// Copyright 2009, Andreas Biegert #ifndef CS_AA_H_ #define CS_AA_H_ namespace cs { class AA { public: // Size of alphabet excluding wildcard character ANY static const size_t kSize; // Size of alphabet includding wildcard character ANY static const size_t kSizeAny; // Integer code of ANY character static const uint8_t kAny; // Integer code of GAP static const uint8_t kGap; // Integer code of ENDGAP static const uint8_t kEndGap; // For converting from ASCII to the amino acid code static const uint8_t kCharToInt[]; // For converting from integer code back to ASCII character static const char kIntToChar[]; // For testing if ASCII character is from amino acid code static const bool kValidChar[]; // Functional groups of amino acid alphabet needed for coloring of profile logos static const int kFuncGroup[]; // Name of this alphabet static const char kName[]; private: DISALLOW_COPY_AND_ASSIGN(AA); }; } // namespace cs #endif // CS_AA_H_