BLASTP 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= domain0 (91 letters) Database: nr 10,219,744 sequences; 3,539,507,111 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value gi|224013150 53 9e-06 gi|54296327 35 2.5 gi|258576973 33 6.6 gi|340778796 33 7.5 >gi|224013150 Length = 237 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 24/24 (100%), Positives = 24/24 (100%) Query: 68 MCMHVDLQVAMSSILSKLTGKDDT 91 MCMHVDLQVAMSSILSKLTGKDDT Sbjct: 1 MCMHVDLQVAMSSILSKLTGKDDT 24 >gi|54296327 Length = 639 Score = 35.0 bits (79), Expect = 2.5, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 7/69 (10%) Query: 29 INSTHALA--SSISIRAPSEDNANAGNTHAPS---DRAFTPESVMCMHVDLQVAMSSILS 83 I+STH L+ SS S P ++ PS +R FTPE +M + V +Q A+SS+ + Sbjct: 432 ISSTHVLSEISSESRIMPEATIQSSDEVIQPSSKDERGFTPEQIMVIKVAMQEALSSMGT 491 Query: 84 K--LTGKDD 90 ++G+DD Sbjct: 492 SHFVSGRDD 500 >gi|258576973 Length = 887 Score = 33.5 bits (75), Expect = 6.6, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 22 IEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPES 66 I +P T + S + LAS++S P++D+ A +T P F ES Sbjct: 765 IREPSTGVRSANPLASAVSTNTPAQDSTAAASTTRPGMNYFDFES 809 >gi|340778796 Length = 1133 Score = 33.5 bits (75), Expect = 7.5, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 22/46 (47%) Query: 29 INSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDL 74 + H L S+++ A SED H + A TPE +C H+ L Sbjct: 241 VKHRHGLVGSVTVGAASEDAGAPVTAHLVAQGAVTPEGTLCWHIAL 286 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: gi|224013150 54 3e-06 Sequences not found previously or not previously below threshold: gi|54296327 37 0.43 gi|340778796 36 1.4 gi|258576973 35 2.2 gi|242817774 33 9.8 CONVERGED! >gi|224013150 Length = 237 Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 24/24 (100%), Positives = 24/24 (100%) Query: 68 MCMHVDLQVAMSSILSKLTGKDDT 91 MCMHVDLQVAMSSILSKLTGKDDT Sbjct: 1 MCMHVDLQVAMSSILSKLTGKDDT 24 >gi|54296327 Length = 639 Score = 37.5 bits (85), Expect = 0.43, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 7/69 (10%) Query: 29 INSTHALA--SSISIRAPSEDNANAGNTHAPS---DRAFTPESVMCMHVDLQVAMSSILS 83 I+STH L+ SS S P ++ PS +R FTPE +M + V +Q A+SS+ + Sbjct: 432 ISSTHVLSEISSESRIMPEATIQSSDEVIQPSSKDERGFTPEQIMVIKVAMQEALSSMGT 491 Query: 84 K--LTGKDD 90 ++G+DD Sbjct: 492 SHFVSGRDD 500 >gi|340778796 Length = 1133 Score = 35.9 bits (81), Expect = 1.4, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 22/46 (47%) Query: 29 INSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDL 74 + H L S+++ A SED H + A TPE +C H+ L Sbjct: 241 VKHRHGLVGSVTVGAASEDAGAPVTAHLVAQGAVTPEGTLCWHIAL 286 >gi|258576973 Length = 887 Score = 35.2 bits (79), Expect = 2.2, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 6/51 (11%) Query: 22 IEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPS------DRAFTPES 66 I +P T + S + LAS++S P++D+ A +T P + A+ P+S Sbjct: 765 IREPSTGVRSANPLASAVSTNTPAQDSTAAASTTRPGMNYFDFESAYNPQS 815 >gi|242817774 Length = 419 Score = 33.2 bits (74), Expect = 9.8, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 25/46 (54%) Query: 21 RIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPES 66 R P T NS++ L ++++ P+ N++ G +PS R + +S Sbjct: 274 RTTSPNTGANSSYGLYENVNVEQPNTSNSSPGGADSPSSRQLSSKS 319 Database: nr Posted date: Feb 28, 2013 3:13 PM Number of letters in database: 999,999,802 Number of sequences in database: 2,918,502 Database: /home/casp13/tools/I-TASSER5.1/ITLIB/nr/nr.01 Posted date: Feb 28, 2013 3:15 PM Number of letters in database: 999,999,994 Number of sequences in database: 2,940,858 Database: /home/casp13/tools/I-TASSER5.1/ITLIB/nr/nr.02 Posted date: Feb 28, 2013 3:18 PM Number of letters in database: 999,999,812 Number of sequences in database: 2,796,349 Database: /home/casp13/tools/I-TASSER5.1/ITLIB/nr/nr.03 Posted date: Feb 28, 2013 3:19 PM Number of letters in database: 539,507,503 Number of sequences in database: 1,564,035 Lambda K H 0.314 0.124 0.371 Lambda K H 0.267 0.0381 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,192,701,298 Number of Sequences: 10219744 Number of extensions: 38669207 Number of successful extensions: 93158 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 93149 Number of HSP's gapped (non-prelim): 12 length of query: 91 length of database: 3,539,507,111 effective HSP length: 61 effective length of query: 30 effective length of database: 2,916,102,727 effective search space: 87483081810 effective search space used: 87483081810 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 74 (33.2 bits)