ELF>@@ HDDɿZZZZ1HAWILAVAUATUSHFDfHt$8ÉD$0H Ѓi))1HcHhAD$Lcl$0H$L|$HD$*J,|$4)|$ fEDŽ$fofT$@fT$PfT$`fT$pf$~*HD$8HT$H1 LD@D9u(L$ [D$@L$^)$[D$P^)$[D$`^)$[D$p^)$[$^)$*$^D$4$L|$D$ DAI\D$ AII9uHD$HD$D$9D$0H[]A\A]A^A_H1H$1҃t u HDHfH@u2H1HAVIAUATIUSLHH|IHHt-HLHH<+IULH[]A\A]A^@S1Hu  Q%-4d %-4d %-8g %-8g %-8.8g %-3.3g _____ _____ _____ _ | | | |___ ___ ___ _| || --| --| | | | . | _| -_| . ||_____|_____|_|_|_| _|_| |___|___| version %s |_| | | | |___ ___ ___ _| || --| --| | | | . | _| -_| . ||_____|_____|_|_|_| _|_| |___|___| |_| Usage: %s [options] input.aln output.mat -t THREADS Calculate using THREADS threads on the CPU (automatically disables CUDA if available) [default: 1] -n NUMITER Compute a maximum of NUMITER operations [default: 50] -e EPSILON Set convergence criterion for minimum decrease in the last K iterations to EPSILON [default: 0.01] -k LASTK Set K parameter for convergence criterion to LASTK [default: 5] -i INIFILE Read initial weights from INIFILE -r RAWFILE Store raw prediction matrix in RAWFILE -w IDTHRES Set sequence reweighting identity threshold to IDTHRES [default: 0.8] -l LFACTOR Set pairwise regularization coefficients to LFACTOR * (L-1) [default: 0.2] -A Disable average product correction (APC) -R Re-normalize output matrix to [0,1]ERROR: Not enough memory to allocate variables!Cannot allocate memory for user data! Will optimize %d %ld-bit variables iter eval f(x) ║x║ ║g║ stepMaximum number of iterations reached.0.3.2Cannot malloc new string!Options: -h Display help r:i:n:w:k:e:l:ARh?t:Unknown argumentrCannot open %s! using CPU (%d thread(s)) Done%s with status code %d - Success!Already minimized!Unknown status code! Final fx = %f wCannot open %s for writing! Writing raw output to %s Output can be found in %s ExitAWAVAUAATUHSHHHHILLHHHDHIME1E1A?wHD$HD$%AT$8D$(D$<\$,D$@D$ d$DHD$0I_w6@A$DD$<LHt$IA?wI_vοLHuH|$MLHHHT$pHt$`HHHD$PD$` kiйDi *L$HM )AÉD$L1D$[1D1 HIWHcT$L1L^HL$\L$\(L$\tD$`*YL$D@L$DHHL$DHD$P|$pK,kC( #EALOHLOHOЋt$H1 |$[?|$LH$IALLH,$ AED1EA/ATZ$H|$HI|$`L|$0HD$ ML1LHIT$`LHHL$T$`LHt$ |$@|$<T$`Ht$ LMtLLLHAH|$ LH{HH|$PHHt$11HĘ[]A\A]A^A_D$@H}f.MH|$H|$IGHD$I1ffZl$8bfI 1AHIGHD$02fI 1D$ I1ffZt$DfI 1D$(MoI1ffZ|$,MwIGHD$L1C111Ht$1HLL$DAt$`H|$ It$`H|$ +Ht$01=E1|$8HD$HD$=E1|$,AD$(=D$<|$DD$@D$ HD$0AE1qH}1L? #;intll0+e ( 0 8 @ H P X  c`  ih  ep et sx I W o  &~ / 0 1 2 30 5e 7 ccie2  +   ee e ) 1H2e3ek4e5 6789:>^d Eeeee xxx@ 'msa + / 3e 7e Us( VU(uU ( U(;U~T (VUsTQ(uUs&9(U(:U (_U T|(vU:(Us(U~T0Q ~ $ &2$(a)(bU@&(!U}TsQ~&(FU|3ZUs(U T~Q (3U (U~T~QRX Yswv(U:(8U T Q|(3WU (vU (;U~T &(U T(;UT ($UT~(?:U~T~R~(_ZU|T~(urU(U|(uU|3Us(U~(U~&(  Us( 'U( ?Uv(fU T~(! }T1(U T~(3U (U (3U (U (JU T (qU T~(U~Ts(U (U (3U (U~( U~(GU T~(3fU ! T0H4i4i5je67 m))8e5 ee9j5 !e3e:eL50b5x08;die<e:ee77l e<7 z;e5V7u7e7se7 e)=>r6=>e7\e$eS=?e=_e= ee7e=t=e?apc e% U$ > : ; I$ >   I : ;  : ; I8 : ;I8 : ; I !I/ &I'II& : ;  : ; I8  : ; ( .?: ;'I : ;I.?: ; 'I : ; I.: ; 'I@B: ; I: ; I1B.?: ; '@B4: ; I 4: ; I! " #4: ; I$ U%4: ; I&1'.?: ; I@B(1)B1*B1+.?: ; 'I@B,4: ; I -4: ;I.4: ;I/4: ;I04: ;I11X Y21344: ; I?<5.?: ;'I<67.?: ; 'I<8.?'I4<9.?: ;'I<:.?: ; n'I<;.?: ; '<<.?: ;'<=.?: ; '<>.?: ; I<?.?: ; '<UUTTQQa)b)c)d)RRXXYYU_UT}PS}\Pr` s2$s"2$ }52$pp # rr` s2$s"2$s2$s"2$ # }52$}52$ # ss p p"# t p p"# t r` r"ss r` r"'ss s2$s"2$"s2$s"2$ # -}} }52$"}52$ # U_U0}}#|}0PEDEUUU^U^T\T\PVVP]]PSPSUTUTSU]U]UTVTVTVTV0]~~P~0~~~1\~~10~~0))b~))~))~))~))L>e~~g~L>5~~~5 #<d~~h~ #<P_S_SS___P\PSSPS\\1\\\10]^^00]~~P00]~~P~00]]0L?c~~f~L?PSPSPVVR~~~vv # vv # PS~~S~~PP^^P^^PSSPSSPVVVVP]]]]____P\\Q\\\P\P\\\P~~P0P__P_0<%" /storage/htc/bdm/tianqi/DNCON4/CCMpred/src/usr/include/bits/usr/include/usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/storage/htc/bdm/tianqi/DNCON4/CCMpred/lib/libconjugrad/include/storage/htc/bdm/tianqi/DNCON4/CCMpred/includeccmpred.cstdlib-float.hstdlib.hstddef.htypes.hstdio.hlibio.hconjugrad.hccmpred.hparseopt.hmathcalls.hterm.hunistd.hstring.hsequence.hio.homp.hutil.hcurses.h <:L* Xu<=GZh>,=K;eKA E84;gW`xLjPLuY-]M=W5YZHvfY`xJ Y;=YW=Y;=1 !-/Jc rXZV>;=Y;=];=X;= X9 <zJ\#[ fXf~zfzf3L-XZ>HL.XO;=%f!;YZLV=s-=;KYy7OXu;=}f<}J}Jf[u;=ZNU>o=K;?wYh9KZk .sJsNp kZ.Y h/|Jx}gt0 ȑpt<}dt<sK}XV%X~h J6*c.|>c]"^< ftfbo} printf__off_tisattyshort int_IO_read_ptrmallocoptionnvar_shortbuf/storage/htc/bdm/tianqi/DNCON4/CCMpred/src/ccmpred.csize_tnextmsafilenamemax_iterationsconjugrad_evaluate_terretlambda_single_IO_read_base_IO_buf_baseomp_set_num_threadslong long unsigned intftol_IO_buf_endmsafileexenamematfilenameconjugrad_float_tfreensingleCONJUGRADERR_MAXIMUMITERATIONlong long intsigned charreweighting_thresholduse_normalizationmeta_stepsconjugrad_k_fileno_IO_read_endstrtodlong intstrtol_flagslambda_pairxnorm_cur_columnputchargnormdouble_old_offset_offsetmainoutmat/storage/htc/bdm/tianqi/DNCON4/CCMpredlogfinstancencolconcatlogosetuptermthisOpt_IO_markerstdinunsigned intstrlenlong unsigned intargument_IO_write_ptrconjugrad_init__builtin_putchar_sbufparse_optionshort unsigned intCONJUGRADERR_UNKNOWNrawfilename_IO_save_baseread_rawconjugrad_freeconjugrad_progress_twolfeplmnamelambda_pair_factoraafrac_lock_flags2_modemax_linesearch__isnanfuserdataalpha_mulnumthreadsuse_apcusageputsnumitermin_gnormsizetypeweightsread_msaoptstrparamold_optstrconjugrad_parameter_taasum_IO_lock_t_IO_FILEconjugrad_mallocinit__nptrGNU C 4.8.5 20150623 (Red Hat 4.8.5-28) -mtune=generic -march=x86-64 -g -O3 -std=c99 -fno-strict-aliasing -fopenmpfloatnrowfopen_posfflush_markersconjugradatofatoiinit_bias_Booldetect_colorsunsigned charprogressstepmemset_chainsum_submatricesnormalize__builtin_puts_vtable_offsetparseopthas_colorsexitrawfileaacountscolorcharstdoutindexfclosenvar_padded_next__off64_twrite_matrixevaluatememcpy_IO_save_enddestroyconjugrad_eps__pad1__pad2__pad3__pad4__pad5_IO_write_end_unused2argvepsilonCONJUGRADERR_MAXIMUMLINESEARCH_IO_backup_baseCONJUGRAD_ALREADY_MINIMIZEDargcwrite_rawextraCONJUGRAD_SUCCESSFILEnsingle_paddedinitfilename_IO_write_baselong_usageresultaanormoptListGCC: (GNU) 4.8.5 20150623 (Red Hat 4.8.5-28)zRx 8GpH4BHB B(A0A8G8A0A(B BBBND n F SxDv F s<lBEB D(A0G (A BBBD AP"BBB J(A0D8G 8A0A(B BBBD  8       % +2@<CH NV`krpxw|l`"+<IYblvccmpred.cprogress.LC1.LC27.LC28.LC29printfinit_biasmemsetlogfdetect_colorssetuptermhas_colorsisattylogoputsconcatstrlenmemcpydieusageexitputcharmainparseoptfopenread_msafcloseconjugrad_malloc__isnanfread_rawevaluate_cpudestroy_cpuconjugrad_initomp_set_num_threadsevaluate_cpu_ompinit_cpu_ompdestroy_cpu_ompinit_cpuconjugradwrite_rawsum_submatriceswrite_matrixfflushconjugrad_freestrtodstrtolnormalizeapc -6B ^!x (# @# h# # # P# #   % %&-'='Q V(i n|*  # # # # 8#+ # #+ # H# # # )#+ B###&" D0$;-C WH$S-a.l- -+ Z0(8-W k_/}01"  +2,:3e&24 5 67!8* 9/ :8 ;D <Z `_o t# =+   #  /+2F %MU Z/u>?@1A1BBB-- - ?R)CDDC,DWC m #  #  Z    (& 8+(; @#SEfFu |  #)`*** *(*0*8*@*H*P*X*`*h*p*x********************* *(*0*8*@*H*P*X*`*h*p*x****************H*8** *(*0*8*@*H*P*X*`*h*p*x******************** *(P0*8*@HH@P*X `h*px******  J ^ 0% , 01 > E L 8S Z a o t  E >  H      i     ' l4 A lN M[ h u  >   @  J       , 3 ? ?K %W A   7 B     $ 0 < 4I pT   6  K  a  # G/ ; 6G YS ;_ 0k w      + 4 &   + t e & `6 B Lc m z 9 r    1 !  \    1 j@> BL Q [ ` 6j o Yy 4~ M  3 R |         @ * e0M SCp v: zD [ i:Fb p  ( @ + h5 J T i s   P         0 1> L Z 8_ i n    1 A Z " !( `? .I N xX ) ] rr           + 85 L a k       H      2 )< S  d Bo Ry  ! _   `  , "        r     " 8' 1 6 @ TE O T X^ c em r |   [ 6   T \   O &   6  P Y ! ;, 1 M< JA 3L Q \ 9j y ~ _    y 1 \   ~ W   `- 2Jf k ? c    0=PY ^[r!4D?LWWe'p?W4lZv<ck1;P`w0>i"/%GN[cp`x)9NXmw/Q%^y;[s(@!U?gV~m4AZK`r/8DWj!6H]g"        4 : 'M c -y e   )    T < ;W Ov ,   z   V% &@ ` O F  89ALT8rz  888!)4<8\d o w8008008 00$8B@JU]hp@nnilli4q<}G}O\dxq}}RqZx}x}}-5|qC# @H em(y(C  p| |19DLLWL_MmMu\HHMM\    FM\8@KSJ^Mf\!##EEYY\`mmq q %) `1 h< hD %_ g r z | |     "      5 5 # + 9 A L T b j "      A 5       " * 7 ? AL 5T a i v ~       A 5     $ , A9 5A N V r z Y d h h # 5     % % * 2 L T a i "      A 5    8@LTAa5i4v9~A5ii nn,4Tk\ogooz  ((A5A5:'>2>:RERMVXV`ks)33???A5$,7?[pcowA5pA5%08Tp\hp{A5p A5 +3OpWgozA5i"-5PXck#x:#%-JRks:oo#%%9ALT#aiv~ #o%{0{8#CKV%^.i.q|#:LM1L9#DLW:_jrL4:I"*5=H:PI[c~..#I9LL#(I0=E`9hdtd|xx#Ioo{{#?Gck /PZ  C08%@H" 8@ p`.symtab.strtab.shstrtab.rela.text.data.bss.rodata.str1.8.rodata.str1.1.rela.text.startup.rela.rodata.rodata.cst16.rodata.cst4.rela.debug_info.debug_abbrev.rela.debug_loc.rela.debug_aranges.rela.debug_ranges.rela.debug_line.debug_str.comment.note.GNU-stack.rela.eh_frame @%@j`&e,e12h@2N _T "O@Pq gb@0|@  o} @p* 4%8@`P4S@@H4T`@T@00MY0`.aah@b (i$