#ifndef _objgbseq_ #define _objgbseq_ #undef NLM_EXTERN #ifdef NLM_IMPORT #define NLM_EXTERN NLM_IMPORT #else #define NLM_EXTERN extern #endif #ifdef __cplusplus extern "C" { /* } */ #endif /************************************************** * * Generated objects for Module NCBI-GBSeq * Generated using ASNCODE Revision: 6.17 at May 26, 2010 12:37 PM * **************************************************/ NLM_EXTERN Boolean LIBCALL objgbseqAsnLoad PROTO((void)); /************************************************** * * GBSet * **************************************************/ typedef struct struct_GBSeq GBSet; typedef struct struct_GBSeq PNTR GBSetPtr; #define GBSetNew() GBSeqNew() #ifdef NLM_GENERATED_CODE_PROTO NLM_EXTERN GBSetPtr LIBCALL GBSetFree PROTO ((GBSetPtr )); NLM_EXTERN GBSetPtr LIBCALL GBSetNew PROTO (( void )); NLM_EXTERN GBSetPtr LIBCALL GBSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL GBSetAsnWrite PROTO (( GBSetPtr , AsnIoPtr, AsnTypePtr)); #endif /* NLM_GENERATED_CODE_PROTO */ /************************************************** * * GBSeq * **************************************************/ typedef struct struct_GBSeq { struct struct_GBSeq PNTR next; Uint4 OBbits__; CharPtr locus; Int4 length; CharPtr strandedness; CharPtr moltype; CharPtr topology; CharPtr division; CharPtr update_date; CharPtr create_date; CharPtr update_release; CharPtr create_release; CharPtr definition; CharPtr primary_accession; CharPtr entry_version; CharPtr accession_version; ValNodePtr other_seqids; ValNodePtr secondary_accessions; CharPtr project; ValNodePtr keywords; CharPtr segment; CharPtr source; CharPtr organism; CharPtr taxonomy; struct struct_GBReference PNTR references; CharPtr comment; struct struct_GBComment PNTR comment_set; struct struct_GBStrucComment PNTR struc_comments; CharPtr primary; CharPtr source_db; CharPtr database_reference; struct struct_GBFeature PNTR feature_table; struct struct_GBFeatureSet PNTR feature_set; CharPtr sequence; CharPtr contig; struct struct_GBAltSeqData PNTR alt_seq; } GBSeq, PNTR GBSeqPtr; NLM_EXTERN GBSeqPtr LIBCALL GBSeqFree PROTO ((GBSeqPtr )); NLM_EXTERN GBSeqPtr LIBCALL GBSeqNew PROTO (( void )); NLM_EXTERN GBSeqPtr LIBCALL GBSeqAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL GBSeqAsnWrite PROTO (( GBSeqPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * GBReference * **************************************************/ typedef struct struct_GBReference { struct struct_GBReference PNTR next; Uint4 OBbits__; CharPtr reference; CharPtr position; ValNodePtr authors; CharPtr consortium; CharPtr title; CharPtr journal; struct struct_GBXref PNTR xref; #define OB__GBReference_pubmed 0 Int4 pubmed; CharPtr remark; } GBReference, PNTR GBReferencePtr; NLM_EXTERN GBReferencePtr LIBCALL GBReferenceFree PROTO ((GBReferencePtr )); NLM_EXTERN GBReferencePtr LIBCALL GBReferenceNew PROTO (( void )); NLM_EXTERN GBReferencePtr LIBCALL GBReferenceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL GBReferenceAsnWrite PROTO (( GBReferencePtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * GBComment * **************************************************/ typedef struct struct_GBComment { struct struct_GBComment PNTR next; Uint4 OBbits__; CharPtr type; struct struct_GBCommentParagraph PNTR paragraphs; } GBComment, PNTR GBCommentPtr; NLM_EXTERN GBCommentPtr LIBCALL GBCommentFree PROTO ((GBCommentPtr )); NLM_EXTERN GBCommentPtr LIBCALL GBCommentNew PROTO (( void )); NLM_EXTERN GBCommentPtr LIBCALL GBCommentAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL GBCommentAsnWrite PROTO (( GBCommentPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * GBStrucComment * **************************************************/ typedef struct struct_GBStrucComment { struct struct_GBStrucComment PNTR next; Uint4 OBbits__; CharPtr name; struct struct_GBStrucCommentItem PNTR items; } GBStrucComment, PNTR GBStrucCommentPtr; NLM_EXTERN GBStrucCommentPtr LIBCALL GBStrucCommentFree PROTO ((GBStrucCommentPtr )); NLM_EXTERN GBStrucCommentPtr LIBCALL GBStrucCommentNew PROTO (( void )); NLM_EXTERN GBStrucCommentPtr LIBCALL GBStrucCommentAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL GBStrucCommentAsnWrite PROTO (( GBStrucCommentPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * GBFeature * **************************************************/ typedef struct struct_GBFeature { struct struct_GBFeature PNTR next; Uint4 OBbits__; CharPtr key; CharPtr location; struct struct_GBInterval PNTR intervals; CharPtr operator__; #define OB__GBFeature_partial5 0 Uint1 partial5; #define OB__GBFeature_partial3 1 Uint1 partial3; struct struct_GBQualifier PNTR quals; struct struct_GBXref PNTR xrefs; } GBFeature, PNTR GBFeaturePtr; NLM_EXTERN GBFeaturePtr LIBCALL GBFeatureFree PROTO ((GBFeaturePtr )); NLM_EXTERN GBFeaturePtr LIBCALL GBFeatureNew PROTO (( void )); NLM_EXTERN GBFeaturePtr LIBCALL GBFeatureAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL GBFeatureAsnWrite PROTO (( GBFeaturePtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * GBFeatureSet * **************************************************/ typedef struct struct_GBFeatureSet { struct struct_GBFeatureSet PNTR next; Uint4 OBbits__; CharPtr annot_source; struct struct_GBFeature PNTR features; } GBFeatureSet, PNTR GBFeatureSetPtr; NLM_EXTERN GBFeatureSetPtr LIBCALL GBFeatureSetFree PROTO ((GBFeatureSetPtr )); NLM_EXTERN GBFeatureSetPtr LIBCALL GBFeatureSetNew PROTO (( void )); NLM_EXTERN GBFeatureSetPtr LIBCALL GBFeatureSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL GBFeatureSetAsnWrite PROTO (( GBFeatureSetPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * GBAltSeqData * **************************************************/ typedef struct struct_GBAltSeqData { struct struct_GBAltSeqData PNTR next; Uint4 OBbits__; CharPtr name; struct struct_GBAltSeqItem PNTR items; } GBAltSeqData, PNTR GBAltSeqDataPtr; NLM_EXTERN GBAltSeqDataPtr LIBCALL GBAltSeqDataFree PROTO ((GBAltSeqDataPtr )); NLM_EXTERN GBAltSeqDataPtr LIBCALL GBAltSeqDataNew PROTO (( void )); NLM_EXTERN GBAltSeqDataPtr LIBCALL GBAltSeqDataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL GBAltSeqDataAsnWrite PROTO (( GBAltSeqDataPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * GBXref * **************************************************/ typedef struct struct_GBXref { struct struct_GBXref PNTR next; Uint4 OBbits__; CharPtr dbname; CharPtr id; } GBXref, PNTR GBXrefPtr; NLM_EXTERN GBXrefPtr LIBCALL GBXrefFree PROTO ((GBXrefPtr )); NLM_EXTERN GBXrefPtr LIBCALL GBXrefNew PROTO (( void )); NLM_EXTERN GBXrefPtr LIBCALL GBXrefAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL GBXrefAsnWrite PROTO (( GBXrefPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * GBCommentParagraph * **************************************************/ typedef struct struct_GBCommentParagraph { struct struct_GBCommentParagraph PNTR next; Uint4 OBbits__; struct struct_GBCommentItem PNTR items; } GBCommentParagraph, PNTR GBCommentParagraphPtr; NLM_EXTERN GBCommentParagraphPtr LIBCALL GBCommentParagraphFree PROTO ((GBCommentParagraphPtr )); NLM_EXTERN GBCommentParagraphPtr LIBCALL GBCommentParagraphNew PROTO (( void )); NLM_EXTERN GBCommentParagraphPtr LIBCALL GBCommentParagraphAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL GBCommentParagraphAsnWrite PROTO (( GBCommentParagraphPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * GBCommentItem * **************************************************/ typedef struct struct_GBCommentItem { struct struct_GBCommentItem PNTR next; Uint4 OBbits__; CharPtr value; CharPtr url; } GBCommentItem, PNTR GBCommentItemPtr; NLM_EXTERN GBCommentItemPtr LIBCALL GBCommentItemFree PROTO ((GBCommentItemPtr )); NLM_EXTERN GBCommentItemPtr LIBCALL GBCommentItemNew PROTO (( void )); NLM_EXTERN GBCommentItemPtr LIBCALL GBCommentItemAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL GBCommentItemAsnWrite PROTO (( GBCommentItemPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * GBStrucCommentItem * **************************************************/ typedef struct struct_GBStrucCommentItem { struct struct_GBStrucCommentItem PNTR next; Uint4 OBbits__; CharPtr tag; CharPtr value; CharPtr url; } GBStrucCommentItem, PNTR GBStrucCommentItemPtr; NLM_EXTERN GBStrucCommentItemPtr LIBCALL GBStrucCommentItemFree PROTO ((GBStrucCommentItemPtr )); NLM_EXTERN GBStrucCommentItemPtr LIBCALL GBStrucCommentItemNew PROTO (( void )); NLM_EXTERN GBStrucCommentItemPtr LIBCALL GBStrucCommentItemAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL GBStrucCommentItemAsnWrite PROTO (( GBStrucCommentItemPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * GBInterval * **************************************************/ typedef struct struct_GBInterval { struct struct_GBInterval PNTR next; Uint4 OBbits__; #define OB__GBInterval_from 0 Int4 from; #define OB__GBInterval_to 1 Int4 to; #define OB__GBInterval_point 2 Int4 point; #define OB__GBInterval_iscomp 3 Uint1 iscomp; #define OB__GBInterval_interbp 4 Uint1 interbp; CharPtr accession; } GBInterval, PNTR GBIntervalPtr; NLM_EXTERN GBIntervalPtr LIBCALL GBIntervalFree PROTO ((GBIntervalPtr )); NLM_EXTERN GBIntervalPtr LIBCALL GBIntervalNew PROTO (( void )); NLM_EXTERN GBIntervalPtr LIBCALL GBIntervalAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL GBIntervalAsnWrite PROTO (( GBIntervalPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * GBQualifier * **************************************************/ typedef struct struct_GBQualifier { struct struct_GBQualifier PNTR next; Uint4 OBbits__; CharPtr name; CharPtr value; } GBQualifier, PNTR GBQualifierPtr; NLM_EXTERN GBQualifierPtr LIBCALL GBQualifierFree PROTO ((GBQualifierPtr )); NLM_EXTERN GBQualifierPtr LIBCALL GBQualifierNew PROTO (( void )); NLM_EXTERN GBQualifierPtr LIBCALL GBQualifierAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL GBQualifierAsnWrite PROTO (( GBQualifierPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * GBAltSeqItem * **************************************************/ typedef struct struct_GBAltSeqItem { struct struct_GBAltSeqItem PNTR next; Uint4 OBbits__; struct struct_GBInterval PNTR interval; #define OB__GBAltSeqItem_isgap 0 Uint1 isgap; #define OB__GBAltSeqItem_gap_length 1 Int4 gap_length; CharPtr gap_type; CharPtr gap_linkage; CharPtr gap_comment; CharPtr first_accn; CharPtr last_accn; CharPtr value; } GBAltSeqItem, PNTR GBAltSeqItemPtr; NLM_EXTERN GBAltSeqItemPtr LIBCALL GBAltSeqItemFree PROTO ((GBAltSeqItemPtr )); NLM_EXTERN GBAltSeqItemPtr LIBCALL GBAltSeqItemNew PROTO (( void )); NLM_EXTERN GBAltSeqItemPtr LIBCALL GBAltSeqItemAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL GBAltSeqItemAsnWrite PROTO (( GBAltSeqItemPtr , AsnIoPtr, AsnTypePtr)); #ifdef __cplusplus /* { */ } #endif #endif /* _objgbseq_ */ #undef NLM_EXTERN #ifdef NLM_EXPORT #define NLM_EXTERN NLM_EXPORT #else #define NLM_EXTERN #endif