/***************************************************************************** * gbfeatdfn.h: * -- GenBank Feature table define file * ******************************************************************************/ #ifndef _GBFEATDFN_ #define _GBFEATDFN_ #define GBQUAL_allele 0 #define GBQUAL_anticodon 1 #define GBQUAL_bound_moiety 2 #define GBQUAL_cell_line 3 #define GBQUAL_cell_type 4 #define GBQUAL_chromosome 5 #define GBQUAL_chloroplast 6 #define GBQUAL_chromoplast 7 #define GBQUAL_citation 8 #define GBQUAL_clone 9 #define GBQUAL_clone_lib 10 #define GBQUAL_codon 11 #define GBQUAL_codon_start 12 #define GBQUAL_cons_splice 13 #define GBQUAL_cultivar 14 #define GBQUAL_cyanelle 15 #define GBQUAL_db_xref 16 #define GBQUAL_dev_stage 17 #define GBQUAL_direction 18 #define GBQUAL_EC_number 19 #define GBQUAL_evidence 20 #define GBQUAL_exception 21 #define GBQUAL_frequency 22 #define GBQUAL_function 23 #define GBQUAL_gene 24 #define GBQUAL_gdb_xref 25 #define GBQUAL_germline 26 #define GBQUAL_haplotype 27 #define GBQUAL_insertion_seq 28 #define GBQUAL_isolate 29 #define GBQUAL_kinetoplast 30 #define GBQUAL_label 31 #define GBQUAL_lab_host 32 #define GBQUAL_map 33 #define GBQUAL_macronuclear 34 #define GBQUAL_mitochondrion 35 #define GBQUAL_mod_base 36 #define GBQUAL_note 37 #define GBQUAL_number 38 #define GBQUAL_organism 39 #define GBQUAL_partial 40 #define GBQUAL_PCR_conditions 41 #define GBQUAL_pop_variant 42 #define GBQUAL_phenotype 43 #define GBQUAL_plasmid 44 #define GBQUAL_product 45 #define GBQUAL_proviral 46 #define GBQUAL_pseudo 47 #define GBQUAL_rearranged 48 #define GBQUAL_replace 49 #define GBQUAL_rpt_family 50 #define GBQUAL_rpt_type 51 #define GBQUAL_rpt_unit 52 #define GBQUAL_sex 53 #define GBQUAL_sequenced_mol 54 #define GBQUAL_serotype 55 #define GBQUAL_specific_host 56 #define GBQUAL_standard_name 57 #define GBQUAL_strain 58 #define GBQUAL_sub_clone 59 #define GBQUAL_sub_species 60 #define GBQUAL_sub_strain 61 #define GBQUAL_tissue_lib 62 #define GBQUAL_tissue_type 63 #define GBQUAL_translation 64 #define GBQUAL_transl_except 65 #define GBQUAL_transl_table 66 #define GBQUAL_transposon 67 #define GBQUAL_usedin 68 #define GBQUAL_variety 69 #define GBQUAL_virion 70 #define GBQUAL_focus 71 #define GBQUAL_specimen_voucher 72 #define GBQUAL_protein_id 73 #define GBQUAL_country 74 #define GBQUAL_organelle 75 #define GBQUAL_transcript_id 76 #define GBQUAL_transgenic 77 #define GBQUAL_environmental_sample 78 #define GBQUAL_isolation_source 79 #define GBQUAL_serovar 80 #define GBQUAL_locus_tag 81 #define GBQUAL_mol_type 82 #define GBQUAL_segment 83 #define GBQUAL_ecotype 84 #define GBQUAL_estimated_length 85 #define GBQUAL_operon 86 #define GBQUAL_old_locus_tag 87 #define GBQUAL_compare 88 #define GBQUAL_experiment 89 #define GBQUAL_inference 90 #define GBQUAL_rpt_unit_seq 91 #define GBQUAL_rpt_unit_range 92 #define GBQUAL_ribosomal_slippage 93 #define GBQUAL_trans_splicing 94 #define GBQUAL_collected_by 95 #define GBQUAL_collection_date 96 #define GBQUAL_identified_by 97 #define GBQUAL_lat_lon 98 #define GBQUAL_PCR_primers 99 #define GBQUAL_mobile_element 100 #define GBQUAL_metagenomic 101 #define GBQUAL_culture_collection 102 #define GBQUAL_bio_material 103 #define GBQUAL_ncRNA_class 104 #define GBQUAL_tag_peptide 105 #define GBQUAL_mating_type 106 #define GBQUAL_satellite 107 #define GBQUAL_gene_synonym 108 #define GBQUAL_UniProtKB_evidence 109 #define GBQUAL_haplogroup 110 #define GBQUAL_artificial_location 111 #define GBQUAL_non_functional 112 #define GBQUAL_pseudogene 113 #define GBQUAL_mobile_element_type 114 #define GBQUAL_gap_type 115 #define GBQUAL_linkage_evidence 116 #define ParFlat_TOTAL_GBQUAL 117 #define ParFlat_TOTAL_IntOr 3 #define ParFlat_TOTAL_LRB 3 #define ParFlat_TOTAL_Exp 2 #define ParFlat_TOTAL_Rpt 7 #define ParFlat_TOTAL_GBFEAT 70 #define Class_pos_aa 1 #define Class_text 2 #define Class_bracket_int 3 #define Class_seq_aa 4 #define Class_int_or 5 #define Class_site 6 #define Class_L_R_B 7 #define Class_ecnum 8 #define Class_exper 9 #define Class_none 10 #define Class_token 11 #define Class_int 12 #define Class_rpt 13 #define Class_flabel_base 14 #define Class_flabel_dbname 15 #define Class_note 16 #define Class_number 17 #define ParFlat_Stoken_type 1 #define ParFlat_BracketInt_type 2 #define ParFlat_Integer_type 3 #define ParFlat_Number_type 4 /*********************************************************************/ typedef struct sematic_gbfeature { CharPtr key; Int2 mand_num; Int2 mand_qual[5]; Int2 opt_num; Int2 opt_qual[65]; } SematicFeat, PNTR SematicFeatPtr; typedef struct gbfeat_name { CharPtr name; Uint1 gbclass; } GbFeatName, PNTR GbFeatNamePtr; #undef NLM_EXTERN #ifdef NLM_IMPORT #define NLM_EXTERN NLM_IMPORT #else #define NLM_EXTERN extern #endif NLM_EXTERN GbFeatNamePtr x_ParFlat_GBQual_names PROTO((void)); #define ParFlat_GBQual_names x_ParFlat_GBQual_names() NLM_EXTERN SematicFeatPtr x_ParFlat_GBFeat PROTO((void)); #define ParFlat_GBFeat x_ParFlat_GBFeat() NLM_EXTERN ValNodePtr Validate_ParFlat_GBFeat (void); extern CharPtr ParFlat_IntOrString [ParFlat_TOTAL_IntOr]; extern CharPtr ParFlat_LRBString [ParFlat_TOTAL_LRB]; extern CharPtr ParFlat_ExpString [ParFlat_TOTAL_Exp]; extern CharPtr ParFlat_RptString [ParFlat_TOTAL_Rpt]; #undef NLM_EXTERN #ifdef NLM_EXPORT #define NLM_EXTERN NLM_EXPORT #else #define NLM_EXTERN #endif #endif