The system is: Linux - 3.10.0-862.14.4.el7.x86_64 - x86_64 Compiling the C compiler identification source file "CMakeCCompilerId.c" succeeded. Compiler: /usr/bin/cc Build flags: Id flags: The output was: 0 Compilation of the C compiler identification source "CMakeCCompilerId.c" produced "a.out" The C compiler identification is GNU, found in "/storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/2.8.12.2/CompilerIdC/a.out" Compiling the CXX compiler identification source file "CMakeCXXCompilerId.cpp" succeeded. Compiler: /usr/bin/c++ Build flags: Id flags: The output was: 0 Compilation of the CXX compiler identification source "CMakeCXXCompilerId.cpp" produced "a.out" The CXX compiler identification is GNU, found in "/storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/2.8.12.2/CompilerIdCXX/a.out" Determining if the C compiler works passed with the following output: Change Dir: /storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp Run Build Command:/usr/bin/gmake "cmTryCompileExec3764019513/fast" /usr/bin/gmake -f CMakeFiles/cmTryCompileExec3764019513.dir/build.make CMakeFiles/cmTryCompileExec3764019513.dir/build gmake[1]: Entering directory `/storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp' /usr/bin/cmake -E cmake_progress_report /storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp/CMakeFiles 1 Building C object CMakeFiles/cmTryCompileExec3764019513.dir/testCCompiler.c.o /usr/bin/cc -o CMakeFiles/cmTryCompileExec3764019513.dir/testCCompiler.c.o -c /storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp/testCCompiler.c Linking C executable cmTryCompileExec3764019513 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTryCompileExec3764019513.dir/link.txt --verbose=1 /usr/bin/cc CMakeFiles/cmTryCompileExec3764019513.dir/testCCompiler.c.o -o cmTryCompileExec3764019513 -rdynamic gmake[1]: Leaving directory `/storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp' Detecting C compiler ABI info compiled with the following output: Change Dir: /storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp Run Build Command:/usr/bin/gmake "cmTryCompileExec1970358276/fast" /usr/bin/gmake -f CMakeFiles/cmTryCompileExec1970358276.dir/build.make CMakeFiles/cmTryCompileExec1970358276.dir/build gmake[1]: Entering directory `/storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp' /usr/bin/cmake -E cmake_progress_report /storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp/CMakeFiles 1 Building C object CMakeFiles/cmTryCompileExec1970358276.dir/CMakeCCompilerABI.c.o /usr/bin/cc -o CMakeFiles/cmTryCompileExec1970358276.dir/CMakeCCompilerABI.c.o -c /usr/share/cmake/Modules/CMakeCCompilerABI.c Linking C executable cmTryCompileExec1970358276 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTryCompileExec1970358276.dir/link.txt --verbose=1 /usr/bin/cc -v CMakeFiles/cmTryCompileExec1970358276.dir/CMakeCCompilerABI.c.o -o cmTryCompileExec1970358276 -rdynamic Using built-in specs. COLLECT_GCC=/usr/bin/cc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 4.8.5 20150623 (Red Hat 4.8.5-28) (GCC) COMPILER_PATH=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/:/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.8.5/:/usr/lib/gcc/x86_64-redhat-linux/ LIBRARY_PATH=/usr/lib/gcc/x86_64-redhat-linux/4.8.5/:/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-v' '-o' 'cmTryCompileExec1970358276' '-rdynamic' '-mtune=generic' '-march=x86-64' /usr/libexec/gcc/x86_64-redhat-linux/4.8.5/collect2 --build-id --no-add-needed --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -export-dynamic -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o cmTryCompileExec1970358276 /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtbegin.o -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../.. CMakeFiles/cmTryCompileExec1970358276.dir/CMakeCCompilerABI.c.o -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crtn.o gmake[1]: Leaving directory `/storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp' Parsed C implicit link information from above output: link line regex: [^( *|.*[/\])(ld|([^/\]+-)?ld|collect2)[^/\]*( |$)] ignore line: [Change Dir: /storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp] ignore line: [] ignore line: [Run Build Command:/usr/bin/gmake "cmTryCompileExec1970358276/fast"] ignore line: [/usr/bin/gmake -f CMakeFiles/cmTryCompileExec1970358276.dir/build.make CMakeFiles/cmTryCompileExec1970358276.dir/build] ignore line: [gmake[1]: Entering directory `/storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp'] ignore line: [/usr/bin/cmake -E cmake_progress_report /storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp/CMakeFiles 1] ignore line: [Building C object CMakeFiles/cmTryCompileExec1970358276.dir/CMakeCCompilerABI.c.o] ignore line: [/usr/bin/cc -o CMakeFiles/cmTryCompileExec1970358276.dir/CMakeCCompilerABI.c.o -c /usr/share/cmake/Modules/CMakeCCompilerABI.c] ignore line: [Linking C executable cmTryCompileExec1970358276] ignore line: [/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTryCompileExec1970358276.dir/link.txt --verbose=1] ignore line: [/usr/bin/cc -v CMakeFiles/cmTryCompileExec1970358276.dir/CMakeCCompilerABI.c.o -o cmTryCompileExec1970358276 -rdynamic ] ignore line: [Using built-in specs.] ignore line: [COLLECT_GCC=/usr/bin/cc] ignore line: [COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper] ignore line: [Target: x86_64-redhat-linux] ignore line: [Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux] ignore line: [Thread model: posix] ignore line: [gcc version 4.8.5 20150623 (Red Hat 4.8.5-28) (GCC) ] ignore line: [COMPILER_PATH=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/:/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.8.5/:/usr/lib/gcc/x86_64-redhat-linux/] ignore line: [LIBRARY_PATH=/usr/lib/gcc/x86_64-redhat-linux/4.8.5/:/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../:/lib/:/usr/lib/] ignore line: [COLLECT_GCC_OPTIONS='-v' '-o' 'cmTryCompileExec1970358276' '-rdynamic' '-mtune=generic' '-march=x86-64'] link line: [ /usr/libexec/gcc/x86_64-redhat-linux/4.8.5/collect2 --build-id --no-add-needed --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -export-dynamic -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o cmTryCompileExec1970358276 /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtbegin.o -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../.. CMakeFiles/cmTryCompileExec1970358276.dir/CMakeCCompilerABI.c.o -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crtn.o] arg [/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/collect2] ==> ignore arg [--build-id] ==> ignore arg [--no-add-needed] ==> ignore arg [--eh-frame-hdr] ==> ignore arg [--hash-style=gnu] ==> ignore arg [-m] ==> ignore arg [elf_x86_64] ==> ignore arg [-export-dynamic] ==> ignore arg [-dynamic-linker] ==> ignore arg [/lib64/ld-linux-x86-64.so.2] ==> ignore arg [-o] ==> ignore arg [cmTryCompileExec1970358276] ==> ignore arg [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crt1.o] ==> ignore arg [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crti.o] ==> ignore arg [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtbegin.o] ==> ignore arg [-L/usr/lib/gcc/x86_64-redhat-linux/4.8.5] ==> dir [/usr/lib/gcc/x86_64-redhat-linux/4.8.5] arg [-L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64] ==> dir [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64] arg [-L/lib/../lib64] ==> dir [/lib/../lib64] arg [-L/usr/lib/../lib64] ==> dir [/usr/lib/../lib64] arg [-L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../..] ==> dir [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../..] arg [CMakeFiles/cmTryCompileExec1970358276.dir/CMakeCCompilerABI.c.o] ==> ignore arg [-lgcc] ==> lib [gcc] arg [--as-needed] ==> ignore arg [-lgcc_s] ==> lib [gcc_s] arg [--no-as-needed] ==> ignore arg [-lc] ==> lib [c] arg [-lgcc] ==> lib [gcc] arg [--as-needed] ==> ignore arg [-lgcc_s] ==> lib [gcc_s] arg [--no-as-needed] ==> ignore arg [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtend.o] ==> ignore arg [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crtn.o] ==> ignore remove lib [gcc] remove lib [gcc_s] remove lib [gcc] remove lib [gcc_s] collapse library dir [/usr/lib/gcc/x86_64-redhat-linux/4.8.5] ==> [/usr/lib/gcc/x86_64-redhat-linux/4.8.5] collapse library dir [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64] ==> [/usr/lib64] collapse library dir [/lib/../lib64] ==> [/lib64] collapse library dir [/usr/lib/../lib64] ==> [/usr/lib64] collapse library dir [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../..] ==> [/usr/lib] implicit libs: [c] implicit dirs: [/usr/lib/gcc/x86_64-redhat-linux/4.8.5;/usr/lib64;/lib64;/usr/lib] implicit fwks: [] Determining if the CXX compiler works passed with the following output: Change Dir: /storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp Run Build Command:/usr/bin/gmake "cmTryCompileExec4023277585/fast" /usr/bin/gmake -f CMakeFiles/cmTryCompileExec4023277585.dir/build.make CMakeFiles/cmTryCompileExec4023277585.dir/build gmake[1]: Entering directory `/storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp' /usr/bin/cmake -E cmake_progress_report /storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp/CMakeFiles 1 Building CXX object CMakeFiles/cmTryCompileExec4023277585.dir/testCXXCompiler.cxx.o /usr/bin/c++ -o CMakeFiles/cmTryCompileExec4023277585.dir/testCXXCompiler.cxx.o -c /storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp/testCXXCompiler.cxx Linking CXX executable cmTryCompileExec4023277585 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTryCompileExec4023277585.dir/link.txt --verbose=1 /usr/bin/c++ CMakeFiles/cmTryCompileExec4023277585.dir/testCXXCompiler.cxx.o -o cmTryCompileExec4023277585 -rdynamic gmake[1]: Leaving directory `/storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp' Detecting CXX compiler ABI info compiled with the following output: Change Dir: /storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp Run Build Command:/usr/bin/gmake "cmTryCompileExec2811254644/fast" /usr/bin/gmake -f CMakeFiles/cmTryCompileExec2811254644.dir/build.make CMakeFiles/cmTryCompileExec2811254644.dir/build gmake[1]: Entering directory `/storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp' /usr/bin/cmake -E cmake_progress_report /storage/htc/bdm/tianqi/DNCON4/CCMpred/CMakeFiles/CMakeTmp/CMakeFiles 1 Building CXX object CMakeFiles/cmTryCompileExec2811254644.dir/CMakeCXXCompilerABI.cpp.o /usr/bin/c++ -o CMakeFiles/cmTryCompileExec2811254644.dir/CMakeCXXCompilerABI.cpp.o -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp Linking CXX executable cmTryCompileExec2811254644 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTryCompileExec2811254644.dir/link.txt --verbose=1 /usr/bin/c++ -v CMakeFiles/cmTryCompileExec2811254644.dir/CMakeCXXCompilerABI.cpp.o -o cmTryCompileExec2811254644 -rdynamic Using built-in specs. 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