorkUnitList.hh"
#include "../src/protocols/wum/WorkUnitManager.fwd.hh"
#include "../src/protocols/wum/WorkUnitManager.hh"
#include "../src/utility/all.fwd.hh"
#include "../src/utility/all.hh"
#include "../src/utility/assert.hh"
#include "../src/utility/basic_sys_util.hh"
#include "../src/utility/BitSet.fwd.hh"
#include "../src/utility/BitSet.hh"
#include "../src/utility/BitVector.fwd.hh"
#include "../src/utility/BitVector.hh"
#include "../src/utility/boinc/boinc_util.hh"
#include "../src/utility/Bound.fwd.hh"
#include "../src/utility/Bound.hh"
#include "../src/utility/DereferenceIterator.hh"
#include "../src/utility/down_cast.hh"
#include "../src/utility/excn/Exceptions.hh"
#include "../src/utility/excn/EXCN_Base.hh"
#include "../src/utility/exit.hh"
#include "../src/utility/factory/Factory.fwd.hh"
#include "../src/utility/factory/Factory.hh"
#include "../src/utility/factory/Registrant.fwd.hh"
#include "../src/utility/factory/Registrant.hh"
#include "../src/utility/factory/WidgetFactory.fwd.hh"
#include "../src/utility/factory/WidgetFactory.hh"
#include "../src/utility/factory/WidgetRegistrator.hh"
#include "../src/utility/file/file_sys_util.hh"
#include "../src/utility/file/FileName.fwd.hh"
#include "../src/utility/file/FileName.hh"
#include "../src/utility/file/gzip_util.hh"
#include "../src/utility/file/PathName.fwd.hh"
#include "../src/utility/file/PathName.hh"
#include "../src/utility/fix_boinc_read.hh"
#include "../src/utility/fixedsizearray1.fwd.hh"
#include "../src/utility/fixedsizearray1.hh"
#include "../src/utility/FixedSizeLexicographicalIterator.fwd.hh"
#include "../src/utility/FixedSizeLexicographicalIterator.hh"
#include "../src/utility/FixedSizeLexicographicalIterator.tmpl.hh"
#include "../src/utility/heap.fwd.hh"
#include "../src/utility/heap.hh"
#include "../src/utility/in_place_list.fwd.hh"
#include "../src/utility/in_place_list.hh"
#include "../src/utility/IndirectSorter.hh"
#include "../src/utility/integer_mapping.fwd.hh"
#include "../src/utility/integer_mapping.hh"
#include "../src/utility/io/all.fwd.hh"
#include "../src/utility/io/all.hh"
#include "../src/utility/io/icstream.fwd.hh"
#include "../src/utility/io/icstream.hh"
#include "../src/utility/io/irstream.fwd.hh"
#include "../src/utility/io/irstream.hh"
#include "../src/utility/io/izstream.fwd.hh"
#include "../src/utility/io/izstream.hh"
#include "../src/utility/io/mpistream.hh"
#include "../src/utility/io/ocstream.fwd.hh"
#include "../src/utility/io/ocstream.hh"
#include "../src/utility/io/orstream.fwd.hh"
#include "../src/utility/io/orstream.hh"
#include "../src/utility/io/ozstream.fwd.hh"
#include "../src/utility/io/ozstream.hh"
#include "../src/utility/io/util.hh"
#include "../src/utility/keys/all.fwd.hh"
#include "../src/utility/keys/all.hh"
#include "../src/utility/keys/AutoKey.fwd.hh"
#include "../src/utility/keys/AutoKey.hh"
#include "../src/utility/keys/ClassKeyMap.fwd.hh"
#include "../src/utility/keys/ClassKeyMap.hh"
#include "../src/utility/keys/ClassKeyVector.fwd.hh"
#include "../src/utility/keys/ClassKeyVector.hh"
#include "../src/utility/keys/Key.fwd.hh"
#include "../src/utility/keys/Key.hh"
#include "../src/utility/keys/Key2Tuple.fwd.hh"
#include "../src/utility/keys/Key2Tuple.hh"
#include "../src/utility/keys/Key2Vector.fwd.hh"
#include "../src/utility/keys/Key2Vector.hh"
#include "../src/utility/keys/Key3Tuple.fwd.hh"
#include "../src/utility/keys/Key3Tuple.hh"
#include "../src/utility/keys/Key3Vector.fwd.hh"
#include "../src/utility/keys/Key3Vector.hh"
#include "../src/utility/keys/Key4Tuple.fwd.hh"
#include "../src/utility/keys/Key4Tuple.hh"
#include "../src/utility/keys/Key4Vector.fwd.hh"
#include "../src/utility/keys/Key4Vector.hh"
#include "../src/utility/keys/KeyCount.fwd.hh"
#include "../src/utility/keys/KeyCount.hh"
#include "../src/utility/keys/KeyLess.fwd.hh"
#include "../src/utility/keys/KeyLess.hh"
#include "../src/utility/keys/KeyLookup.functors.hh"
#include "../src/utility/keys/KeyLookup.fwd.hh"
#include "../src/utility/keys/KeyLookup.hh"
#include "../src/utility/keys/KeyMapTraits.hh"
#include "../src/utility/keys/KeySetTraits.hh"
#include "../src/utility/keys/KeyVector.fwd.hh"
#include "../src/utility/keys/KeyVector.hh"
#include "../src/utility/keys/KeyVectorTraits.hh"
#include "../src/utility/keys/NoClient.fwd.hh"
#include "../src/utility/keys/NoClient.hh"
#include "../src/utility/keys/SmallKeyMap.fwd.hh"
#include "../src/utility/keys/SmallKeyMap.hh"
#include "../src/utility/keys/SmallKeyVector.fwd.hh"
#include "../src/utility/keys/SmallKeyVector.hh"
#include "../src/utility/keys/UserKey.fwd.hh"
#include "../src/utility/keys/UserKey.hh"
#include "../src/utility/keys/VariantKey.fwd.hh"
#include "../src/utility/keys/VariantKey.hh"
#include "../src/utility/LexicographicalIterator.fwd.hh"
#include "../src/utility/LexicographicalIterator.hh"
#include "../src/utility/mpi_util.hh"
#include "../src/utility/options/all.fwd.hh"
#include "../src/utility/options/all.hh"
#include "../src/utility/options/AnyOption.fwd.hh"
#include "../src/utility/options/AnyOption.hh"
#include "../src/utility/options/AnyVectorOption.fwd.hh"
#include "../src/utility/options/AnyVectorOption.hh"
#include "../src/utility/options/BooleanOption.fwd.hh"
#include "../src/utility/options/BooleanOption.hh"
#include "../src/utility/options/BooleanVectorOption.fwd.hh"
#include "../src/utility/options/BooleanVectorOption.hh"
#include "../src/utility/options/FileOption.fwd.hh"
#include "../src/utility/options/FileOption.hh"
#include "../src/utility/options/FileVectorOption.fwd.hh"
#include "../src/utility/options/FileVectorOption.hh"
#include "../src/utility/options/IntegerOption.fwd.hh"
#include "../src/utility/options/IntegerOption.hh"
#include "../src/utility/options/IntegerVectorOption.fwd.hh"
#include "../src/utility/options/IntegerVectorOption.hh"
#include "../src/utility/options/keys/all.fwd.hh"
#include "../src/utility/options/keys/all.hh"
#include "../src/utility/options/keys/AnyOptionKey.fwd.hh"
#include "../src/utility/options/keys/AnyOptionKey.hh"
#include "../src/utility/options/keys/AnyVectorOptionKey.fwd.hh"
#include "../src/utility/options/keys/AnyVectorOptionKey.hh"
#include "../src/utility/options/keys/BooleanOptionKey.fwd.hh"
#include "../src/utility/options/keys/BooleanOptionKey.hh"
#include "../src/utility/options/keys/BooleanVectorOptionKey.fwd.hh"
#include "../src/utility/options/keys/BooleanVectorOptionKey.hh"
#include "../src/utility/options/keys/FileOptionKey.fwd.hh"
#include "../src/utility/options/keys/FileOptionKey.hh"
#include "../src/utility/options/keys/FileVectorOptionKey.fwd.hh"
#include "../src/utility/options/keys/FileVectorOptionKey.hh"
#include "../src/utility/options/keys/IntegerOptionKey.fwd.hh"
#include "../src/utility/options/keys/IntegerOptionKey.hh"
#include "../src/utility/options/keys/IntegerVectorOptionKey.fwd.hh"
#include "../src/utility/options/keys/IntegerVectorOptionKey.hh"
#include "../src/utility/options/keys/OptionKey.fwd.hh"
#include "../src/utility/options/keys/OptionKey.hh"
#include "../src/utility/options/keys/OptionKeys.hh"
#include "../src/utility/options/keys/PathOptionKey.fwd.hh"
#include "../src/utility/options/keys/PathOptionKey.hh"
#include "../src/utility/options/keys/PathVectorOptionKey.fwd.hh"
#include "../src/utility/options/keys/PathVectorOptionKey.hh"
#include "../src/utility/options/keys/RealOptionKey.fwd.hh"
#include "../src/utility/options/keys/RealOptionKey.hh"
#include "../src/utility/options/keys/RealVectorOptionKey.fwd.hh"
#include "../src/utility/options/keys/RealVectorOptionKey.hh"
#include "../src/utility/options/keys/ScalarOptionKey.fwd.hh"
#include "../src/utility/options/keys/ScalarOptionKey.hh"
#include "../src/utility/options/keys/StringOptionKey.fwd.hh"
#include "../src/utility/options/keys/StringOptionKey.hh"
#include "../src/utility/options/keys/StringVectorOptionKey.fwd.hh"
#include "../src/utility/options/keys/StringVectorOptionKey.hh"
#include "../src/utility/options/keys/VectorOptionKey.fwd.hh"
#include "../src/utility/options/keys/VectorOptionKey.hh"
#include "../src/utility/options/mpi_stderr.hh"
#include "../src/utility/options/Option.fwd.hh"
#include "../src/utility/options/Option.hh"
#include "../src/utility/options/OptionCollection.fwd.hh"
#include "../src/utility/options/OptionCollection.hh"
#include "../src/utility/options/PathOption.fwd.hh"
#include "../src/utility/options/PathOption.hh"
#include "../src/utility/options/PathVectorOption.fwd.hh"
#include "../src/utility/options/PathVectorOption.hh"
#include "../src/utility/options/RealOption.fwd.hh"
#include "../src/utility/options/RealOption.hh"
#include "../src/utility/options/RealVectorOption.fwd.hh"
#include "../src/utility/options/RealVectorOption.hh"
#include "../src/utility/options/ScalarOption.fwd.hh"
#include "../src/utility/options/ScalarOption.hh"
#include "../src/utility/options/ScalarOption_T_.fwd.hh"
#include "../src/utility/options/ScalarOption_T_.hh"
#include "../src/utility/options/StringOption.fwd.hh"
#include "../src/utility/options/StringOption.hh"
#include "../src/utility/options/StringVectorOption.fwd.hh"
#include "../src/utility/options/StringVectorOption.hh"
#include "../src/utility/options/VariantOption.fwd.hh"
#include "../src/utility/options/VariantOption.hh"
#include "../src/utility/options/VectorOption.fwd.hh"
#include "../src/utility/options/VectorOption.hh"
#include "../src/utility/options/VectorOption_T_.fwd.hh"
#include "../src/utility/options/VectorOption_T_.hh"
#include "../src/utility/OrderedTuple.fwd.hh"
#include "../src/utility/OrderedTuple.hh"
#include "../src/utility/PeriodicSplineReader.fwd.hh"
#include "../src/utility/PeriodicSplineReader.hh"
#include "../src/utility/pointer/access_ptr.fwd.hh"
#include "../src/utility/pointer/access_ptr.hh"
#include "../src/utility/pointer/all.fwd.hh"
#include "../src/utility/pointer/all.hh"
#include "../src/utility/pointer/owning_ptr.functions.hh"
#include "../src/utility/pointer/owning_ptr.fwd.hh"
#include "../src/utility/pointer/owning_ptr.hh"
#include "../src/utility/pointer/pointer.functions.hh"
#include "../src/utility/pointer/ReferenceCount.fwd.hh"
#include "../src/utility/pointer/ReferenceCount.hh"
#include "../src/utility/pointer/ReferenceCountMI.fwd.hh"
#include "../src/utility/pointer/ReferenceCountMI.hh"
#include "../src/utility/pointer/ReferenceCountMI_.fwd.hh"
#include "../src/utility/pointer/ReferenceCountMI_.hh"
#include "../src/utility/PyAssert.hh"
#include "../src/utility/query/all.hh"
#include "../src/utility/query/Filter.hh"
#include "../src/utility/query/Metric.hh"
#include "../src/utility/query/types.hh"
#include "../src/utility/Show.hh"
#include "../src/utility/signals/BufferedSignalHub.fwd.hh"
#include "../src/utility/signals/BufferedSignalHub.hh"
#include "../src/utility/signals/Link.fwd.hh"
#include "../src/utility/signals/Link.hh"
#include "../src/utility/signals/LinkUnit.fwd.hh"
#include "../src/utility/signals/LinkUnit.hh"
#include "../src/utility/signals/PausableSignalHub.fwd.hh"
#include "../src/utility/signals/PausableSignalHub.hh"
#include "../src/utility/signals/SignalHub.fwd.hh"
#include "../src/utility/signals/SignalHub.hh"
#include "../src/utility/signals/TokenHub.fwd.hh"
#include "../src/utility/signals/TokenHub.hh"
#include "../src/utility/sort_predicates.hh"
#include "../src/utility/sql_database/sqlite3_connection_manager.fwd.hh"
#include "../src/utility/sql_database/sqlite3_connection_manager.hh"
#include "../src/utility/sql_database/sqlite3_interface.fwd.hh"
#include "../src/utility/sql_database/sqlite3_interface.hh"
#include "../src/utility/string_util.hh"
#include "../src/utility/Tag/Tag.fwd.hh"
#include "../src/utility/Tag/Tag.hh"
#include "../src/utility/tools/make_map.hh"
#include "../src/utility/tools/make_vector.hh"
#include "../src/utility/tools/make_vector0.hh"
#include "../src/utility/tools/make_vector1.hh"
#include "../src/utility/TopScoreSelector.fwd.hh"
#include "../src/utility/TopScoreSelector.hh"
#include "../src/utility/utility.functions.hh"
#include "../src/utility/vector0.fwd.hh"
#include "../src/utility/vector0.hh"
#include "../src/utility/vector0_bool.hh"
#include "../src/utility/vector1.functions.hh"
#include "../src/utility/vector1.fwd.hh"
#include "../src/utility/vector1.hh"
#include "../src/utility/vector1_bool.hh"
#include "../src/utility/vectorL.fwd.hh"
#include "../src/utility/vectorL.hh"
#include "../src/utility/vectorL_bool.hh"
#include "../src/utility/vectorL_Selector.hh"
#include "../test/apps/apps.cxxtest.hh"
#include "../test/apps/public/ligand_docking/ligand_dock.cxxtest.hh"
#include "../test/core/chemical/AtomTypeSet.cxxtest.hh"
#include "../test/core/chemical/automorphism.cxxtest.hh"
#include "../test/core/chemical/MMAtomTypeSet.cxxtest.hh"
#include "../test/core/conformation/Atom.cxxtest.hh"
#include "../test/core/conformation/Conformation.cxxtest.hh"
#include "../test/core/conformation/Interface.cxxtest.hh"
#include "../test/core/conformation/symmetry/SymmetricConformation.cxxtest.hh"
#include "../test/core/core.cxxtest.hh"
#include "../test/core/fragment/ConstantLengthFragments.cxxtest.hh"
#include "../test/core/fragment/IndependentBBTorsionSRFD.cxxtest.hh"
#include "../test/core/fragment/OrderedFragSet.cxxtest.hh"
#include "../test/core/fragment/picking/FragmentCandidatesTests.cxxtest.hh"
#include "../test/core/fragment/picking/TorsionBinIO.cxxtest.hh"
#include "../test/core/fragment/picking/vall/vall.cxxtest.hh"
#include "../test/core/graph/ArrayPool.cxxtest.hh"
#include "../test/core/graph/DisjointSets.cxxtest.hh"
#include "../test/core/graph/Graph.cxxtest.hh"
#include "../test/core/grid/CartGrid.cxxtest.hh"
#include "../test/core/init_util.hh"
#include "../test/core/io/atom_tree_diffs/atom_tree_diff.cxxtest.hh"
#include "../test/core/io/PDB_IO.cxxtest.hh"
#include "../test/core/io/silent/binary_protein_silent.cxxtest.hh"
#include "../test/core/io/silent/pdb_silent.cxxtest.hh"
#include "../test/core/io/silent/protein_silent.cxxtest.hh"
#include "../test/core/io/silent/symmetric_binary_protein_silent.cxxtest.hh"
#include "../test/core/mm/MMBondAngleLibrary.cxxtest.hh"
#include "../test/core/mm/MMBondAngleScore.cxxtest.hh"
#include "../test/core/mm/MMTorsionLibrary.cxxtest.hh"
#include "../test/core/mm/MMTorsionScore.cxxtest.hh"
#include "../test/core/optimization/Minimizer.cxxtest.hh"
#include "../test/core/optimization/ParticleSwarmMinimizer.cxxtest.hh"
#include "../test/core/optimization/symmetry/SymmetricMinimizer.cxxtest.hh"
#include "../test/core/pack/annealer/FASTERAnnealer.cxxtest.hh"
#include "../test/core/pack/interaction_graph/FASTERInteractionGraph.cxxtest.hh"
#include "../test/core/pack/interaction_graph/HPatchInteractionGraph.cxxtest.hh"
#include "../test/core/pack/interaction_graph/InteractionGraphFactory.cxxtest.hh"
#include "../test/core/pack/interaction_graph/RotamerDots.cxxtest.hh"
#include "../test/core/pack/interaction_graph/SurfaceInteractionGraph.cxxtest.hh"
#include "../test/core/pack/rotamer_set/RotamerSet.cxxtest.hh"
#include "../test/core/pack/rotamer_set/RotamerSubsets.cxxtest.hh"
#include "../test/core/pack/RotamerTrials.cxxtest.hh"
#include "../test/core/pack/scmin/AtomTreeCollection.cxxtest.hh"
#include "../test/core/pack/scmin/rtmin_setup.cxxtest.hh"
#include "../test/core/pack/scmin/SCMinMinimizerMap.cxxtest.hh"
#include "../test/core/pack/scmin/SCMinMultifunc.cxxtest.hh"
#include "../test/core/pack/SymmetricRotamerTrials.cxxtest.hh"
#include "../test/core/pack/task/fix_his_tautomer.cxxtest.hh"
#include "../test/core/pack/task/operation/TaskOperations.cxxtest.hh"
#include "../test/core/pack/task/Resfile_Silent.cxxtest.hh"
#include "../test/core/pack/task/ResfileReader.cxxtest.hh"
#include "../test/core/pose/PDBInfo.cxxtest.hh"
#include "../test/core/pose/PDBPoseMap.cxxtest.hh"
#include "../test/core/pose/Pose.cxxtest.hh"
#include "../test/core/pose/util.cxxtest.hh"
#include "../test/core/scoring/carbon_hbonds/CarbonHBondEnergy.cxxtest.hh"
#include "../test/core/scoring/constraints/AngleConstraint.cxxtest.hh"
#include "../test/core/scoring/constraints/AtomPairConstraint.cxxtest.hh"
#include "../test/core/scoring/constraints/BigBinConstraint.cxxtest.hh"
#include "../test/core/scoring/constraints/ConstraintsEnergy.cxxtest.hh"
#include "../test/core/scoring/constraints/ConstraintSetRemapping.cxxtest.hh"
#include "../test/core/scoring/constraints/DihedralConstraint.cxxtest.hh"
#include "../test/core/scoring/constraints/GaussianFunc.cxxtest.hh"
#include "../test/core/scoring/constraints/HarmonicFunc.cxxtest.hh"
#include "../test/core/scoring/constraints/SOGFunc.cxxtest.hh"
#include "../test/core/scoring/constraints/SplineFunc.cxxtest.hh"
#include "../test/core/scoring/constraints/util.cxxtest.hh"
#include "../test/core/scoring/custom_pair_distance/FullatomCustomPairDistanceEnergy.cxxtest.hh"
#include "../test/core/scoring/disulfides/FullatomDisulfideEnergy.cxxtest.hh"
#include "../test/core/scoring/dunbrack/Dunbrack.cxxtest.hh"
#include "../test/core/scoring/EnergyMap.cxxtest.hh"
#include "../test/core/scoring/EnvPairPotential.cxxtest.hh"
#include "../test/core/scoring/etable/EtableEnergy.cxxtest.hh"
#include "../test/core/scoring/FullatomDisulfidePotential.cxxtest.hh"
#include "../test/core/scoring/geometric_solvation/GeometricSolEnergy.cxxtest.hh"
#include "../test/core/scoring/hackelec/HackElecEnergy.cxxtest.hh"
#include "../test/core/scoring/hbonds/HBondDatabaseTest.cxxtest.hh"
#include "../test/core/scoring/hbonds/HBondDerivTest.cxxtest.hh"
#include "../test/core/scoring/hbonds/HBondEnergy.cxxtest.hh"
#include "../test/core/scoring/hbonds/HBondFadeIntervalTest.cxxtest.hh"
#include "../test/core/scoring/hbonds/HBonds.cxxtest.hh"
#include "../test/core/scoring/hbonds/polynomial.cxxtest.hh"
#include "../test/core/scoring/methods/ChainbreakEnergy.cxxtest.hh"
#include "../test/core/scoring/methods/ContactOrderEnergy.cxxtest.hh"
#include "../test/core/scoring/methods/LinearChainbreakEnergy.cxxtest.hh"
#include "../test/core/scoring/methods/MMBondAngleEnergy.cxxtest.hh"
#include "../test/core/scoring/methods/MMTorsionEnergy.cxxtest.hh"
#include "../test/core/scoring/methods/P_AA_Energy.cxxtest.hh"
#include "../test/core/scoring/methods/P_AA_pp_Energy.cxxtest.hh"
#include "../test/core/scoring/methods/PairEnergy.cxxtest.hh"
#include "../test/core/scoring/methods/ProClosureEnergy.cxxtest.hh"
#include "../test/core/scoring/methods/RamachandranEnergy.cxxtest.hh"
#include "../test/core/scoring/methods/RG_Energy.cxxtest.hh"
#include "../test/core/scoring/methods/SecondaryStructureEnergy.cxxtest.hh"
#include "../test/core/scoring/methods/UnfoldedStateEnergy.cxxtest.hh"
#include "../test/core/scoring/rms_util.cxxtest.hh"
#include "../test/core/scoring/sasa.cxxtest.hh"
#include "../test/core/scoring/ScoreTest.cxxtest.hh"
#include "../test/core/scoring/SurfacePotential.cxxtest.hh"
#include "../test/core/scoring/symmetry/SymmetricScoreTest.cxxtest.hh"
#include "../test/core/scoring/UnfoldedStatePotential.cxxtest.hh"
#include "../test/core/scoring/VirtualResidues.cxxtest.hh"
#include "../test/core/sequence/ScoringSchemes.cxxtest.hh"
#include "../test/core/sequence/SequenceAlignment.cxxtest.hh"
#include "../test/core/id/SequenceMapping.cxxtest.hh"
#include "../test/core/sequence/SequenceProfile.cxxtest.hh"
#include "../test/core/sequence/SequenceUtil.cxxtest.hh"
#include "../test/core/util/MetricValueIO.cxxtest.hh"
#include "../test/demo/demo.cxxtest.hh"
#include "../test/devel/devel.cxxtest.hh"
#include "../test/devel/pack_daemon/DynamicAggregateFunction.cxxtest.hh"
#include "../test/devel/pack_daemon/EntityCorrespondence.cxxtest.hh"
#include "../test/devel/pack_daemon/PackDaemon.cxxtest.hh"
#include "../test/numeric/agglomerative_hierarchical_clustering.cxxtest.hh"
#include "../test/numeric/ClusteringTreeNode.cxxtest.hh"
#include "../test/numeric/conversions.cxxtest.hh"
#include "../test/numeric/fourier/fft.cxxtest.hh"
#include "../test/numeric/geometry/BoundingBox.cxxtest.hh"
#include "../test/numeric/HomogeneousTransform.cxxtest.hh"
#include "../test/numeric/interpolation/Histogram.cxxtest.hh"
#include "../test/numeric/interpolation/spline/Bicubic_spline.cxxtest.hh"
#include "../test/numeric/interpolation/spline/Cubic_spline.cxxtest.hh"
#include "../test/numeric/kdtree/kdtree.cxxtest.hh"
#include "../test/numeric/MultiDimensionalHistogram.cxxtest.hh"
#include "../test/numeric/numeric.cxxtest.hh"
#include "../test/numeric/numeric.functions.cxxtest.hh"
#include "../test/numeric/Quaternion.cxxtest.hh"
#include "../test/numeric/random/reservoir_sample.cxxtest.hh"
#include "../test/numeric/random/WeightedSampler.cxxtest.hh"
#include "../test/numeric/random.cxxtest.hh"
#include "../test/numeric/statistics.functions.cxxtest.hh"
#include "../test/numeric/util.cxxtest.hh"
#include "../test/numeric/xyz.functions.cxxtest.hh"
#include "../test/numeric/xyzMatrix.cxxtest.hh"
#include "../test/numeric/xyzTriple.cxxtest.hh"
#include "../test/numeric/xyzVector.cxxtest.hh"
#include "../test/ObjexxFCL/ObjexxFCL.cxxtest.hh"
#include "../test/protocols/abinitio/FragmentMover.cxxtest.hh"
#include "../test/protocols/abinitio/GunnCost.cxxtest.hh"
#include "../test/protocols/abinitio/PseudocontactShiftEnergy.cxxtest.hh"
#include "../test/protocols/abinitio/WobbleMover.cxxtest.hh"
#include "../test/protocols/branch_angle/BranchAngleOptimizer.cxxtest.hh"
#include "../test/protocols/cluster/APCluster.cxxtest.hh"
#include "../test/protocols/comparative_modeling/AlignmentStream.cxxtest.hh"
#include "../test/protocols/comparative_modeling/ThreadingMover.cxxtest.hh"
#include "../test/protocols/comparative_modeling/util.cxxtest.hh"
#include "../test/protocols/docking/DockingTest.cxxtest.hh"
#include "../test/protocols/enzdes/HBondCalculatorsTest.cxxtest.hh"
#include "../test/protocols/enzdes/LigInterfaceConstraints.cxxtest.hh"
#include "../test/protocols/enzdes/MatchConstraintFileInfo.cxxtest.hh"
#include "../test/protocols/enzdes/PredockRotCenter.cxxtest.hh"
#include "../test/protocols/forge/build/Bridge.cxxtest.hh"
#include "../test/protocols/forge/build/BuildManager.cxxtest.hh"
#include "../test/protocols/forge/build/ConnectRight.cxxtest.hh"
#include "../test/protocols/forge/build/GrowLeft.cxxtest.hh"
#include "../test/protocols/forge/build/GrowRight.cxxtest.hh"
#include "../test/protocols/forge/build/RelativeConnectRight.cxxtest.hh"
#include "../test/protocols/forge/build/SegmentInsert.cxxtest.hh"
#include "../test/protocols/forge/build/SegmentRebuild.cxxtest.hh"
#include "../test/protocols/forge/build/SegmentSwap.cxxtest.hh"
#include "../test/protocols/forge/methods/fold_tree_functions.cxxtest.hh"
#include "../test/protocols/genetic_algorithm/Entity.cxxtest.hh"
#include "../test/protocols/init_util.hh"
#include "../test/protocols/jobdist/PlainSilentFileJobDistributor.cxxtest.hh"
#include "../test/protocols/jumping/Dssp.cxxtest.hh"
#include "../test/protocols/jumping/JumpSetup.cxxtest.hh"
#include "../test/protocols/ligand_docking/ResidueTorsionRestraints.cxxtest.hh"
#include "../test/protocols/match/BumpGrid.cxxtest.hh"
#include "../test/protocols/match/ExternalGeomSampler.cxxtest.hh"
#include "../test/protocols/match/Hasher.cxxtest.hh"
#include "../test/protocols/match/LigandConformer.cxxtest.hh"
#include "../test/protocols/match/OccupiedSpaceHash.cxxtest.hh"
#include "../test/protocols/match/ProteinSCSampler.cxxtest.hh"
#include "../test/protocols/match/ProteinUpstreamBuilder.cxxtest.hh"
#include "../test/protocols/match/RigidLigandBuilder.cxxtest.hh"
#include "../test/protocols/match/ScaffoldBuildPoint.cxxtest.hh"
#include "../test/protocols/match/VoxelSetIterator.cxxtest.hh"
#include "../test/protocols/moves/BackrubMover.cxxtest.hh"
#include "../test/protocols/moves/DummyMover.hh"
#include "../test/protocols/moves/kinematic_closure/TorsionSamplingKinematicPerturber.cxxtest.hh"
#include "../test/protocols/moves/MoverContainer.cxxtest.hh"
#include "../test/protocols/moves/MoversTest.cxxtest.hh"
#include "../test/protocols/moves/RigidBodyMover.cxxtest.hh"
#include "../test/protocols/moves/RotateJumpAxisMover.cxxtest.hh"
#include "../test/protocols/moves/ScoreTest.cxxtest.hh"
#include "../test/protocols/moves/ShearMover.cxxtest.hh"
#include "../test/protocols/moves/SmallMover.cxxtest.hh"
#include "../test/protocols/moves/TaskAwareMinMover.cxxtest.hh"
#include "../test/protocols/moves/TypesetMovers.cxxtest.hh"
#include "../test/protocols/optimize_weights/Arithmetic.cxxtest.hh"
#include "../test/protocols/optimize_weights/DDGBindOptEData.cxxtest.hh"
#include "../test/protocols/protocols.cxxtest.hh"
#include "../test/protocols/toolbox/PoseMetricCalculators/Neighbor_Calculators.cxxtest.hh"
#include "../test/protocols/toolbox/TaskOperations/ProteinInterfaceDesignOperation.cxxtest.hh"
#include "../test/protocols/toolbox/TaskOperations/RestrictNonSurfaceToRepackingOperation.cxxtest.hh"
#include "../test/protocols/toolbox/TaskOperations/RestrictOperations.cxxtest.hh"
#include "../test/protocols/util/cout.cxxtest.hh"
#include "../test/UMoverTest.hh"
#include "../test/util/deriv_funcs.hh"
#include "../test/util/pdb1rpb.hh"
#include "../test/util/pdb1ubq.hh"
#include "../test/util/pose_funcs.hh"
#include "../test/util/symmetric_deriv_funcs.hh"
#include "../test/utility/BitSet.cxxtest.hh"
#include "../test/utility/BitVector.cxxtest.hh"
#include "../test/utility/factory/Factory.cxxtest.hh"
#include "../test/utility/file/file_sys_util.cxxtest.hh"
#include "../test/utility/file/PathName.cxxtest.hh"
#include "../test/utility/heap.cxxtest.hh"
#include "../test/utility/in_place_list.cxxtest.hh"
#include "../test/utility/integer_mapping.cxxtest.hh"
#include "../test/utility/io/izstream.cxxtest.hh"
#include "../test/utility/io/zipstream.cxxtest.hh"
#include "../test/utility/keys/AutoKey.cxxtest.hh"
#include "../test/utility/keys/ClassKeyMap.cxxtest.hh"
#include "../test/utility/keys/ClassKeyMap.test.hh"
#include "../test/utility/keys/ClassKeyVector.cxxtest.hh"
#include "../test/utility/keys/Key4Tuple.cxxtest.hh"
#include "../test/utility/keys/Key4Vector.cxxtest.hh"
#include "../test/utility/keys/SmallKeyMap.cxxtest.hh"
#include "../test/utility/keys/SmallKeyVector.cxxtest.hh"
#include "../test/utility/keys/UserKey.cxxtest.hh"
#include "../test/utility/LexicographicalIterator.cxxtest.hh"
#include "../test/utility/OrderedTuple.cxxtest.hh"
#include "../test/utility/pointer/access_ptr.cxxtest.hh"
#include "../test/utility/pointer/owning_ptr.cxxtest.hh"
#include "../test/utility/pointer/owning_ptr_MI.cxxtest.hh"
#include "../test/utility/signals/BufferedSignalHub.cxxtest.hh"
#include "../test/utility/signals/PausableSignalHub.cxxtest.hh"
#include "../test/utility/signals/SignalHub.cxxtest.hh"
#include "../test/utility/signals/TokenHub.cxxtest.hh"
#include "../test/utility/sql_database/Sqlite3ConnectionManager.cxxtest.hh"
#include "../test/utility/sql_database/Sqlite3Interface.cxxtest.hh"
#include "../test/utility/string_util.cxxtest.hh"
#include "../test/utility/TopScoreSelector.cxxtest.hh"
#include "../test/utility/utility.cxxtest.hh"
#include "../test/utility/UTools.cxxtest.hh"
#include "../test/utility/vector0.cxxtest.hh"
#include "../test/utility/vector1.cxxtest.hh"
#include "../test/utility/vector1_bool.cxxtest.hh"
#include "../test/utility/vectorL.cxxtest.hh"
#include "../test/UTools.hh"
#include "../test/UTracer.hh"