Name "main::aligntemp1" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/alignment_check_hard_V1.pl line 105. Name "main::alignment_file_tmp" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/alignment_check_hard_V1.pl line 1461. Name "main::clash_list" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/alignment_check_hard_V1.pl line 938. Name "main::template_struct_original_best" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/alignment_check_hard_V1.pl line 1134. Name "main::firstcov" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/alignment_check_hard_V1.pl line 107. Name "main::front_start" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/alignment_check_hard_V1.pl line 688. Name "main::wholecov" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/alignment_check_hard_V1.pl line 108. Name "main::firstcov_original" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/alignment_check_hard_V1.pl line 879. Name "main::targetlen" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/alignment_check_hard_V1.pl line 106. Name "main::combine" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/alignment_check_hard_V1.pl line 45. Name "main::end_end" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/alignment_check_hard_V1.pl line 716. Name "main::tem_align_original_best" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/alignment_check_hard_V1.pl line 1131. Name "main::foundfrontone_range" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/alignment_check_hard_V1.pl line 687. Name "main::Total_Top5_hard_region_id" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/alignment_check_hard_V1.pl line 348. Name "main::Total_Top5_hard_region" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/alignment_check_hard_V1.pl line 347. Name "main::foundendone_range" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/alignment_check_hard_V1.pl line 714. ************************************************** run alignment_check.pl check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//DeepSF1.pir Processing original info = e4po7A1 58 4.21 0.45 22 18 0.10 Warn: wrong format, should have 5 elemens Processing original info = e2rsmA1 115 10.33 0.34 66 12 0.18 Warn: wrong format, should have 5 elemens check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//hhsuite5.pir Processing original info = 5iwzA 372 24.51 0.88 4 Processing original info = 2gmhA 581 24.20 1.1 5 Processing original info = 2fzpA 134 21.26 11 39 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//DeepSF2.pir Processing original info = e2rsmA1 115 10.33 0.34 66 12 0.18 Warn: wrong format, should have 5 elemens check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//DeepSF3.pir Processing original info = e3wsyA2 54 5.49 12 1 Processing original info = e5a8kA1 267 4.84 16 3 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//HHsearch15_ss9.pir Processing original info = 5optQ 200 15.05 92 8 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//HHsearch12_hh4.pir Processing original info = 4r5rA 68 20.12 21 3 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//DeepSF4.pir Processing original info = e5a8kA1 267 4.84 16 3 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//HHsearch15_ss2.pir Processing original info = 1zh1A 163 16.44 47 1 Processing original info = 2yiaA 790 16.20 53 2 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//hhsuite2.pir Processing original info = 2yiaA 790 28.16 0.05 1 Processing original info = 2gmhA 581 24.20 1.1 5 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//hhsuite1.pir Processing original info = 3cmvG 1167 28.22 0.048 0 Processing original info = 2yiaA 790 28.16 0.05 1 Processing original info = 2gmhA 581 24.20 1.1 5 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//HHsearch15_ss3.pir Processing original info = 2yiaA 790 16.20 53 2 Processing original info = 4cl1D 160 15.59 71 3 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//DeepSF5.pir Processing original info = d2c7na1 55 5.49 0.3 25 24 0.13 Warn: wrong format, should have 5 elemens check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//HHsearch12_hh9.pir Processing original info = 3uciA 72 19.20 32 8 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//hhsuite4.pir Processing original info = 3cmtD 1609 26.00 0.27 3 Processing original info = 5iwzA 372 24.51 0.88 4 Processing original info = 2gmhA 581 24.20 1.1 5 Processing original info = 2fzpA 134 21.26 11 39 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//HHsearch12_hh6.pir Processing original info = 2m7fA 71 19.75 25 5 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//HHsearch15_ss7.pir Processing original info = 5xxuH 177 15.13 89 6 Processing original info = 3citA 153 15.08 91 7 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//HHsearch15_ss4.pir Processing original info = 4cl1D 160 15.59 71 3 Processing original info = 5iwzA 372 15.33 81 4 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//HHsearch12_hh2.pir Processing original info = 1l3xA 73 20.71 16 1 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//HHsearch15_ss1.pir Processing original info = 2y0nE 39 17.43 29 0 Processing original info = 1zh1A 163 16.44 47 1 Processing original info = 2yiaA 790 16.20 53 2 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//HHsearch12_hh8.pir Processing original info = 4cl1D 160 19.53 27 7 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//hhsuite6.pir Processing original info = 2gmhA 581 24.20 1.1 5 Processing original info = 2gakA 374 23.74 1.6 6 Processing original info = 3citA 153 22.70 3.7 9 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//HHsearch15_ss5.pir Processing original info = 5iwzA 372 15.33 81 4 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//HHsearch15_ss6.pir Processing original info = 1t82B 142 15.19 86 5 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//HHsearch12_hh5.pir Processing original info = 1zh1A 163 20.10 21 4 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//hhsuite8.pir Processing original info = 6ej7A 706 22.99 2.9 7 Processing original info = 3citA 153 22.70 3.7 9 Processing original info = 5tcxA 206 21.65 8.4 27 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//HHsearch15_ss8.pir Processing original info = 3citA 153 15.08 91 7 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//hhsuite3.pir Processing original info = 3cmvA 1190 27.19 0.11 2 Processing original info = 5iwzA 372 24.51 0.88 4 Processing original info = 2gmhA 581 24.20 1.1 5 Processing original info = 2fzpA 134 21.26 11 39 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//hhsuite9.pir Processing original info = 1mo4A 324 22.73 3.6 8 Processing original info = 3citA 153 22.70 3.7 9 Processing original info = 5tcxA 206 21.65 8.4 27 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//HHsearch12_hh1.pir Processing original info = 2kakA 53 22.60 6.5 0 Processing original info = 1zh1A 163 20.10 21 4 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//HHsearch12_hh7.pir Processing original info = 2gmgA 105 19.74 25 6 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//hhsuite7.pir Processing original info = 2gakA 374 23.74 1.6 6 Processing original info = 3citA 153 22.70 3.7 9 Processing original info = 5tcxA 206 21.65 8.4 27 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//hhsuite10.pir Processing original info = 3citA 153 22.70 3.7 9 Processing original info = 3hr8A 342 22.65 3.8 10 Processing original info = 2qj1A 767 21.73 7.9 24 Processing original info = 5tcxA 206 21.65 8.4 27 check /home/casp11/multicom/ZCA_155705426023607/domain0/novel/MODELS//HHsearch12_hh3.pir Processing original info = 1fvlA 70 20.44 18 2 33 0: ----------------------------------------------------------------------QWVSYTIDFK----DILERNCEEKDY* DeepSF1 single e4po7A1 0.45 structureX:e4po7A1: 1: : 22: : : : : 1: -------------------RKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQEKV------* DeepSF1 single e2rsmA1 0.34 structureX:e2rsmA1: 34: : 104: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGN-----THAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: -----------------------------------------NFCIQQEALKKMNLMLDRINQEMLTLMSNMGERILDVGDYELQVGIVEALCRMTTEKRR* hhsuite5 single 5iwzA 0.88 structureX:5iwzA: 161: : 219: : : : : 1: ---GDGFRLQINAQNCVHCKTCD-----------------------------------------------------------------------------* hhsuite5 single 2gmhA 1.1 structureX:2gmhA:538: :557: : : : : 2: -------------ENA-HERSWPQGLATLETRQMNRRYYENYVAKRIPGKQ-------------------------------------------------* hhsuite5 single 2fzpA 11 structureX:2fzpA:65: :101: : : : : Q: TRCGCGTHAP---SNC-HARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESV-----MCMHVDLQVAMSSILSKLTGKDDT* Target 0: -------------------RKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQEKV------* DeepSF2 single e2rsmA1 0.34 structureX:e2rsmA1: 34: : 104: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGN-----THAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: ----------TDALGVPCTENDYKLWSPSDERGNECLLGHKTVFKRRTPHATCFNGEDFDRPV--------V--------------------------* DeepSF3 single e3wsyA2 12 structureX:e3wsyA2: 1: : 54: : : : : 1: --------------------------------------------------------------------------RWSAMQIGMSMISAYKQAAGEAAT* DeepSF3 single e5a8kA12 16 structureX:e5a8kA1:224: :247: : : : : Q: TRCGCGTHAPSNCHARACTERIE---DPRTEINSTHALAS--SISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSK-LT-GKDDT* Target 0: ----------------------------------------------------------------------------IIAHVYKQLTHRTVS* HHsearch15_ss9 single 5optQ 92 structureX:5optQ: 171: : 185: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: KECDCSSPENPCCDAATCK------------------------------------------------------------------------* HHsearch12_hh4 single 4r5rA 21 structureX:4r5rA: 2: : 20: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: KRLGKEVTPETITHYLETVNHAMPGAAVVQEHMVETHPALVADSYVKVFTGNDEIADEIDPAFVIDIN--------KQFPEDQAETLKAEVGDGIWQVVRIPTIVSRTCDGATTSRWSAMQIGMSMISAYKQAAGEAAT* DeepSF4 single e5a8kA1 16 structureX:e5a8kA1: 117: : 247: : : : : Q: TRC-----------------------------GCGTHA--PSNCHARACTERIE-----DPRTEINSTHALASSISIRAPSEDN----ANAGNTHAPSDRAFTPESVMC------MHVDLQVAMSSILSK-LT-GKDDT* Target 0: TTCPCGAQI--TGHVKNGSMRIVGPRTCSNTWH----------------------------------------------------------* HHsearch15_ss2 single 1zh1A 47 structureX:1zh1A: 20: : 50: : : : : 1: ------------------------------PTHLLLSMVSTPVMNESKLNITNTQTPSLYGFSPF-----HGGMDRIMTIIRDSLDNDEDL* HHsearch15_ss2 single 2yiaA 53 structureX:2yiaA: 325: : 380: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: ----------------------------------PTHLLLSMVSTPVMNESKLNITNTQTPSLYGFSP-----FHGGMDRIMTIIRDSLDNDEDL* hhsuite2 multiple 2yiaA 0.05 structureX:2yiaA: 325: : 380: : : : : 1: ---GDGFRLQINAQNCVHCKTCD------------------------------------------------------------------------* hhsuite2 multiple 2gmhA 1.1 structureX:2gmhA:538: :557: : : : : Q: TRCGCGTHAP---SNC-HARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: -------------------------------------------------------------------------SHMGLAARMMSQAMRKLAGNLKQ* hhsuite1 multiple 3cmvG 0.048 structureX:3cmvG: 126: : 148: : : : : 1: ----------------------------------PTHLLLSMVSTPVMNESKLNITNTQTPSLYGFSP-----FHGGMDR-IMTIIRDSLDNDEDL* hhsuite1 multiple 2yiaA 0.05 structureX:2yiaA: 325: : 380: : : : : 2: ---GDGFRLQINAQNCVHCKTCD-------------------------------------------------------------------------* hhsuite1 multiple 2gmhA 1.1 structureX:2gmhA:538: :557: : : : : Q: TRCGCGTHAP---SNC-HARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQV-AMSSILSKLTGKDDT* Target 0: ------------------------------PTHLLLSMVSTPVMNESKLNITNTQTPSLYGFSPF-----HGGMDRIMTIIRDSLDNDEDL* HHsearch15_ss3 single 2yiaA 53 structureX:2yiaA: 325: : 380: : : : : 1: -----------TGHVKNGTMRIVGPRTCRNMWS----------------------------------------------------------* HHsearch15_ss3 single 4cl1D 71 structureX:4cl1D:30: :51: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: -------------------------QKQIQEDWELAERLQ---REEEEAFASS--------------------------------------* DeepSF5 single d2c7na1 0.3 structureX:d2c7na1: 31: : 55: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: KECDCSSPENPCCDAATCK------------------------------------------------------------------------* HHsearch12_hh9 single 3uciA 32 structureX:3uciA: 6: : 24: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: ---------------------------------------------------------------AALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ* hhsuite4 single 3cmtD 0.27 structureX:3cmtD: 444: : 481: : : : : 1: -----------------------------------------NFCIQQEALKKMNLMLDRINQEMLTLMSN----M--------------------------* hhsuite4 single 5iwzA 0.88 structureX:5iwzA:161: :190: : : : : 2: ---GDGFRLQINAQNCVHCKTCD------------------------------------------------------------------------------* hhsuite4 single 2gmhA 1.1 structureX:2gmhA:538: :557: : : : : 3: -------------ENA-HERSWPQGLATLETRQMNRRYYENYVAKRIPGKQ--------------------------------------------------* hhsuite4 single 2fzpA 11 structureX:2fzpA:65: :101: : : : : Q: TRCGCGTHAP---SNC-HARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPES----VM-CMHVDLQV-AMSSILSKLTGKDDT* Target 0: KECDCSSPENPCCDAATCK------------------------------------------------------------------------* HHsearch12_hh6 single 2m7fA 25 structureX:2m7fA: 2: : 20: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: ----------------------------------------------------------------------------TFAAVYKKLTNKDAV* HHsearch15_ss7 single 5xxuH 89 structureX:5xxuH: 158: : 172: : : : : 1: ------------------------------GTLVLANSVAISAPDGEDI------------------------------------------* HHsearch15_ss7 single 3citA 91 structureX:3citA:108: :126: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: TRCHCGAEI--TGHVKNGTMRIVGPRTCRNMWS---------------------------------------------------------------* HHsearch15_ss4 single 4cl1D 71 structureX:4cl1D: 21: : 51: : : : : 1: -------------------------------------NFCIQQEALKKMNLMLDRINQEMLTLMSNMGERILDVGDYELQVGIVEALCRMTTEKRR* HHsearch15_ss4 single 5iwzA 81 structureX:5iwzA: 161: : 219: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPES-----VMCMHVDLQVAMSSILSKLTGKDDT* Target 0: EECDCGSPGNPCCDAATCK------------------------------------------------------------------------* HHsearch12_hh2 single 1l3xA 16 structureX:1l3xA: 4: : 22: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: -----------------------------------------------------------TSFFPESLLITPFLPVVAFGRPLPKLAPQNFE* HHsearch15_ss1 single 2y0nE 29 structureX:2y0nE: 4: : 35: : : : : 1: TTCPCGAQI--TGHVKNGSMRIVGPRTCSNTWH----------------------------------------------------------* HHsearch15_ss1 single 1zh1A 47 structureX:1zh1A: 20: : 50: : : : : 2: ------------------------------PTHLLLSMVSTPVMNESKLNITNTQTPSLYGFSPF--------------------------* HHsearch15_ss1 single 2yiaA 53 structureX:2yiaA:325: :359: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: TRCHCG--AEITGHVKNGTMRIVGPRTCRNMWS----------------------------------------------------------* HHsearch12_hh8 single 4cl1D 27 structureX:4cl1D: 21: : 51: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: ---GDGFRLQINAQNCVHCKTCD--IKDPSQNINWVV----------------------------------------------------------* hhsuite6 single 2gmhA 1.1 structureX:2gmhA: 538: : 569: : : : : 1: ----------------------------------------------------------------IYMPQNFYCIHVDRKA-EESFLAAVQGIASC* hhsuite6 single 2gakA 1.6 structureX:2gakA: 93: : 122: : : : : 2: ----------------------------------GTLVLANSVAISAPDGED-------------------------------------------* hhsuite6 single 3citA 3.7 structureX:3citA:108: :125: : : : : Q: TRCGCGTHAP---SNC-HARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: -------------------------------------NFCIQQEALKKMNLMLDRINQEMLTLMSNMGERILDVGDYELQVGIVEALCRMTTEKRR* HHsearch15_ss5 single 5iwzA 81 structureX:5iwzA: 161: : 219: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPES-----VMCMHVDLQVAMSSILSKLTGKDDT* Target 0: ----------------------------IAPLSFTDGELSVSAPLAPNINLHHTFAGSIYTITLT--------------------------* HHsearch15_ss6 single 1t82B 86 structureX:1t82B: 26: : 62: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: TTCPCG--AQITGHVKNGSMRIVGPRTCSNTWH----------------------------------------------------------* HHsearch12_hh5 single 1zh1A 21 structureX:1zh1A: 20: : 50: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: -------------------------------------------------------------YHKDHFYYIHVDKRS-NYLHRQVLQVSRQY* hhsuite8 single 6ej7A 2.9 structureX:6ej7A: 99: : 127: : : : : 1: ------------------------------GTLVLANSVAISAPDGED-------------------------------------------* hhsuite8 single 3citA 3.7 structureX:3citA:108: :125: : : : : 2: NLCPSGSNIISNLFKEDCHQKIDDL------------------------------------------------------------------* hhsuite8 single 5tcxA 8.4 structureX:5tcxA:147: :171: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: ------------------------------GTLVLANSVAISAPDGEDI------------------------------------------* HHsearch15_ss8 single 3citA 91 structureX:3citA: 108: : 126: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: ------------------------------------------------------------------------------SHMGLAARMMSQAMRKLAGNLKQ* hhsuite3 single 3cmvA 0.11 structureX:3cmvA: 433: : 455: : : : : 1: -----------------------------------------NFCIQQEALKKMNLMLDRINQEMLTLMSNMGERILDVGDYELQV-GIV------------* hhsuite3 single 5iwzA 0.88 structureX:5iwzA:161: :207: : : : : 2: ---GDGFRLQINAQNCVHCKTCD------------------------------------------------------------------------------* hhsuite3 single 2gmhA 1.1 structureX:2gmhA:538: :557: : : : : 3: -------------ENA-HERSWPQGLATLETRQMNRRYYENYVAKRIPGKQ--------------------------------------------------* hhsuite3 single 2fzpA 11 structureX:2fzpA:65: :101: : : : : Q: TRCGCGTHAP---SNC-HARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESV-----MCMHVDLQV-AMSSILSKLTGKDDT* Target 0: ---------------------------------------------------------SVAALVPRAELEGHVGLQARLMSQALRKMTGALNN* hhsuite9 single 1mo4A 3.6 structureX:1mo4A: 146: : 180: : : : : 1: ------------------------------GTLVLANSVAISAPDGED--------------------------------------------* hhsuite9 single 3citA 3.7 structureX:3citA:108: :125: : : : : 2: NLCPSGSNIISNLFKEDCHQKIDDL-------------------------------------------------------------------* hhsuite9 single 5tcxA 8.4 structureX:5tcxA:147: :171: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQV-AMSSILSKLTGKDDT* Target 0: TTCGCGEHCGCN-------------------------------------------------------------------------------* HHsearch12_hh1 single 2kakA 6.5 structureX:2kakA: 4: : 15: : : : : 1: --------AQITGHVKNGSMRIVGPRTCSNTWH----------------------------------------------------------* HHsearch12_hh1 single 1zh1A 21 structureX:1zh1A:26: :50: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: FVFKAEINIPSRC-PKCKSEWIEEPRFKLER------------------------------------------------------------* HHsearch12_hh7 single 2gmgA 25 structureX:2gmgA: 75: : 104: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: ------------------------------------------------------------IYMPQNFYCIHVDRKA-EESFLAAVQGIASC* hhsuite7 single 2gakA 1.6 structureX:2gakA: 93: : 122: : : : : 1: ------------------------------GTLVLANSVAISAPDGED-------------------------------------------* hhsuite7 single 3citA 3.7 structureX:3citA:108: :125: : : : : 2: NLCPSGSNIISNLFKEDCHQKIDDL------------------------------------------------------------------* hhsuite7 single 5tcxA 8.4 structureX:5tcxA:147: :171: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target 0: ------------------------------GTLVLANSVAISAPDGED---------------------------------------------* hhsuite10 single 3citA 3.7 structureX:3citA: 108: : 125: : : : : 1: ----------------------------------------------------------------------MQVGLQARLMSQALRKIAGSVNK* hhsuite10 single 3hr8A 3.8 structureX:3hr8A:161: :183: : : : : 2: --------------------------------------ITWPVMSNSPNNVLNIEGCPSLYKFNP----------------------------* hhsuite10 single 2qj1A 7.9 structureX:2qj1A:317: :343: : : : : 3: NLCPSGSNIISNLFKEDCHQKIDDL--------------------------------------------------------------------* hhsuite10 single 5tcxA 8.4 structureX:5tcxA:147: :171: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAG-NTHAPSDRAFTPESVMCMHVDLQV-AMSSILSKLTGKDDT* Target 0: EECDCGSPSNPCCDAATCK------------------------------------------------------------------------* HHsearch12_hh3 single 1fvlA 18 structureX:1fvlA: 2: : 20: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target Top 5 models: 5 are valid ####### Start checking hard region in model DeepSF1 ### Found available templates 0: ----------------------------------------------------------------------QWVSYTIDFK----DILERNCEEKDY* DeepSF1 single e4po7A1 0.45 structureX:e4po7A1: 1: : 22: : : : : 1: -------------------RKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQEKV------* DeepSF1 single e2rsmA1 0.34 structureX:e2rsmA1: 34: : 104: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGN-----THAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target The alignment coverage is: 0000000000000000000000000000000000000000000000000000000000000000011111111110000111111111111 ##### Search hard region among alignment coverage using neighborhood pairwise examination ##### Processing 0000000000000000000000000000000000000000000000000000000000000000011111111110000111111111111 @$region_record_tmp: 4 0: 0 64: Uncover: hard 1: 65 74: Cover: easy 2: 75 78: Uncover: medium 3: 79 90: Cover: medium Found the hard region: 1 0 : 64 : 00000000000000000000000000000000000000000000000000000000000000000 ### Final hard regions ### Start searching hard region # 0 0 : 69 : 0000000000000000000000000000000000000000000000000000000000000000011111 : TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCM region_start1,region_end1: 0,74 The initial coverage for hard region is 0.0714285714285714 The initial coverage alignment for hard region is 0000000000000000000000000000000000000000000000000000000000000000011111 #### start checking all the templates ### Round 1 ### checking hhsuite1:3cmvG:0.048 ### checking hhsuite2:2yiaA:0.05 ### checking hhsuite1:2yiaA:0.05 Round 1 finished. check target_aln_best: TRCGCGTHAP---SNC-HARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT perl /home/casp13/MULTICOM_NOVEL/scripts//pair2msa.pl /home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF1_rank0/Top5_alingment_augment/DomainCombine1/templates_list_tmp.txt /home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF1_rank0/Top5_alingment_augment/DomainCombine1/ /home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF1_rank0/Top5_alingment_augment/DomainCombine1/DeepSF11.pir domain0 perl /home/casp13/MULTICOM_NOVEL/scripts//pir2ts_energy.pl /home/casp13/deepsf_3d/deepsf3d_tools/modeller-9.16/ /home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF1_rank0/Top5_alingment_augment/DomainCombine1/ATOMS/ /home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF1_rank0/Top5_alingment_augment/DomainCombine1/ /home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF1_rank0/Top5_alingment_augment/DomainCombine1/DeepSF11.pir 5 Run Modeller 9v16... Total number of templates used for initial model generation is 2. Structures are generated in iteration:1 model 1 is created:domain0.1.pdb model 2 is created:domain0.2.pdb model 3 is created:domain0.3.pdb model 4 is created:domain0.4.pdb model 5 is created:domain0.5.pdb Current Energy of Model 1: 430.2837 Current Energy of Model 2: 535.5150 Current Energy of Model 3: 438.2014 Current Energy of Model 4: 452.8719 Current Energy of Model 5: 431.7183 the energy of the selected model 1 = 430.2837 Using parameters from /home/casp13/MULTICOM_NOVEL/tools/scwrl4//Scwrl4.ini Using rotamer library: /home/casp11/casp12/tools/scwrl4/bbDepRotLib.bin  Err can't read pdb file. pdb file doesn't exist. cp: cannot stat `/home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF1_rank0/Top5_alingment_augment/DomainCombine1/domain0.casp.pdb': No such file or directory cp: cannot stat `/home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF1_rank0/Top5_alingment_augment/DomainCombine1/domain0.casp.pdb': No such file or directory gzip: /home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF1_rank0/Top5_alingment_augment/DomainCombine1/ATOMS/DeepSF11.atom: No such file or directory hhsuite2-2yiaA-2: left_accept The improved coverage is 0.557142857142857 from model hhsuite2-2yiaA-2 cp: cannot stat `/home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF1_rank0/Top5_alingment_augment/DomainCombine1/domain0.casp.pdb': No such file or directory The improved coverage for hard region is 0.0714285714285714 The improved coverage alignment for hard region is 0000000000000000000000000000000000000000000000000000000000000000011111 ####### Finish checking hard region in model DeepSF1 ### ####### Start checking hard region in model hhsuite5 ### Found available templates 0: -----------------------------------------NFCIQQEALKKMNLMLDRINQEMLTLMSNMGERILDVGDYELQVGIVEALCRMTTEKRR* hhsuite5 single 5iwzA 0.88 structureX:5iwzA: 161: : 219: : : : : 1: ---GDGFRLQINAQNCVHCKTCD-----------------------------------------------------------------------------* hhsuite5 single 2gmhA 1.1 structureX:2gmhA:538: :557: : : : : 2: -------------ENA-HERSWPQGLATLETRQMNRRYYENYVAKRIPGKQ-------------------------------------------------* hhsuite5 single 2fzpA 11 structureX:2fzpA:65: :101: : : : : Q: TRCGCGTHAP---SNC-HARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESV-----MCMHVDLQVAMSSILSKLTGKDDT* Target The alignment coverage is: 0000000000000000000000000000000000000111111111111111111111111111111111111111111111111111111 ##### Search hard region among alignment coverage using neighborhood pairwise examination ##### Processing 0000000000000000000000000000000000000111111111111111111111111111111111111111111111111111111 0: 0 36: Uncover: hard 1: 37 90: Cover: easy Found the hard region: 1 0 : 36 : 0000000000000000000000000000000000000 ### Final hard regions ### Start searching hard region # 0 0 : 41 : 000000000000000000000000000000000000011111 : TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIR region_start1,region_end1: 0,45 The initial coverage for hard region is 0.119047619047619 The initial coverage alignment for hard region is 000000000000000000000000000000000000011111 #### start checking all the templates ### Round 1 ### checking hhsuite1:3cmvG:0.048 ### checking hhsuite2:2yiaA:0.05 ### checking hhsuite1:2yiaA:0.05 Round 1 finished. No alignment improvement The improved coverage for hard region is 0.119047619047619 The improved coverage alignment for hard region is 000000000000000000000000000000000000011111 ####### Finish checking hard region in model hhsuite5 ### ####### Start checking hard region in model DeepSF2 ### Found available templates 0: -------------------RKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQEKV------* DeepSF2 single e2rsmA1 0.34 structureX:e2rsmA1: 34: : 104: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGN-----THAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target The alignment coverage is: 0000000000000000000111111111111111111111111111111111111111111111111111111111111111111000000 ##### Search hard region among alignment coverage using neighborhood pairwise examination ##### Processing 0000000000000000000111111111111111111111111111111111111111111111111111111111111111111000000 0: 0 18: Uncover: medium 1: 19 84: Cover: easy 2: 85 90: Uncover: medium No hard regions are detected! Model is fine! ####### Finish checking hard region in model DeepSF2 ### ####### Start checking hard region in model DeepSF3 ### Found available templates 0: ----------TDALGVPCTENDYKLWSPSDERGNECLLGHKTVFKRRTPHATCFNGEDFDRPV--------V--------------------------* DeepSF3 single e3wsyA2 12 structureX:e3wsyA2: 1: : 54: : : : : 1: --------------------------------------------------------------------------RWSAMQIGMSMISAYKQAAGEAAT* DeepSF3 single e5a8kA12 16 structureX:e5a8kA1:224: :247: : : : : Q: TRCGCGTHAPSNCHARACTERIE---DPRTEINSTHALAS--SISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSK-LT-GKDDT* Target The alignment coverage is: 0000000000111111111111111111111111111111111111111111111111000000001000000000000000000000000 ##### Search hard region among alignment coverage using neighborhood pairwise examination ##### Processing 0000000000111111111111111111111111111111111111111111111111000000001000000000000000000000000 @$region_record_tmp: 5 Checking final region Checking 1: 24:8:5 0: 0 9: Uncover: medium 1: 10 57: Cover: easy 2: 58 65: Uncover: medium 3: 66 66: Cover: medium 4: 67 90: Uncover: hard Found the hard region: 1 67 : 90 : 000000000000000000000000 ### Final hard regions ### Start searching hard region # 0 62 : 90 : 00001000000000000000000000000 : TPESVMCMHVDLQVAMSSILSKLTGKDDT region_start1,region_end1: 67,97 The initial coverage for hard region is 0.0344827586206897 The initial coverage alignment for hard region is 00001000000000000000000000000 #### start checking all the templates ### Round 1 ### checking hhsuite1:3cmvG:0.048 ### checking hhsuite2:2yiaA:0.05 ### checking hhsuite1:2yiaA:0.05 Round 1 finished. check target_aln_best: TRCGCGTHAP---SNC-HARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT perl /home/casp13/MULTICOM_NOVEL/scripts//pair2msa.pl /home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF3_rank3/Top5_alingment_augment/DomainCombine1/templates_list_tmp.txt /home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF3_rank3/Top5_alingment_augment/DomainCombine1/ /home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF3_rank3/Top5_alingment_augment/DomainCombine1/DeepSF31.pir domain0 perl /home/casp13/MULTICOM_NOVEL/scripts//pir2ts_energy.pl /home/casp13/deepsf_3d/deepsf3d_tools/modeller-9.16/ /home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF3_rank3/Top5_alingment_augment/DomainCombine1/ATOMS/ /home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF3_rank3/Top5_alingment_augment/DomainCombine1/ /home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF3_rank3/Top5_alingment_augment/DomainCombine1/DeepSF31.pir 5 Run Modeller 9v16... Total number of templates used for initial model generation is 2. Structures are generated in iteration:1 model 1 is created:domain0.1.pdb model 2 is created:domain0.2.pdb model 3 is created:domain0.3.pdb model 4 is created:domain0.4.pdb model 5 is created:domain0.5.pdb Current Energy of Model 1: 482.8416 Current Energy of Model 2: 354.7931 Current Energy of Model 3: 518.9041 Current Energy of Model 4: 513.4501 Current Energy of Model 5: 448.1673 the energy of the selected model 2 = 354.7931 Using parameters from /home/casp13/MULTICOM_NOVEL/tools/scwrl4//Scwrl4.ini Using rotamer library: /home/casp11/casp12/tools/scwrl4/bbDepRotLib.bin  Err can't read pdb file. pdb file doesn't exist. cp: cannot stat `/home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF3_rank3/Top5_alingment_augment/DomainCombine1/domain0.casp.pdb': No such file or directory cp: cannot stat `/home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF3_rank3/Top5_alingment_augment/DomainCombine1/domain0.casp.pdb': No such file or directory gzip: /home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF3_rank3/Top5_alingment_augment/DomainCombine1/ATOMS/DeepSF31.atom: No such file or directory hhsuite2-2yiaA-2: left_accept The improved coverage is 0.862068965517241 from model hhsuite2-2yiaA-2 cp: cannot stat `/home/casp11/multicom/ZCA_155705426023607/domain0/novel/CHECK/DeepSF3_rank3/Top5_alingment_augment/DomainCombine1/domain0.casp.pdb': No such file or directory The improved coverage for hard region is 0.0344827586206897 The improved coverage alignment for hard region is 00001000000000000000000000000 ####### Finish checking hard region in model DeepSF3 ### ####### Start checking hard region in model HHsearch15_ss9 ### Found available templates 0: ----------------------------------------------------------------------------IIAHVYKQLTHRTVS* HHsearch15_ss9 single 5optQ 92 structureX:5optQ: 171: : 185: : : : : Q: TRCGCGTHAPSNCHARACTERIEDPRTEINSTHALASSISIRAPSEDNANAGNTHAPSDRAFTPESVMCMHVDLQVAMSSILSKLTGKDDT* Target The alignment coverage is: 0000000000000000000000000000000000000000000000000000000000000000000000000000111111111111111 ##### Search hard region among alignment coverage using neighborhood pairwise examination ##### Processing 0000000000000000000000000000000000000000000000000000000000000000000000000000111111111111111 0: 0 75: Uncover: hard 1: 76 90: Cover: hard Found the hard region: 2 0 : 75 : 0000000000000000000000000000000000000000000000000000000000000000000000000000 76 : 90 : 111111111111111 ### Final hard regions ### The target should be medium, but the range now is 0 90 ####### Finish checking hard region in model HHsearch15_ss9 ###