# hmmsearch :: search profile(s) against a sequence database # HMMER 3.0b3 (November 2009); http://hmmer.org/ # Copyright (C) 2009 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: domain0.hmmer # target sequence database: /home/chengji/software/prosys_database/fr_lib/sort90 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: domain0.fasta [M=91] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence (and alignments): [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (91 nodes) Target sequences: 52151 (12477216 residues) Passed MSV filter: 918 (0.0176027); expected 1043.0 (0.02) Passed bias filter: 726 (0.0139211); expected 1043.0 (0.02) Passed Vit filter: 40 (0.000767004); expected 52.2 (0.001) Passed Fwd filter: 0 (0); expected 0.5 (1e-05) Initial search space (Z): 52151 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.41u 3.20s 00:00:03.61 Elapsed: 00:00:04.61 # Mc/sec: 246.30 //