# -*- mode:python;indent-tabs-mode:nil;show-trailing-whitespace:t; -*- # # Project settings for protocols tests. # (c) Copyright Rosetta Commons Member Institutions. # (c) This file is part of the Rosetta software suite and is made available under license. # (c) The Rosetta software is developed by the contributing members of the Rosetta Commons. # (c) For more information, see http://www.rosettacommons.org. Questions about this can be # (c) addressed to University of Washington UW TechTransfer, email: license@u.washington.edu. ########### KEEP DIRECTORIES AND FILES IN ALPHABETICAL ORDER ########### sources = { "abinitio" : [ "FragmentMover", "GunnCost", "PseudocontactShiftEnergy", "WobbleMover", ], "antibody": [ "AntibodyInfo", ], "antibody/clusters" : [ "ClusterTests", ], "branch_angle" : [ "BranchAngleOptimizer", ], "cluster" : [ "APCluster", ], "comparative_modeling" : [ "ExtraThreadingMover", "ThreadingMover", "util", ], "docking" : [ "DockingTest", "SetupDockingFoldTree", ], "environment" : [ "Environment", ], "enzdes" : [ "HBondCalculatorsTest", "LigInterfaceConstraints", "MatchConstraintFileInfo", "PredockRotCenter", "ResfileAutoRemap", ], "features" : [ "BetaTurnDetectionFeatures", "FeaturesReporterTests", "InterfaceFeaturesTests", "ProteinSilentReportTests", "CoordSerializationTests", ], "filters" : [ "BasicFilters", "CalculatorFilter", "ReplicateFilter", ], "frag_picker" : [ "FragmentCandidatesTests", "TorsionBinIO", ], "forge/build" : [ "Bridge", "BuildManager", "ConnectRight", "GrowLeft", "GrowRight", "RelativeConnectRight", "SegmentInsert", "SegmentRebuild", "SegmentSwap", ], "forge/methods" :[ "fold_tree_functions", ], "forge/remodel" :[ "RemodelConstraintGenerator", ], "genetic_algorithm" : [ "Entity", ], "grafting" : [ "GraftingTest", ], "hotspot_hashing" : [ "hotspot_hashing", ], "jd2" : [ "JD2ResourceManager", "JD2ResourceManagerJobInputter", "JD2ResourceManagerJobInputterSimplifiedInput", "JD2ResourceManagerJobInputterMultipleJobTags", "JobOutputter", ], "jd2/parser" : [ "BluePrint", ], "jobdist" : [ "PlainSilentFileJobDistributor", ], "jumping" : [ "Dssp", "JumpSetup", ], #"kinematic_closure" : [ # "ClosureTests", #], "ligand_docking": [ "ResidueTorsionRestraints", ], "loophash" : [ "loophash", ], "loops" : [ "Loop", "Loops", "LoopsFileFallbackConfiguration", "LoopsFileIO", "LoopsFileLoader", "LoopsFileOptions", "LoopsFoldTree", "LoopsUtil", ], "match" : [ "BumpGrid", "ExternalGeomSampler", "Hasher", "LigandConformer", "MatchConsolidator", "OccupiedSpaceHash", "ProteinSCSampler", "ProteinUpstreamBuilder", "ScaffoldBuildPoint", "RigidLigandBuilder", "VoxelSetIterator", ], "match_enzdes_util" : [ "InvrotTree", ], "membrane" : [ "MembraneProteinFactory", #"MembraneProteinLoader", ], "motif_grafting" : [ "MotifGraftMover" ], "moves" : [ "BackrubMover", "MoverContainer", "MoversTest", "ScoreTest", "SmallMover", "ShearMover", "TypesetMovers", "TaskAwareMinMover", ], "moves/kinematic_closure" : [ "TorsionSamplingKinematicPerturber", "VicinitySamplingKinematicPerturber", ], "nonlocal" : [ "Chunk", "NonlocalUtil", "Region", ], "optimize_weights" : [ "Arithmetic", "DDGBindOptEData", ], "pack_daemon" : [ "DynamicAggregateFunction", "EntityCorrespondence", "MultistateFitnessFunction", "PackDaemon", ], "pmut_scan" : [ "PointMutScanDriver", ], "protein_interface_design" : [ "protein_interface_design", ], "qsar/scoring_grid" : [ "ScoreNormalization", ], "relax" : [ "AtomCoordinateCstMover", ], "rigid" : [ "RigidBodyMover", "RotateJumpAxisMover", ], "rosetta_scripts" : [ "MultiplePoseMover", ], "rotamer_recovery" : [ "RotamerRecovery", "RRComparer", "RRReporter", "RRReporterSQLite", ], "scoring" : [ "InterchainEnvEnergy", "InterchainPairEnergy", "Interface", ], "simple_filters" : [ "DdgFilter", "ResidueCountFilter", "TotalSasaFilter", ], "simple_moves" : [ "ddG", "FavorSequenceProfile", ], #"simple_moves/chiral" : [ #"ChiralMover", #], "simple_moves/oop" : [ "OopPuckMover", ], "sparta" : [ "Sparta", ], "surface_docking" : [ "SurfaceVectorLoader", ], "toolbox/pose_metric_calculators" : [ "Neighbor_Calculators", # SolubilityCalculator", ], "toolbox/task_operations" : [ "LimitAromaChi2Operation", "ProteinInterfaceDesignOperation", "RestrictOperations", "RestrictNonSurfaceToRepackingOperation", "RestrictToCDRH3Loop", ], "util": [ "cout", ], } include_path = [ "#external/cxxtest", "#" ] library_path = [] libraries = [ "devel", "protocols.7", "protocols.6", "protocols_f.5", "protocols_e.5", "protocols_d.5", "protocols_c.5", "protocols_b.5", "protocols_a.5", "protocols_h.4", "protocols_g.4", "protocols_f.4", "protocols_e.4", "protocols_d.4", "protocols_c.4", "protocols_b.4", "protocols_a.4", "protocols.3", "protocols_b.2", "protocols_a.2", "protocols.1", "core.5", "core.4", "core.3", "core.2", "core.1", "basic", "numeric", "utility", "ObjexxFCL", "z", "cppdb", "sqlite3" ] subprojects = [] testinputfiles = [ "abinitio/2GB3.pdb", "abinitio/mfr_aa2GB3_03_05.200_v1_3", "abinitio/mfr_aa2GB3_09_05.200_v1_3", "abinitio/valid_ss.dat", "abinitio/pdb_idealized_for_pcs_test.pdb", "abinitio/pcs_data1.npc", "abinitio/pcs_data2.npc", "abinitio/frag3_for_pcs_test.tab.gz", "abinitio/frag9_for_pcs_test.tab.gz", "abinitio/pcs_broker_setup.txt", "abinitio/score0_pcs_only.wts_patch", "abinitio/score1_pcs_only.wts_patch", "abinitio/score2_pcs_only.wts_patch", "abinitio/score5_pcs_only.wts_patch", "abinitio/score3_pcs_only.wts_patch", "antibody/2j88.pdb", "antibody/1bln_AB_chothia.pdb", "antibody/1bln_AB_aho.pdb", "branch_angle/BranchAngleOptimizer.u", "branch_angle/branch_angle_1.txt", "branch_angle/branch_angle_2.txt", # "core/conformation/dock_in.pdb", # RestrictToInterfaceOperation and others in toolbox use this pdb file "comparative_modeling/1f4pA.pdb", "comparative_modeling/4gat_all.pdb", "comparative_modeling/4gat_protein.pdb", "docking/DockingTest.pdb", "docking/DockingDecoy.pdb", "docking/DockingMultiChain.pdb", "docking/DockingProtocolFunctions.u", "docking/DockingSlideIntoContact.pdb", "docking/DockingPacking.pdb", "docking/DockingRigidBodyMinimize.pdb", "enzdes/D2N.params", "enzdes/ligtest_it.pdb", "enzdes/ligtest_it.cst", "enzdes/D2MX.params", "enzdes/mcfi_test.cst", "enzdes/parse_cst_test.xml", "enzdes/resfile_remap.resfile", "features/2J88.pdb", "forge/remodel/bad_pair.blueprint", "forge/remodel/test.blueprint", "forge/remodel/test.pdb", "frag_picker/t286_.6.csts", "frag_picker/1a32A-H1.vall", "frag_picker/1a32A-H1.9mers", "grafting/2j88_NoL1.pdb", "grafting/2j88_L1_overhang3_rotated.pdb", "hotspot_hashing/3ve0_IJ.pdb", "jd2/parser/test.bbskel", "jobdist/PlainSilentFileJobDistributor_test.out", "jumping/jump_test.pdb", "jumping/gb3_secondary_structure.dat", "jumping/pairings.dat", "jumping/gold_distance_jump1.dat", "jumping/gold_distance_jump2.dat", "jumping/test_in.pdb", "jumping/jumps.def", "kinematic_closure/inputs/1ubq.pdb", "kinematic_closure/inputs/1srp.pdb", "kinematic_closure/inputs/1exm.pdb", "kinematic_closure/inputs/3cla.pdb", "ligand_docking/7cpa.params", "ligand_docking/7cpa_7cpa_native.pdb", "ligand_docking/7cpa_confs.pdb", "ligand_docking/ZNx.params", "loops/2GB3.pdb", "loops/4DZM.pdb", "match/carbaryl_LG1.params", "match/E1cb_carbaryl_1his_oxy_1bb_10_2.pdb", "match/MBH_LG.params", "match/mbh_lg_0001.pdb", "moves/test_in.pdb", "match/carbaryl_LG1.params", "match/E1cb_carbaryl_1his_oxy_1bb_10_2.pdb", "match/MBH_LG.params", "match/mbh_lg_0001.pdb", "match_enzdes_util/mocktim.cst", "match_enzdes_util/1n1.params", "match_enzdes_util/1ney_invtree_unittest.pdb", "motif_grafting/2nm1_context.pdb", "motif_grafting/2nm1_motif_1fragment.pdb", "motif_grafting/2nm1_motif_2fragment.pdb", "motif_grafting/1zx3a.pdb", "motif_grafting/1zx3a_translated_and_rotated.pdb", "motif_grafting/2nm1_1zx3a_hybrid.pdb", "motif_grafting/1zx3a_as_motif_1fragment.pdb", "motif_grafting/1zx3a_as_motif_2fragment.pdb", "motif_grafting/1zx3a_as_motif_3fragment.pdb", "moves/centroid_typeset.test_in_short.pdb", "moves/fullatom_typeset.test_in_short.pdb", "moves/kinematic_closure/VicinitySamplingKinematicPerturber.u", "moves/score12.pdb", "moves/score12.u", "moves/shearmoves_out.pdb", "moves/smallmoves_out.pdb", "moves/test_in.pdb", "moves/test_in_short.pdb", "membrane/membrane_full.xml", "membrane/membrane.xml", "membrane/chains.txt", "membrane/1afo_A.pdb", "membrane/1afo_A.span", "membrane/1afo_A.embed", "membrane/1afo_B.pdb", "membrane/1afo_B.span", "membrane/1afo_B.embed", "nonlocal/2GB3.pdb", "nonlocal/alignment.filt", "optimize_weights/1UAD.wt_complex.pdb", "optimize_weights/1UAD.wt_unbounded.pdb", "optimize_weights/1UAD.E38A.mut_complex.pdb", "optimize_weights/1UAD.E38A.mut_unbounded.pdb", "pmut_scan/mutants.txt", "pmut_scan/shortloop.01.pdb.gz", "pmut_scan/shortloop.02.pdb.gz", "relax/1a19.pdb", "relax/1a19_trunc.pdb", "relax/AtomCoordinateCstMover_native.pdb", "relax/AtomCoordinateCstMover_input_harmonic_default.cst", "relax/AtomCoordinateCstMover_input_bounded_default.cst", "relax/AtomCoordinateCstMover_native_harmonic_default.cst", "relax/AtomCoordinateCstMover_input_harmonic_sidechain.cst", "relax/AtomCoordinateCstMover_native_harmonic_sidechain.cst", "relax/AtomCoordinateCstMover_integration_native.cst", "rigid/RigidBodyMover.pdb", "rigid/RigidBodyPerturbMover_no_int.pdb", "rigid/RigidBodyPerturbMover_int.pdb", "rigid/RigidBodyPerturbNoCenterMover.pdb", "rigid/RigidBodyRandomizeMover.pdb", "rigid/RigidBodySpinMover.pdb", "rigid/RigidBodyTransMover.pdb", "rigid/RotateJumpAxisMover.pdb", "rigid/RotateJumpAxisMover_random.pdb", "rigid/RotateJumpAxisMover_range.pdb", "rigid/RotateJumpAxisMover_single.pdb", "rigid/RotateJumpAxisMover_underspecified_jump.pdb", "scoring/Interface.u", "scoring/dock_in.pdb", "simple_moves/1bl0_auto.fasta.pssm", #"simple_moves/chiral/AAdAdA.pdb", #"simple_moves/chiral/DALA.params", "simple_moves/oop/oop_test.pdb", "sparta/2kywA.pdb", "sparta/data_16988.tab", "sparta/data_17280.tab", "sparta/solution_0022372568.ir_solution.pdb", "sparta/SAM-T08-server_TS3.pdb", "sparta/17280_trim.tab", "toolbox/task_operations/RestrictToInterfaceOperation.u", "toolbox/task_operations/RestrictToInterfaceVectorOperation.u", "toolbox/task_operations/RestrictToNeighborhoodOperation.u", "toolbox/task_operations/RestrictByCalculatorsOperation.u", "toolbox/task_operations/ProteinInterfaceDesignOperation.u", "toolbox/task_operations/ProteinInterfaceDesignOperation_all.u", "toolbox/task_operations/RestrictInterGroupVector.u", "util/aHo_antibody.pdb", "util/demo_loopfile.loops", "util/test_in.pdb", ]