/*===========================================================================
*
*                            PUBLIC DOMAIN NOTICE
*               National Center for Biotechnology Information
*
*  This software/database is a "United States Government Work" under the
*  terms of the United States Copyright Act.  It was written as part of
*  the author's official duties as a United States Government employee and
*  thus cannot be copyrighted.  This software/database is freely available
*  to the public for use. The National Library of Medicine and the U.S.
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*  Although all reasonable efforts have been taken to ensure the accuracy
*  and reliability of the software and data, the NLM and the U.S.
*  Government do not and cannot warrant the performance or results that
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*  Government disclaim all warranties, express or implied, including
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*  Please cite the author in any work or product based on this material.
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* ===========================================================================
*
* File Name:  cblastutil.h
*
* Author:  Yanli Wang
*
* Initial Version Creation Date: 6/25/2002
*
* $Revision: 1.5 $
*
* Modifications:
* ==========================================================================
*/

extern SeqEntryPtr CreatSingleEntry(BioseqPtr bsp);
extern SeqEntryPtr GetSeqEntry(BioseqPtr bsp1, BioseqPtr bsp2);
extern SeqAnnotPtr ReplaceSeqIdForSeqAnnot(SeqAnnotPtr sap, SeqIdPtr sip);
extern SeqAnnotPtr GetAlgForSubjectPair(SeqAnnotPtr sap, Int4 gi);
extern BioseqPtr CblastGetBioseqWithGi(Int4 gi, ReadDBFILEPtr rdfp);
extern NeighborInfoPtr NeighborInfoNew();
extern NeighborInfoPtr  NeighborInfoFree(NeighborInfoPtr nip);
extern NeighborInfoPtr GetRedundantPDBNeighborList(Int4 gi, ReadDBFILEPtr rdfp);
extern NeighborInfoPtr GetRedundantPDBNeighborInfo(Int4 gi, ReadDBFILEPtr rdfp);