## This is just the log from 'wget http://test.rosettacommons.org/viewlog/67438', for test r56155 on 2013-12-17, SHA1 acfb7e6ca0e1a2827a4576e1e10bf7a588752922

<pre>Using Rosetta source dir at:  /home/benchmark/svd.64.git/rosetta/main/source
Using Rosetta databse dir at: /home/benchmark/svd.64.git/rosetta/main/database
Running Test swa_rna_gagu_14_combine_long_loop_filtering
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_14_combine_long_loop_filtering/command.sh
Finished swa_rna_gagu_14_combine_long_loop_filtering in   2 seconds	 [~  25 test (10%) started,  225 in queue,   24 running]
Running Test swa_rna_gagu_13_chunk_combination_and_closure
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_13_chunk_combination_and_closure/command.sh
Finished swa_rna_gagu_13_chunk_combination_and_closure in   2 seconds	 [~  26 test (10%) started,  224 in queue,   24 running]
Running Test swa_rna_gagu_15_combine_long_loop_sampling
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_15_combine_long_loop_sampling/command.sh
Finished swa_rna_gagu_15_combine_long_loop_sampling in   3 seconds	 [~  27 test (10%) started,  223 in queue,   24 running]
Running Test swa_rna_gagu_06_append_to_3primeterminus
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_06_append_to_3primeterminus/command.sh
Finished swa_rna_gagu_06_append_to_3primeterminus in   4 seconds	 [~  28 test (11%) started,  222 in queue,   24 running]
Running Test sweep_respair_energies
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/sweep_respair_energies/command.sh
Finished sweep_respair_energies                   in   4 seconds	 [~  29 test (11%) started,  221 in queue,   24 running]
Running Test swa_rna_gagu_04_clustering
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_04_clustering/command.sh
Finished swa_rna_gagu_04_clustering               in   3 seconds	 [~  30 test (12%) started,  220 in queue,   24 running]
Running Test swa_rna_gagu_05_prepend_to_5primeterminus
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_05_prepend_to_5primeterminus/command.sh
Running Test swa_rna_gagu_03_append_to_silent
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_03_append_to_silent/command.sh
Running Test swa_rna_erraser
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_erraser/command.sh
Finished swa_rna_gagu_05_prepend_to_5primeterminus in   3 seconds	 [~  31 test (12%) started,  219 in queue,   24 running]
Finished swa_rna_gagu_03_append_to_silent         in   2 seconds	 [~  31 test (12%) started,  219 in queue,   23 running]
Finished swa_rna_erraser                          in   0 seconds	 [~  31 test (12%) started,  219 in queue,   22 running]
Running Test swa_rna_gagu_02_prepend
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_02_prepend/command.sh
Finished swa_rna_gagu_02_prepend                  in   3 seconds	 [~  34 test (13%) started,  216 in queue,   24 running]
Running Test swm_nickedhelix
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swm_nickedhelix/command.sh
Running Test write_mol_file
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/write_mol_file/command.sh
Finished write_mol_file                           in   7 seconds	 [~  35 test (14%) started,  215 in queue,   24 running]
Finished swm_nickedhelix                          in   7 seconds	 [~  35 test (14%) started,  215 in queue,   23 running]
Running Test swa_rna_gagu_01_append
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_01_append/command.sh
Finished swa_rna_gagu_01_append                   in   3 seconds	 [~  37 test (14%) started,  213 in queue,   24 running]
Running Test swa_rna_gagu_12_helix_addition
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_12_helix_addition/command.sh
Finished swa_rna_gagu_12_helix_addition           in   8 seconds	 [~  38 test (15%) started,  212 in queue,   24 running]
Running Test swa_rna_gagu_17_append_floating_base
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_17_append_floating_base/command.sh
Running Test swa_rna_gagu_11_append_and_ccd_close
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_11_append_and_ccd_close/command.sh
Finished swa_rna_gagu_17_append_floating_base     in   9 seconds	 [~  39 test (15%) started,  211 in queue,   24 running]
Finished swa_rna_gagu_11_append_and_ccd_close     in   9 seconds	 [~  39 test (15%) started,  211 in queue,   23 running]
Running Test swa_rna_gagu_09_sample_virtual_ribose
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_09_sample_virtual_ribose/command.sh
Running Test swa_rna_gagu_20_append_floating_base_by_jump
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_20_append_floating_base_by_jump/command.sh
Running Test rna_suitename
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/rna_suitename/command.sh
Finished swa_rna_gagu_20_append_floating_base_by_jump in   9 seconds	 [~  41 test (16%) started,  209 in queue,   24 running]
Finished swa_rna_gagu_09_sample_virtual_ribose    in   9 seconds	 [~  41 test (16%) started,  209 in queue,   23 running]
Finished rna_suitename                            in   2 seconds	 [~  43 test (17%) started,  207 in queue,   24 running]
Running Test swa_rna_gagu_08_append_dinucleotide
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_08_append_dinucleotide/command.sh
Finished swa_rna_gagu_08_append_dinucleotide      in   9 seconds	 [~  44 test (17%) started,  206 in queue,   24 running]
Running Test swa_rna_gagu_19_prepend_floating_base_by_jump
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_19_prepend_floating_base_by_jump/command.sh
Finished swa_rna_gagu_19_prepend_floating_base_by_jump in  10 seconds	 [~  45 test (18%) started,  205 in queue,   24 running]
Running Test swa_rna_gagu_07_prepend_dinucleotide
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_07_prepend_dinucleotide/command.sh
Finished swa_rna_gagu_07_prepend_dinucleotide     in  10 seconds	 [~  46 test (18%) started,  204 in queue,   24 running]
Running Test swa_rna_gagu_10_prepend_and_ccd_close
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_10_prepend_and_ccd_close/command.sh
Finished swa_rna_gagu_10_prepend_and_ccd_close    in  11 seconds	 [~  47 test (18%) started,  203 in queue,   24 running]
Running Test swa_rna_gagu_23_append_and_kic_close
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_23_append_and_kic_close/command.sh
Finished swa_rna_gagu_23_append_and_kic_close     in  12 seconds	 [~  48 test (19%) started,  202 in queue,   24 running]
Running Test swm_loop_design
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swm_loop_design/command.sh
Running Test swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump/command.sh
Finished swm_loop_design                          in  13 seconds	 [~  49 test (19%) started,  201 in queue,   24 running]
Finished swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump in  13 seconds	 [~  49 test (19%) started,  201 in queue,   23 running]
Running Test swa_rna_gagu_22_prepend_and_kic_close
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_22_prepend_and_kic_close/command.sh
Finished swa_rna_gagu_22_prepend_and_kic_close    in  15 seconds	 [~  51 test (20%) started,  199 in queue,   24 running]
Running Test rosetta_scripts_hbond_options
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/rosetta_scripts_hbond_options/command.sh
Running Test database_jd2_compact_io
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/database_jd2_compact_io/command.sh
Finished rosetta_scripts_hbond_options            in   9 seconds	 [~  52 test (20%) started,  198 in queue,   24 running]
Finished database_jd2_compact_io                  in   6 seconds	 [~  52 test (20%) started,  198 in queue,   23 running]
Running Test buried_unsat_kinemage
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/buried_unsat_kinemage/command.sh
Finished buried_unsat_kinemage                    in   5 seconds	 [~  54 test (21%) started,  196 in queue,   24 running]
Running Test contactMap
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/contactMap/command.sh
Finished contactMap                               in   6 seconds	 [~  55 test (22%) started,  195 in queue,   24 running]
Running Test phosphonate
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/phosphonate/command.sh
Finished phosphonate                              in   8 seconds	 [~  56 test (22%) started,  194 in queue,   24 running]
Running Test swm_fourwayjunction
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swm_fourwayjunction/command.sh
Finished swm_fourwayjunction                      in  18 seconds	 [~  57 test (22%) started,  193 in queue,   24 running]
Running Test add_job_pair_data
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/add_job_pair_data/command.sh
Finished add_job_pair_data                        in   5 seconds	 [~  58 test (23%) started,  192 in queue,   24 running]
Running Test surface_docking
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/surface_docking/command.sh
Finished surface_docking                          in  16 seconds	 [~  59 test (23%) started,  191 in queue,   24 running]
Running Test ProQ
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/ProQ/command.sh
Running Test antibody_graft
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/antibody_graft/command.sh
Finished antibody_graft                           in  14 seconds	 [~  60 test (24%) started,  190 in queue,   24 running]
Finished ProQ                                     in  11 seconds	 [~  60 test (24%) started,  190 in queue,   23 running]
Running Test readin_dna_rna_protein
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/readin_dna_rna_protein/command.sh
Finished readin_dna_rna_protein                   in  20 seconds	 [~  62 test (24%) started,  188 in queue,   24 running]
Running Test swm_singleloop
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swm_singleloop/command.sh
Finished swm_singleloop                           in  29 seconds	 [~  63 test (25%) started,  187 in queue,   24 running]
Running Test place_simultaneously
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/place_simultaneously/command.sh
Running Test swa_protein_loop_sampler
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_protein_loop_sampler/command.sh
Finished swa_protein_loop_sampler                 in  24 seconds	 [~  64 test (25%) started,  186 in queue,   24 running]
Finished place_simultaneously                     in  22 seconds	 [~  64 test (25%) started,  186 in queue,   23 running]
Running Test swa_rna_gagu_18_rebuild_bulge
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_18_rebuild_bulge/command.sh
Finished swa_rna_gagu_18_rebuild_bulge            in  31 seconds	 [~  66 test (26%) started,  184 in queue,   24 running]
Running Test ligand_database_io
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/ligand_database_io/command.sh
Finished ligand_database_io                       in  12 seconds	 [~  67 test (26%) started,  183 in queue,   24 running]
Running Test swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide/command.sh
Finished swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide in  39 seconds	 [~  68 test (27%) started,  182 in queue,   24 running]
Running Test hts_io
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/hts_io/command.sh
Error: near line 4: no such table: protocols
Error: near line 5: no such table: protocols
Finished hts_io                                   in  34 seconds	 [~  69 test (27%) started,  181 in queue,   24 running]
Running Test antibody_designer
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/antibody_designer/command.sh
Finished antibody_designer                        in  32 seconds	 [~  70 test (28%) started,  180 in queue,   24 running]
Running Test pocket_relax
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/pocket_relax/command.sh
Finished pocket_relax                             in  35 seconds	 [~  71 test (28%) started,  179 in queue,   24 running]
Running Test antibody_legacy
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/antibody_legacy/command.sh
Finished antibody_legacy                          in  43 seconds	 [~  72 test (28%) started,  178 in queue,   24 running]
Running Test density_refine
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/density_refine/command.sh
Finished density_refine                           in  34 seconds	 [~  73 test (29%) started,  177 in queue,   24 running]
Running Test hybridization
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/hybridization/command.sh
Finished hybridization                            in  65 seconds	 [~  74 test (29%) started,  176 in queue,   24 running]
Running Test app_exception_handling
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/app_exception_handling/command.sh
wc: log: No such file or directory
Finished app_exception_handling                   in  66 seconds	 [~  75 test (30%) started,  175 in queue,   24 running]
Running Test antibody_H3_legacy
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/antibody_H3_legacy/command.sh
Finished antibody_H3_legacy                       in  67 seconds	 [~  76 test (30%) started,  174 in queue,   24 running]
Running Test kinemage_grid_output
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/kinemage_grid_output/command.sh
Finished kinemage_grid_output                     in  47 seconds	 [~  77 test (30%) started,  173 in queue,   24 running]
Running Test antibody_H3
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/antibody_H3/command.sh
Finished antibody_H3                              in  82 seconds	 [~  78 test (31%) started,  172 in queue,   24 running]
Running Test supercharge
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/supercharge/command.sh
Finished supercharge                              in  71 seconds	 [~  79 test (31%) started,  171 in queue,   24 running]
Running Test swa_rna_loop_sampler
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_loop_sampler/command.sh
Finished swa_rna_loop_sampler                     in   3 seconds	 [~  80 test (32%) started,  170 in queue,   24 running]
Running Test rs_loophash
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/rs_loophash/command.sh
Finished rs_loophash                              in  73 seconds	 [~  81 test (32%) started,  169 in queue,   24 running]
Running Test dock_with_hotspot_place_simultaneously
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/dock_with_hotspot_place_simultaneously/command.sh
Finished dock_with_hotspot_place_simultaneously   in  95 seconds	 [~  82 test (32%) started,  168 in queue,   24 running]
Running Test ligand_motif_design
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/ligand_motif_design/command.sh
Finished ligand_motif_design                      in  54 seconds	 [~  83 test (33%) started,  167 in queue,   24 running]
Running Test AnchorFinder
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/AnchorFinder/command.sh
Finished AnchorFinder                             in  57 seconds	 [~  84 test (33%) started,  166 in queue,   24 running]
Running Test membrane_relax
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/membrane_relax/command.sh
Finished membrane_relax                           in  89 seconds	 [~  85 test (34%) started,  165 in queue,   24 running]
Running Test motif_dna_packer_design
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/motif_dna_packer_design/command.sh
Finished motif_dna_packer_design                  in 100 seconds	 [~  86 test (34%) started,  164 in queue,   24 running]
Running Test doug_dock_design_min_mod2_cal_cal
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/doug_dock_design_min_mod2_cal_cal/command.sh
Running Test rna_minimize
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/rna_minimize/command.sh
Finished doug_dock_design_min_mod2_cal_cal        in  44 seconds	 [~  87 test (34%) started,  163 in queue,   24 running]
Finished rna_minimize                             in  18 seconds	 [~  87 test (34%) started,  163 in queue,   23 running]
Running Test ligand_dock_script
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/ligand_dock_script/command.sh
Finished ligand_dock_script                       in  93 seconds	 [~  89 test (35%) started,  161 in queue,   24 running]
Running Test enzdes
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/enzdes/command.sh
Finished enzdes                                   in  93 seconds	 [~  90 test (36%) started,  160 in queue,   24 running]
Running Test rna_design
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/rna_design/command.sh
Finished rna_design                               in  20 seconds	 [~  91 test (36%) started,  159 in queue,   24 running]
Running Test inverse_rotamer_remodel
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/inverse_rotamer_remodel/command.sh
Finished inverse_rotamer_remodel                  in 113 seconds	 [~  92 test (36%) started,  158 in queue,   24 running]
Running Test kinematic_looprelax
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/kinematic_looprelax/command.sh
Finished kinematic_looprelax                      in  52 seconds	 [~  93 test (37%) started,  157 in queue,   24 running]
Running Test repack_with_elec_dens
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/repack_with_elec_dens/command.sh
Finished repack_with_elec_dens                    in   9 seconds	 [~  94 test (37%) started,  156 in queue,   24 running]
Running Test remodel_disulfides
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/remodel_disulfides/command.sh
Finished remodel_disulfides                       in 132 seconds	 [~  95 test (38%) started,  155 in queue,   24 running]
Running Test ligand_water_docking
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/ligand_water_docking/command.sh
Finished ligand_water_docking                     in 131 seconds	 [~  96 test (38%) started,  154 in queue,   24 running]
Running Test dna_interface_design
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/dna_interface_design/command.sh
Finished dna_interface_design                     in 105 seconds	 [~  97 test (38%) started,  153 in queue,   24 running]
Running Test flexpepdock
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/flexpepdock/command.sh
Finished flexpepdock                              in 113 seconds	 [~  98 test (39%) started,  152 in queue,   24 running]
Running Test membrane_abinitio
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/membrane_abinitio/command.sh
Finished membrane_abinitio                        in  38 seconds	 [~  99 test (39%) started,  151 in queue,   24 running]
Running Test hotspot_graft
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/hotspot_graft/command.sh
Running Test rotamer_probability
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/rotamer_probability/command.sh
Running Test docking_ensemble
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/docking_ensemble/command.sh
Finished docking_ensemble                         in  57 seconds	 [~ 100 test (40%) started,  150 in queue,   24 running]
Finished rotamer_probability                      in  30 seconds	 [~ 100 test (40%) started,  150 in queue,   23 running]
Finished hotspot_graft                            in  29 seconds	 [~ 100 test (40%) started,  150 in queue,   22 running]
Running Test remodel
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/remodel/command.sh
Finished remodel                                  in 142 seconds	 [~ 103 test (41%) started,  147 in queue,   24 running]
Running Test density_refine_symm
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/density_refine_symm/command.sh
Running Test docking_site_constraints
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/docking_site_constraints/command.sh
Finished docking_site_constraints                 in  47 seconds	 [~ 104 test (41%) started,  146 in queue,   24 running]
Finished density_refine_symm                      in  17 seconds	 [~ 104 test (41%) started,  146 in queue,   23 running]
Running Test ligand_dock_7cpa
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/ligand_dock_7cpa/command.sh
Finished ligand_dock_7cpa                         in  37 seconds	 [~ 106 test (42%) started,  144 in queue,   24 running]
Running Test AnchoredDesign
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/AnchoredDesign/command.sh
Running Test docking_distance_constraints
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/docking_distance_constraints/command.sh
Finished AnchoredDesign                           in  43 seconds	 [~ 107 test (42%) started,  143 in queue,   24 running]
Finished docking_distance_constraints             in  39 seconds	 [~ 107 test (42%) started,  143 in queue,   23 running]
Running Test relax_w_allatom_cst
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/relax_w_allatom_cst/command.sh
Finished relax_w_allatom_cst                      in  83 seconds	 [~ 109 test (43%) started,  141 in queue,   24 running]
Running Test docking_local_refine
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/docking_local_refine/command.sh
Finished docking_local_refine                     in  54 seconds	 [~ 110 test (44%) started,  140 in queue,   24 running]
Running Test test1_benchmark
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/test1_benchmark/command.sh
Finished test1_benchmark                          in  43 seconds	 [~ 111 test (44%) started,  139 in queue,   24 running]
Running Test mr_protocols
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/mr_protocols/command.sh
Finished mr_protocols                             in  71 seconds	 [~ 112 test (44%) started,  138 in queue,   24 running]
Running Test rosetta_scripts_loops
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/rosetta_scripts_loops/command.sh
Finished rosetta_scripts_loops                    in 104 seconds	 [~ 113 test (45%) started,  137 in queue,   24 running]
Running Test splice_out
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/splice_out/command.sh
Finished splice_out                               in   0 seconds	 [~ 114 test (45%) started,  136 in queue,   24 running]
Running Test ThreadingInputter
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/ThreadingInputter/command.sh
Finished ThreadingInputter                        in  27 seconds	 [~ 115 test (46%) started,  135 in queue,   24 running]
Running Test FloppyTail
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/FloppyTail/command.sh
Finished FloppyTail                               in  28 seconds	 [~ 116 test (46%) started,  134 in queue,   24 running]
Running Test oop_dock_design
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/oop_dock_design/command.sh
Running Test cluster_alns
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/cluster_alns/command.sh
Finished oop_dock_design                          in  34 seconds	 [~ 117 test (46%) started,  133 in queue,   24 running]
Finished cluster_alns                             in  29 seconds	 [~ 117 test (46%) started,  133 in queue,   23 running]
Running Test hotspot_hashing
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/hotspot_hashing/command.sh
Finished hotspot_hashing                          in 150 seconds	 [~ 119 test (47%) started,  131 in queue,   24 running]
Running Test rna_denovo
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/rna_denovo/command.sh
Finished rna_denovo                               in  31 seconds	 [~ 120 test (48%) started,  130 in queue,   24 running]
Running Test broker
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/broker/command.sh
Finished broker                                   in  30 seconds	 [~ 121 test (48%) started,  129 in queue,   24 running]
Running Test rotamer_recovery
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/rotamer_recovery/command.sh
Finished rotamer_recovery                         in  27 seconds	 [~ 122 test (48%) started,  128 in queue,   24 running]
Running Test zinc_heterodimer
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/zinc_heterodimer/command.sh
Finished zinc_heterodimer                         in  45 seconds	 [~ 123 test (49%) started,  127 in queue,   24 running]
Running Test pepspec
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/pepspec/command.sh
Finished pepspec                                  in  26 seconds	 [~ 124 test (49%) started,  126 in queue,   24 running]
Running Test rna_helix
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/rna_helix/command.sh
Finished rna_helix                                in  12 seconds	 [~ 125 test (50%) started,  125 in queue,   24 running]
Running Test UBQ_Gp_CYD-CYD
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/UBQ_Gp_CYD-CYD/command.sh
Finished UBQ_Gp_CYD-CYD                           in  23 seconds	 [~ 126 test (50%) started,  124 in queue,   24 running]
Running Test batch_relax
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/batch_relax/command.sh
Finished batch_relax                              in  46 seconds	 [~ 127 test (50%) started,  123 in queue,   24 running]
Running Test UBQ_E2_thioester
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/UBQ_E2_thioester/command.sh
Finished UBQ_E2_thioester                         in  34 seconds	 [~ 128 test (51%) started,  122 in queue,   24 running]
Running Test docking_full_protocol
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/docking_full_protocol/command.sh
Finished docking_full_protocol                    in  35 seconds	 [~ 129 test (51%) started,  121 in queue,   24 running]
Running Test match
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/match/command.sh
Finished match                                    in 176 seconds	 [~ 130 test (52%) started,  120 in queue,   24 running]
Running Test SnugDock
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/SnugDock/command.sh
Finished SnugDock                                 in  60 seconds	 [~ 131 test (52%) started,  119 in queue,   24 running]
Running Test KIC_vicinity
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/KIC_vicinity/command.sh
Running Test fast_relax
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/fast_relax/command.sh
Finished fast_relax                               in  66 seconds	 [~ 132 test (52%) started,  118 in queue,   24 running]
Finished KIC_vicinity                             in  48 seconds	 [~ 132 test (52%) started,  118 in queue,   23 running]
Running Test pmut_scan
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/pmut_scan/command.sh
Finished pmut_scan                                in  53 seconds	 [~ 134 test (53%) started,  116 in queue,   24 running]
Running Test backrub_pilot
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/backrub_pilot/command.sh
Finished backrub_pilot                            in  39 seconds	 [~ 135 test (54%) started,  115 in queue,   24 running]
Running Test rs_flexbbmoves
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/rs_flexbbmoves/command.sh
Finished rs_flexbbmoves                           in  26 seconds	 [~ 136 test (54%) started,  114 in queue,   24 running]
Running Test molfile_to_params
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/molfile_to_params/command.sh
Finished molfile_to_params                        in  21 seconds	 [~ 137 test (54%) started,  113 in queue,   24 running]
Running Test loop_modeling
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/loop_modeling/command.sh
Running Test symmetry_multicomponent
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/symmetry_multicomponent/command.sh
Finished symmetry_multicomponent                  in  33 seconds	 [~ 138 test (55%) started,  112 in queue,   24 running]
Finished loop_modeling                            in  29 seconds	 [~ 138 test (55%) started,  112 in queue,   23 running]
Running Test ligand_dock_grid
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/ligand_dock_grid/command.sh
Finished ligand_dock_grid                         in  11 seconds	 [~ 140 test (56%) started,  110 in queue,   24 running]
Running Test torsion_restricted_sampling
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/torsion_restricted_sampling/command.sh
Finished torsion_restricted_sampling              in  43 seconds	 [~ 141 test (56%) started,  109 in queue,   24 running]
Running Test UBQ_E2_thioester_extra_bodies
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/UBQ_E2_thioester_extra_bodies/command.sh
Finished UBQ_E2_thioester_extra_bodies            in  48 seconds	 [~ 142 test (56%) started,  108 in queue,   24 running]
Running Test UBQ_Gp_LYX-Cterm
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/UBQ_Gp_LYX-Cterm/command.sh
Finished UBQ_Gp_LYX-Cterm                         in  30 seconds	 [~ 143 test (57%) started,  107 in queue,   24 running]
Running Test score12_docking
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/score12_docking/command.sh
Finished score12_docking                          in  21 seconds	 [~ 144 test (57%) started,  106 in queue,   24 running]
Running Test fold_cst_new
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/fold_cst_new/command.sh
Finished fold_cst_new                             in  23 seconds	 [~ 145 test (58%) started,  105 in queue,   24 running]
Running Test nonideal_rtmin
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/nonideal_rtmin/command.sh
Finished nonideal_rtmin                           in  88 seconds	 [~ 146 test (58%) started,  104 in queue,   24 running]
Running Test features
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/features/command.sh
Finished features                                 in  24 seconds	 [~ 147 test (58%) started,  103 in queue,   24 running]
Running Test metalloprotein_abrelax
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/metalloprotein_abrelax/command.sh
Finished metalloprotein_abrelax                   in  19 seconds	 [~ 148 test (59%) started,  102 in queue,   24 running]
Running Test next_generation_KIC
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/next_generation_KIC/command.sh
Running Test docking_ensemble_prepack
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/docking_ensemble_prepack/command.sh
Finished next_generation_KIC                      in  44 seconds	 [~ 149 test (59%) started,  101 in queue,   24 running]
Finished docking_ensemble_prepack                 in  23 seconds	 [~ 149 test (59%) started,  101 in queue,   23 running]
Running Test broker_membrane
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/broker_membrane/command.sh
Finished broker_membrane                          in  17 seconds	 [~ 151 test (60%) started,   99 in queue,   24 running]
Running Test inv_kin_lig_loop_design
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/inv_kin_lig_loop_design/command.sh
Finished inv_kin_lig_loop_design                  in  26 seconds	 [~ 152 test (60%) started,   98 in queue,   24 running]
Running Test flexpepdock_abinitio
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/flexpepdock_abinitio/command.sh
Finished flexpepdock_abinitio                     in  31 seconds	 [~ 153 test (61%) started,   97 in queue,   24 running]
Running Test beta_strand_homodimer
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/beta_strand_homodimer/command.sh
Finished beta_strand_homodimer                    in  44 seconds	 [~ 154 test (61%) started,   96 in queue,   24 running]
Running Test abinitio
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/abinitio/command.sh
Finished abinitio                                 in  18 seconds	 [~ 155 test (62%) started,   95 in queue,   24 running]
Running Test residue_energy_breakdown
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/residue_energy_breakdown/command.sh
Finished residue_energy_breakdown                 in  44 seconds	 [~ 156 test (62%) started,   94 in queue,   24 running]
Running Test mm_params
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/mm_params/command.sh
Finished mm_params                                in  17 seconds	 [~ 157 test (62%) started,   93 in queue,   24 running]
Running Test backrub
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/backrub/command.sh
Finished backrub                                  in  25 seconds	 [~ 158 test (63%) started,   92 in queue,   24 running]
Running Test fixbb
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/fixbb/command.sh
Finished fixbb                                    in  34 seconds	 [~ 159 test (63%) started,   91 in queue,   24 running]
Running Test rna_assemble
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/rna_assemble/command.sh
Finished rna_assemble                             in  15 seconds	 [~ 160 test (64%) started,   90 in queue,   24 running]
Running Test sequence_recovery
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/sequence_recovery/command.sh
Finished sequence_recovery                        in  17 seconds	 [~ 161 test (64%) started,   89 in queue,   24 running]
Running Test resource_database_tables
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/resource_database_tables/command.sh
Finished resource_database_tables                 in  12 seconds	 [~ 162 test (64%) started,   88 in queue,   24 running]
Running Test database_jd2_io
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/database_jd2_io/command.sh
Finished database_jd2_io                          in   7 seconds	 [~ 163 test (65%) started,   87 in queue,   24 running]
Running Test oop_design
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/oop_design/command.sh
Finished oop_design                               in  46 seconds	 [~ 164 test (65%) started,   86 in queue,   24 running]
Running Test score_only_silence
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/score_only_silence/command.sh
Finished score_only_silence                       in  12 seconds	 [~ 165 test (66%) started,   85 in queue,   24 running]
Running Test sequence_profile_constraints
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/sequence_profile_constraints/command.sh
Finished sequence_profile_constraints             in  20 seconds	 [~ 166 test (66%) started,   84 in queue,   24 running]
Running Test make_rot_lib
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/make_rot_lib/command.sh
Finished make_rot_lib                             in  11 seconds	 [~ 167 test (66%) started,   83 in queue,   24 running]
Running Test gen_apo_grids
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/gen_apo_grids/command.sh
Finished gen_apo_grids                            in  14 seconds	 [~ 168 test (67%) started,   82 in queue,   24 running]
Running Test resource_database_locator
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/resource_database_locator/command.sh
Finished resource_database_locator                in  12 seconds	 [~ 169 test (67%) started,   81 in queue,   24 running]
Running Test test_computed_saxs_spectrum
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/test_computed_saxs_spectrum/command.sh
Running Test Enzrevert_xml
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/Enzrevert_xml/command.sh
Finished Enzrevert_xml                            in  22 seconds	 [~ 170 test (68%) started,   80 in queue,   24 running]
Finished test_computed_saxs_spectrum              in  15 seconds	 [~ 170 test (68%) started,   80 in queue,   23 running]
Running Test assemble_domains_jd2
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/assemble_domains_jd2/command.sh
Finished assemble_domains_jd2                     in  17 seconds	 [~ 172 test (68%) started,   78 in queue,   24 running]
Running Test jscore
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/jscore/command.sh
Finished jscore                                   in  12 seconds	 [~ 173 test (69%) started,   77 in queue,   24 running]
Running Test hbonds_sp2
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/hbonds_sp2/command.sh
Finished hbonds_sp2                               in  38 seconds	 [~ 174 test (69%) started,   76 in queue,   24 running]
Running Test zinc_homodimer_setup
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/zinc_homodimer_setup/command.sh
Finished zinc_homodimer_setup                     in  11 seconds	 [~ 175 test (70%) started,   75 in queue,   24 running]
Running Test hbs_design
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/hbs_design/command.sh
Finished hbs_design                               in  66 seconds	 [~ 176 test (70%) started,   74 in queue,   24 running]
Running Test UBQ_E2_thioester_two_ubiquitins
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/UBQ_E2_thioester_two_ubiquitins/command.sh
Finished UBQ_E2_thioester_two_ubiquitins          in  12 seconds	 [~ 177 test (70%) started,   73 in queue,   24 running]
Running Test simple_dna_test
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/simple_dna_test/command.sh
Finished simple_dna_test                          in  24 seconds	 [~ 178 test (71%) started,   72 in queue,   24 running]
Running Test AnchoredPDBCreator
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/AnchoredPDBCreator/command.sh
Finished AnchoredPDBCreator                       in  13 seconds	 [~ 179 test (71%) started,   71 in queue,   24 running]
Running Test test_idealize
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/test_idealize/command.sh
Finished test_idealize                            in   8 seconds	 [~ 180 test (72%) started,   70 in queue,   24 running]
Running Test InterfaceAnalyzer_resfile
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/InterfaceAnalyzer_resfile/command.sh
Running Test startfrom_file
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/startfrom_file/command.sh
Finished startfrom_file                           in  11 seconds	 [~ 181 test (72%) started,   69 in queue,   24 running]
Finished InterfaceAnalyzer_resfile                in   9 seconds	 [~ 181 test (72%) started,   69 in queue,   23 running]
Running Test vip
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/vip/command.sh
Finished vip                                      in  13 seconds	 [~ 183 test (73%) started,   67 in queue,   24 running]
Running Test metropolis_hastings
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/metropolis_hastings/command.sh
Finished metropolis_hastings                      in  10 seconds	 [~ 184 test (73%) started,   66 in queue,   24 running]
Running Test metalloprotein_broker
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/metalloprotein_broker/command.sh
Finished metalloprotein_broker                    in   7 seconds	 [~ 185 test (74%) started,   65 in queue,   24 running]
Running Test filter_termini_near_interface
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/filter_termini_near_interface/command.sh
Finished filter_termini_near_interface            in  11 seconds	 [~ 186 test (74%) started,   64 in queue,   24 running]
Running Test ddG_of_mutation
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/ddG_of_mutation/command.sh
Running Test splice_in
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/splice_in/command.sh
Running Test orbitals
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/orbitals/command.sh
Finished ddG_of_mutation                          in 208 seconds	 [~ 187 test (74%) started,   63 in queue,   24 running]
Finished splice_in                                in  33 seconds	 [~ 187 test (74%) started,   63 in queue,   23 running]
Finished orbitals                                 in   9 seconds	 [~ 187 test (74%) started,   63 in queue,   22 running]
Running Test AlterSpecDisruption
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/AlterSpecDisruption/command.sh
Finished AlterSpecDisruption                      in  49 seconds	 [~ 190 test (76%) started,   60 in queue,   24 running]
Running Test score_jd2
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/score_jd2/command.sh
Finished score_jd2                                in  10 seconds	 [~ 191 test (76%) started,   59 in queue,   24 running]
Running Test zinc_homodimer_design
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/zinc_homodimer_design/command.sh
Finished zinc_homodimer_design                    in  13 seconds	 [~ 192 test (76%) started,   58 in queue,   24 running]
Running Test pocket_measure
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/pocket_measure/command.sh
Finished pocket_measure                           in  16 seconds	 [~ 193 test (77%) started,   57 in queue,   24 running]
Running Test hshash_utils
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/hshash_utils/command.sh
Finished hshash_utils                             in   7 seconds	 [~ 194 test (77%) started,   56 in queue,   24 running]
Running Test classic_relax_1a19
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/classic_relax_1a19/command.sh
Running Test min_pack_min
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/min_pack_min/command.sh
Running Test KIC_refine
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/KIC_refine/command.sh
Finished KIC_refine                               in  43 seconds	 [~ 195 test (78%) started,   55 in queue,   24 running]
Finished classic_relax_1a19                       in  17 seconds	 [~ 195 test (78%) started,   55 in queue,   23 running]
Finished min_pack_min                             in  16 seconds	 [~ 195 test (78%) started,   55 in queue,   22 running]
Running Test symmetric_docking
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/symmetric_docking/command.sh
Finished symmetric_docking                        in  14 seconds	 [~ 198 test (79%) started,   52 in queue,   24 running]
Running Test grid_scores_features
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/grid_scores_features/command.sh
Finished grid_scores_features                     in   7 seconds	 [~ 199 test (79%) started,   51 in queue,   24 running]
Running Test make_symmdef_file
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/make_symmdef_file/command.sh
Finished make_symmdef_file                        in   9 seconds	 [~ 200 test (80%) started,   50 in queue,   24 running]
Running Test hbonds
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/hbonds/command.sh
Finished hbonds                                   in  40 seconds	 [~ 201 test (80%) started,   49 in queue,   24 running]
Running Test ppk
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/ppk/command.sh
Running Test geometric_solvation
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/geometric_solvation/command.sh
Finished geometric_solvation                      in   8 seconds	 [~ 202 test (80%) started,   48 in queue,   24 running]
Finished ppk                                      in   6 seconds	 [~ 202 test (80%) started,   48 in queue,   23 running]
Running Test InterfaceAnalyzer_tracer
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/InterfaceAnalyzer_tracer/command.sh
Running Test pH_mode
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/pH_mode/command.sh
Finished InterfaceAnalyzer_tracer                 in   8 seconds	 [~ 204 test (81%) started,   46 in queue,   24 running]
Finished pH_mode                                  in   6 seconds	 [~ 204 test (81%) started,   46 in queue,   23 running]
Running Test docking_low_res
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/docking_low_res/command.sh
Running Test jrelax
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/jrelax/command.sh
Finished docking_low_res                          in   9 seconds	 [~ 206 test (82%) started,   44 in queue,   24 running]
Finished jrelax                                   in   0 seconds	 [~ 206 test (82%) started,   44 in queue,   23 running]
Running Test InterfaceAnalyzer
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/InterfaceAnalyzer/command.sh
Finished InterfaceAnalyzer                        in   8 seconds	 [~ 208 test (83%) started,   42 in queue,   24 running]
Running Test InterfaceAnalyzer_prepack
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/InterfaceAnalyzer_prepack/command.sh
Finished InterfaceAnalyzer_prepack                in   9 seconds	 [~ 209 test (83%) started,   41 in queue,   24 running]
Running Test minimize_with_elec_dens
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/minimize_with_elec_dens/command.sh
Finished minimize_with_elec_dens                  in   7 seconds	 [~ 210 test (84%) started,   40 in queue,   24 running]
Running Test erraser_minimize
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/erraser_minimize/command.sh
Running Test ig_dump
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/ig_dump/command.sh
Running Test InterfaceAnalyzer_bothpack
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/InterfaceAnalyzer_bothpack/command.sh
Finished InterfaceAnalyzer_bothpack               in  10 seconds	 [~ 211 test (84%) started,   39 in queue,   24 running]
Finished ig_dump                                  in   7 seconds	 [~ 211 test (84%) started,   39 in queue,   23 running]
Finished erraser_minimize                         in   5 seconds	 [~ 211 test (84%) started,   39 in queue,   22 running]
Running Test favor_native_residue
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/favor_native_residue/command.sh
Finished favor_native_residue                     in  11 seconds	 [~ 214 test (85%) started,   36 in queue,   24 running]
Running Test per_residue_energies
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/per_residue_energies/command.sh
Finished per_residue_energies                     in   8 seconds	 [~ 215 test (86%) started,   35 in queue,   24 running]
Running Test rosetta_scripts_setup
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/rosetta_scripts_setup/command.sh
Finished rosetta_scripts_setup                    in   5 seconds	 [~ 216 test (86%) started,   34 in queue,   24 running]
Running Test docking_prepack
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/docking_prepack/command.sh
Finished docking_prepack                          in  12 seconds	 [~ 217 test (86%) started,   33 in queue,   24 running]
Running Test pepspec_anchor_dock
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/pepspec_anchor_dock/command.sh
Finished pepspec_anchor_dock                      in   5 seconds	 [~ 218 test (87%) started,   32 in queue,   24 running]
Running Test super_aln
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/super_aln/command.sh
Finished super_aln                                in   6 seconds	 [~ 219 test (87%) started,   31 in queue,   24 running]
Running Test fold_and_dock
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/fold_and_dock/command.sh
Finished fold_and_dock                            in   8 seconds	 [~ 220 test (88%) started,   30 in queue,   24 running]
Running Test hotspot_stub_constraints
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/hotspot_stub_constraints/command.sh
Running Test cluster
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/cluster/command.sh
Finished hotspot_stub_constraints                 in   9 seconds	 [~ 221 test (88%) started,   29 in queue,   24 running]
Finished cluster                                  in   7 seconds	 [~ 221 test (88%) started,   29 in queue,   23 running]
Running Test residue_data_resource
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/residue_data_resource/command.sh
Finished residue_data_resource                    in   7 seconds	 [~ 223 test (89%) started,   27 in queue,   24 running]
Running Test oop_create
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/oop_create/command.sh
Finished oop_create                               in   6 seconds	 [~ 224 test (89%) started,   26 in queue,   24 running]
Running Test sequence_tolerance
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/sequence_tolerance/command.sh
Running Test InterfaceAnalyzer_allscores
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/InterfaceAnalyzer_allscores/command.sh
Finished InterfaceAnalyzer_allscores              in   9 seconds	 [~ 225 test (90%) started,   25 in queue,   24 running]
Finished sequence_tolerance                       in   9 seconds	 [~ 225 test (90%) started,   25 in queue,   23 running]
Running Test unfolded_state_energy_calc
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/unfolded_state_energy_calc/command.sh
Finished unfolded_state_energy_calc               in   5 seconds	 [~ 227 test (90%) started,   23 in queue,   24 running]
Running Test symmetry_data_resource
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/symmetry_data_resource/command.sh
Finished symmetry_data_resource                   in   5 seconds	 [~ 228 test (91%) started,   22 in queue,   24 running]
Running Test jd2test
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/jd2test/command.sh
Finished jd2test                                  in   6 seconds	 [~ 229 test (91%) started,   21 in queue,   24 running]
Running Test silent2frag
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/silent2frag/command.sh
Running Test rotamer_recovery_compare_two_structures
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/rotamer_recovery_compare_two_structures/command.sh
Running Test posttranslationalmod_io
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/posttranslationalmod_io/command.sh
Finished silent2frag                              in   5 seconds	 [~ 230 test (92%) started,   20 in queue,   24 running]
Finished rotamer_recovery_compare_two_structures  in   5 seconds	 [~ 230 test (92%) started,   20 in queue,   23 running]
Finished posttranslationalmod_io                  in   4 seconds	 [~ 230 test (92%) started,   20 in queue,   22 running]
Running Test loop_creation
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/loop_creation/command.sh
Finished loop_creation                            in   7 seconds	 [~ 233 test (93%) started,   17 in queue,   24 running]
Running Test noe_assignment
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/noe_assignment/command.sh
Running Test features_pdb
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/features_pdb/command.sh
Finished noe_assignment                           in   8 seconds	 [~ 234 test (93%) started,   16 in queue,   24 running]
Finished features_pdb                             in   4 seconds	 [~ 234 test (93%) started,   16 in queue,   23 running]
Running Test extract_atomtree_diffs
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/extract_atomtree_diffs/command.sh
Running Test select_best_unique_ligand_poses
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/select_best_unique_ligand_poses/command.sh
Finished extract_atomtree_diffs                   in   7 seconds	 [~ 236 test (94%) started,   14 in queue,   24 running]
Finished select_best_unique_ligand_poses          in   6 seconds	 [~ 236 test (94%) started,   14 in queue,   23 running]
Running Test fragment_picker
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/fragment_picker/command.sh
Finished fragment_picker                          in   8 seconds	 [~ 238 test (95%) started,   12 in queue,   24 running]
Running Test ncaa_fixbb
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/ncaa_fixbb/command.sh
Finished ncaa_fixbb                               in   6 seconds	 [~ 239 test (95%) started,   11 in queue,   24 running]
Running Test rna_cluster
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/rna_cluster/command.sh
Finished rna_cluster                              in   1 seconds	 [~ 240 test (96%) started,   10 in queue,   24 running]
Running Test report_hbonds_for_plugin
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/report_hbonds_for_plugin/command.sh
Finished report_hbonds_for_plugin                 in   4 seconds	 [~ 241 test (96%) started,    9 in queue,   24 running]
Running Test fix_alignment_to_match_pdb
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/fix_alignment_to_match_pdb/command.sh
Finished fix_alignment_to_match_pdb               in   6 seconds	 [~ 242 test (96%) started,    8 in queue,   24 running]
Running Test ld_converter
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/ld_converter/command.sh
Running Test rna_score
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/rna_score/command.sh
Finished ld_converter                             in   4 seconds	 [~ 243 test (97%) started,    7 in queue,   24 running]
Finished rna_score                                in   2 seconds	 [~ 243 test (97%) started,    7 in queue,   23 running]
Running Test fragmentpicker_integration_demo
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/fragmentpicker_integration_demo/command.sh
Running Test features_scientific_benchmark
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/features_scientific_benchmark/command.sh
Running Test score_aln
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/score_aln/command.sh
Finished fragmentpicker_integration_demo          in   6 seconds	 [~ 245 test (98%) started,    5 in queue,   24 running]
Finished score_aln                                in   0 seconds	 [~ 245 test (98%) started,    5 in queue,   23 running]
Finished features_scientific_benchmark            in   0 seconds	 [~ 245 test (98%) started,    5 in queue,   22 running]
Running Test features_postgres
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/features_postgres/command.sh
Finished features_postgres                        in   0 seconds	 [~ 248 test (99%) started,    2 in queue,   24 running]
Running Test hierarchical_clustering
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/hierarchical_clustering/command.sh
Running Test combine_silent
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/combine_silent/command.sh
Finished combine_silent                           in   1 seconds	 [~ 249 test (99%) started,    1 in queue,   24 running]
Finished hierarchical_clustering                  in   0 seconds	 [~ 249 test (99%) started,    1 in queue,   23 running]
Running Test RescoreSAXS
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/RescoreSAXS/command.sh
Running Test HOW_TO_MAKE_TESTS
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/HOW_TO_MAKE_TESTS/command.sh
Running Test file_list_locator
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/file_list_locator/command.sh
Running Test swa_rna_loop_clusterer
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/swa_rna_loop_clusterer/command.sh
Running Test crossaln
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/crossaln/command.sh
Running Test extract_pdbs
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/extract_pdbs/command.sh
Running Test database_session_resource
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/database_session_resource/command.sh
Running Test docking_local_refine_min
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/docking_local_refine_min/command.sh
Running Test cstfile_to_theozyme_pdb
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/cstfile_to_theozyme_pdb/command.sh
Running Test loop_hash
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/loop_hash/command.sh
Running Test fixbb_resource_manager
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/fixbb_resource_manager/command.sh
Running Test centroid_disulfide_scores
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/centroid_disulfide_scores/command.sh
Running Test angle_recovery_stats
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/angle_recovery_stats/command.sh
Running Test r_rmsf
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/r_rmsf/command.sh
Running Test distances
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/distances/command.sh
Running Test mpi_multistate_design
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/mpi_multistate_design/command.sh
Running Test features_database_schema
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/features_database_schema/command.sh
Running Test darc
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/darc/command.sh
Running Test BuildPeptide
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/BuildPeptide/command.sh
Running Test gen_lig_grids
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/gen_lig_grids/command.sh
Running Test r_pdb2top
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/r_pdb2top/command.sh
Running Test RescorePDDF
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/RescorePDDF/command.sh
Running Test carbohydrates
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/carbohydrates/command.sh
Running Test features_parallel
ulimit -t 480 && bash /home/benchmark/svd.64.git/rosetta/main/tests/integration/new/features_parallel/command.sh
Finished file_list_locator                        in   6 seconds	 [~ 250 test (100%) started,    0 in queue,   23 running]
Finished RescoreSAXS                              in   0 seconds	 [~ 250 test (100%) started,    0 in queue,   22 running]
Finished HOW_TO_MAKE_TESTS                        in   0 seconds	 [~ 250 test (100%) started,    0 in queue,   21 running]
Finished swa_rna_loop_clusterer                   in   1 seconds	 [~ 250 test (100%) started,    0 in queue,   20 running]
Finished extract_pdbs                             in   0 seconds	 [~ 250 test (100%) started,    0 in queue,   19 running]
Finished crossaln                                 in   0 seconds	 [~ 250 test (100%) started,    0 in queue,   18 running]
Finished docking_local_refine_min                 in   6 seconds	 [~ 250 test (100%) started,    0 in queue,   17 running]
Finished database_session_resource                in   6 seconds	 [~ 250 test (100%) started,    0 in queue,   16 running]
Finished cstfile_to_theozyme_pdb                  in   3 seconds	 [~ 250 test (100%) started,    0 in queue,   15 running]
Finished fixbb_resource_manager                   in   4 seconds	 [~ 250 test (100%) started,    0 in queue,   14 running]
Finished centroid_disulfide_scores                in   3 seconds	 [~ 250 test (100%) started,    0 in queue,   13 running]
Finished loop_hash                                in   2 seconds	 [~ 250 test (100%) started,    0 in queue,   12 running]
Finished mpi_multistate_design                    in  12 seconds	 [~ 250 test (100%) started,    0 in queue,   11 running]
Finished distances                                in   5 seconds	 [~ 250 test (100%) started,    0 in queue,   10 running]
Finished angle_recovery_stats                     in   4 seconds	 [~ 250 test (100%) started,    0 in queue,    9 running]
Finished r_rmsf                                   in   3 seconds	 [~ 250 test (100%) started,    0 in queue,    8 running]
Finished features_database_schema                 in   3 seconds	 [~ 250 test (100%) started,    0 in queue,    7 running]
Finished darc                                     in   7 seconds	 [~ 250 test (100%) started,    0 in queue,    6 running]
Finished BuildPeptide                             in   3 seconds	 [~ 250 test (100%) started,    0 in queue,    5 running]
Finished gen_lig_grids                            in   5 seconds	 [~ 250 test (100%) started,    0 in queue,    4 running]
Finished r_pdb2top                                in   4 seconds	 [~ 250 test (100%) started,    0 in queue,    3 running]
Finished RescorePDDF                              in   5 seconds	 [~ 250 test (100%) started,    0 in queue,    2 running]
Finished carbohydrates                            in   3 seconds	 [~ 250 test (100%) started,    0 in queue,    1 running]
Finished features_parallel                        in   5 seconds	 [~ 250 test (100%) started,    0 in queue,    0 running]

ok   write_mol_file
ok   swm_singleloop
ok   swm_nickedhelix
ok   swm_loop_design
ok   swm_fourwayjunction
ok   sweep_respair_energies
ok   swa_rna_gagu_23_append_and_kic_close
ok   swa_rna_gagu_22_prepend_and_kic_close
ok   swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump
ok   swa_rna_gagu_20_append_floating_base_by_jump
ok   swa_rna_gagu_19_prepend_floating_base_by_jump
ok   swa_rna_gagu_18_rebuild_bulge
ok   swa_rna_gagu_17_append_floating_base
ok   swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide
ok   swa_rna_gagu_15_combine_long_loop_sampling
ok   swa_rna_gagu_14_combine_long_loop_filtering
ok   swa_rna_gagu_13_chunk_combination_and_closure
ok   swa_rna_gagu_12_helix_addition
ok   swa_rna_gagu_11_append_and_ccd_close
ok   swa_rna_gagu_10_prepend_and_ccd_close
ok   swa_rna_gagu_09_sample_virtual_ribose
ok   swa_rna_gagu_08_append_dinucleotide
ok   swa_rna_gagu_07_prepend_dinucleotide
ok   swa_rna_gagu_06_append_to_3primeterminus
ok   swa_rna_gagu_05_prepend_to_5primeterminus
ok   swa_rna_gagu_04_clustering
ok   swa_rna_gagu_03_append_to_silent
ok   swa_rna_gagu_02_prepend
ok   swa_rna_gagu_01_append
ok   swa_rna_erraser
ok   swa_protein_loop_sampler
ok   surface_docking
ok   rosetta_scripts_hbond_options
ok   rna_suitename
ok   remodel_disulfides
ok   remodel
ok   readin_dna_rna_protein
ok   place_simultaneously
ok   phosphonate
ok   ligand_water_docking
ok   hybridization
ok   hts_io
ok   dock_with_hotspot_place_simultaneously
ok   database_jd2_compact_io
ok   contactMap
ok   buried_unsat_kinemage
ok   app_exception_handling
ok   antibody_legacy
ok   antibody_graft
ok   antibody_designer
ok   antibody_H3_legacy
ok   antibody_H3
ok   add_job_pair_data
ok   ProQ
ok   inverse_rotamer_remodel
ok   pocket_relax
ok   motif_dna_packer_design
ok   match
ok   ligand_database_io
ok   membrane_relax
ok   ligand_dock_script
ok   supercharge
ok   hotspot_hashing
ok   enzdes
ok   rs_loophash
ok   density_refine
ok   flexpepdock
ok   dna_interface_design
ok   ddG_of_mutation
ok   kinemage_grid_output
ok   AnchorFinder
ok   ligand_motif_design
ok   rosetta_scripts_loops
ok   doug_dock_design_min_mod2_cal_cal
ok   relax_w_allatom_cst
ok   kinematic_looprelax
ok   docking_ensemble
ok   swa_rna_loop_sampler
ok   mr_protocols
ok   rna_minimize
ok   docking_site_constraints
ok   rna_design
ok   membrane_abinitio
ok   docking_local_refine
ok   AnchoredDesign
ok   rotamer_probability
ok   ligand_dock_7cpa
ok   hotspot_graft
ok   docking_distance_constraints
ok   test1_benchmark
ok   repack_with_elec_dens
ok   nonideal_rtmin
ok   density_refine_symm
ok   fast_relax
ok   SnugDock
ok   zinc_heterodimer
ok   oop_dock_design
ok   batch_relax
ok   ThreadingInputter
ok   FloppyTail
ok   rna_denovo
ok   pmut_scan
ok   cluster_alns
ok   broker
ok   KIC_vicinity
ok   rotamer_recovery
ok   pepspec
ok   docking_full_protocol
ok   UBQ_E2_thioester
ok   backrub_pilot
ok   UBQ_E2_thioester_extra_bodies
ok   torsion_restricted_sampling
ok   splice_out
ok   UBQ_Gp_CYD-CYD
ok   symmetry_multicomponent
ok   rs_flexbbmoves
ok   rna_helix
ok   next_generation_KIC
ok   loop_modeling
ok   hbs_design
ok   beta_strand_homodimer
ok   residue_energy_breakdown
ok   molfile_to_params
ok   UBQ_Gp_LYX-Cterm
ok   oop_design
ok   fold_cst_new
ok   flexpepdock_abinitio
ok   features
ok   score12_docking
ok   inv_kin_lig_loop_design
ok   ligand_dock_grid
ok   fixbb
ok   docking_ensemble_prepack
ok   AlterSpecDisruption
ok   metalloprotein_abrelax
ok   hbonds_sp2
ok   broker_membrane
ok   backrub
ok   abinitio
ok   KIC_refine
ok   mm_params
ok   hbonds
ok   Enzrevert_xml
ok   sequence_profile_constraints
ok   splice_in
ok   sequence_recovery
ok   rna_assemble
ok   simple_dna_test
ok   resource_database_tables
ok   gen_apo_grids
ok   assemble_domains_jd2
ok   test_computed_saxs_spectrum
ok   score_only_silence
ok   resource_database_locator
ok   make_rot_lib
ok   jscore
ok   database_jd2_io
ok   UBQ_E2_thioester_two_ubiquitins
ok   AnchoredPDBCreator
ok   zinc_homodimer_setup
ok   vip
ok   startfrom_file
ok   pocket_measure
ok   classic_relax_1a19
ok   min_pack_min
ok   metropolis_hastings
ok   filter_termini_near_interface
ok   InterfaceAnalyzer_resfile
ok   zinc_homodimer_design
ok   test_idealize
ok   symmetric_docking
ok   score_jd2
ok   orbitals
ok   metalloprotein_broker
ok   make_symmdef_file
ok   hshash_utils
ok   grid_scores_features
ok   geometric_solvation
ok   favor_native_residue
ok   docking_prepack
ok   docking_low_res
ok   InterfaceAnalyzer_tracer
ok   InterfaceAnalyzer_prepack
ok   InterfaceAnalyzer_bothpack
ok   InterfaceAnalyzer
ok   ppk
ok   per_residue_energies
ok   pH_mode
ok   minimize_with_elec_dens
ok   ig_dump
ok   hotspot_stub_constraints
ok   fold_and_dock
ok   erraser_minimize
ok   cluster
ok   InterfaceAnalyzer_allscores
ok   super_aln
ok   sequence_tolerance
ok   rosetta_scripts_setup
ok   residue_data_resource
ok   pepspec_anchor_dock
ok   oop_create
ok   noe_assignment
ok   mpi_multistate_design
ok   loop_creation
ok   jrelax
ok   jd2test
ok   fragment_picker
ok   extract_atomtree_diffs
ok   unfolded_state_energy_calc
ok   symmetry_data_resource
ok   silent2frag
ok   select_best_unique_ligand_poses
ok   rotamer_recovery_compare_two_structures
ok   posttranslationalmod_io
ok   ncaa_fixbb
ok   fragmentpicker_integration_demo
ok   fix_alignment_to_match_pdb
ok   file_list_locator
ok   features_pdb
ok   docking_local_refine_min
ok   database_session_resource
ok   darc
ok   report_hbonds_for_plugin
ok   ld_converter
ok   gen_lig_grids
ok   fixbb_resource_manager
ok   distances
ok   cstfile_to_theozyme_pdb
ok   centroid_disulfide_scores
ok   angle_recovery_stats
ok   RescorePDDF
ok   rna_score
ok   rna_cluster
ok   r_rmsf
ok   r_pdb2top
ok   features_database_schema
ok   BuildPeptide
ok   swa_rna_loop_clusterer
ok   loop_hash
ok   combine_silent
ok   carbohydrates
ok   score_aln
ok   hierarchical_clustering
ok   features_scientific_benchmark
ok   features_postgres
ok   features_parallel
ok   extract_pdbs
ok   crossaln
ok   RescoreSAXS
ok   HOW_TO_MAKE_TESTS
All tests passed.</pre>