BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= domain1 (218 letters) Database: nr90 38,209,907 sequences; 13,267,535,841 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value ref|XP_002295227.1| predicted protein [Thalassiosira pseudonana ... 432 e-119 gb|AAX08632.1| cadmium-specific carbonic anhydrase [Thalassiosir... 347 3e-93 gb|EJK51395.1| carbonic anhydrase [Thalassiosira oceanica] 244 2e-62 ref|XP_003063214.1| predicted protein [Micromonas pusilla CCMP15... 242 8e-62 ref|XP_002504722.1| predicted protein [Micromonas commoda] >gi|2... 211 3e-52 ref|WP_006969407.1| hypothetical protein [Plesiocystis pacifica]... 183 7e-44 gb|KKU21508.1| hypothetical protein UX32_C0002G0050 [Microgenoma... 71 5e-10 gb|KKS54235.1| hypothetical protein UV17_C0023G0005 [Candidatus ... 69 2e-09 ref|WP_061961909.1| hypothetical protein [Demequina flava] 39 2.7 emb|CEF64008.1| C901 [Strongyloides ratti] 38 3.8 ref|WP_007424756.1| poly-beta-hydroxybutyrate polymerase [Acidip... 38 3.9 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|XP_002295227.1| predicted protein [Thalassiosira pseudonana ... 381 e-103 gb|AAX08632.1| cadmium-specific carbonic anhydrase [Thalassiosir... 359 4e-97 gb|EJK51395.1| carbonic anhydrase [Thalassiosira oceanica] 339 7e-91 ref|XP_003063214.1| predicted protein [Micromonas pusilla CCMP15... 337 3e-90 ref|XP_002504722.1| predicted protein [Micromonas commoda] >gi|2... 320 3e-85 ref|WP_006969407.1| hypothetical protein [Plesiocystis pacifica]... 302 9e-80 gb|KKS54235.1| hypothetical protein UV17_C0023G0005 [Candidatus ... 278 2e-72 gb|KKU21508.1| hypothetical protein UX32_C0002G0050 [Microgenoma... 267 4e-69 Sequences not found previously or not previously below threshold: ref|WP_013647897.1| carbonic anhydrase [Nitrosomonas sp. AL212] ... 58 3e-06 gb|AGL62602.1| hypothetical protein L336_0902 [Candidatus Saccha... 49 0.002 ref|WP_046850595.1| hypothetical protein [Nitrosomonas communis]... 48 0.003 gb|KUM92894.1| ATP-binding protein [Streptomyces cellostaticus] 39 1.5 ref|WP_013719836.1| helicase [Methanosaeta concilii] >gi|3289290... 39 1.7 ref|WP_005977714.1| outer membrane autotransporter barrel domain... 39 1.7 ref|WP_058809096.1| MULTISPECIES: hypothetical protein [Sphingop... 39 2.3 ref|WP_059537685.1| hypothetical protein [Burkholderia ubonensis... 39 2.5 ref|XP_003026427.1| hypothetical protein SCHCODRAFT_114519 [Schi... 38 3.3 gb|AEV97570.1| Methyltransferase type 11 [Niastella koreensis GR... 37 5.5 ref|WP_023707357.1| hypothetical protein [Mesorhizobium sp. LSJC... 37 5.7 ref|XP_002844770.1| WW domain-containing protein [Arthroderma ot... 37 8.9 ref|WP_058353321.1| hypothetical protein [Acetivibrio ethanolgig... 37 9.3 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|XP_002295227.1| predicted protein [Thalassiosira pseudonana ... 368 1e-99 gb|AAX08632.1| cadmium-specific carbonic anhydrase [Thalassiosir... 351 1e-94 gb|EJK51395.1| carbonic anhydrase [Thalassiosira oceanica] 331 1e-88 ref|XP_003063214.1| predicted protein [Micromonas pusilla CCMP15... 329 6e-88 ref|XP_002504722.1| predicted protein [Micromonas commoda] >gi|2... 316 5e-84 ref|WP_006969407.1| hypothetical protein [Plesiocystis pacifica]... 297 2e-78 gb|KKS54235.1| hypothetical protein UV17_C0023G0005 [Candidatus ... 272 1e-70 gb|KKU21508.1| hypothetical protein UX32_C0002G0050 [Microgenoma... 264 2e-68 ref|WP_013647897.1| carbonic anhydrase [Nitrosomonas sp. AL212] ... 144 2e-32 Sequences not found previously or not previously below threshold: ref|WP_046850595.1| hypothetical protein [Nitrosomonas communis]... 91 4e-16 ref|WP_008578631.1| hypothetical protein [candidate division TM7... 58 3e-06 gb|AGL62602.1| hypothetical protein L336_0902 [Candidatus Saccha... 51 4e-04 gb|KKW02115.1| hypothetical protein UY35_C0020G0008 [Candidatus ... 49 0.001 ref|WP_005977714.1| outer membrane autotransporter barrel domain... 43 0.13 ref|WP_013719836.1| helicase [Methanosaeta concilii] >gi|3289290... 40 0.97 ref|WP_058809096.1| MULTISPECIES: hypothetical protein [Sphingop... 39 1.5 ref|WP_026859806.1| ABC transporter ATP-binding protein [Jeotgal... 38 2.6 gb|KUM92894.1| ATP-binding protein [Streptomyces cellostaticus] 38 2.9 ref|WP_023707357.1| hypothetical protein [Mesorhizobium sp. LSJC... 38 2.9 ref|WP_019973706.1| decarboxylase [Empedobacter brevis] 38 3.3 gb|EMP36340.1| Protein Red [Chelonia mydas] 38 3.9 ref|WP_061291096.1| HAD family hydrolase [Herbidospora cretacea] 38 4.3 Database: nr90 Posted date: Apr 26, 2016 9:17 PM Number of letters in database: 999,999,869 Number of sequences in database: 2,968,906 Database: /home/tools/nr/nr90.01 Posted date: Apr 26, 2016 9:25 PM Number of letters in database: 999,999,914 Number of sequences in database: 2,935,762 Database: /home/tools/nr/nr90.02 Posted date: Apr 26, 2016 9:31 PM Number of letters in database: 999,999,821 Number of sequences in database: 2,945,360 Database: /home/tools/nr/nr90.03 Posted date: Apr 26, 2016 9:37 PM Number of letters in database: 999,999,954 Number of sequences in database: 3,021,637 Database: /home/tools/nr/nr90.04 Posted date: Apr 26, 2016 9:43 PM Number of letters in database: 999,999,583 Number of sequences in database: 2,827,669 Database: /home/tools/nr/nr90.05 Posted date: Apr 26, 2016 9:49 PM Number of letters in database: 999,999,687 Number of sequences in database: 2,825,486 Database: /home/tools/nr/nr90.06 Posted date: Apr 26, 2016 9:54 PM Number of letters in database: 999,999,983 Number of sequences in database: 3,029,836 Database: /home/tools/nr/nr90.07 Posted date: Apr 26, 2016 9:59 PM Number of letters in database: 999,999,170 Number of sequences in database: 2,783,631 Database: /home/tools/nr/nr90.08 Posted date: Apr 26, 2016 10:05 PM Number of letters in database: 999,999,929 Number of sequences in database: 2,932,162 Database: /home/tools/nr/nr90.09 Posted date: Apr 26, 2016 10:10 PM Number of letters in database: 999,999,922 Number of sequences in database: 2,760,536 Database: /home/tools/nr/nr90.10 Posted date: Apr 26, 2016 10:15 PM Number of letters in database: 999,998,575 Number of sequences in database: 2,773,472 Database: /home/tools/nr/nr90.11 Posted date: Apr 26, 2016 10:20 PM Number of letters in database: 999,999,809 Number of sequences in database: 2,868,040 Database: /home/tools/nr/nr90.12 Posted date: Apr 26, 2016 10:26 PM Number of letters in database: 999,999,981 Number of sequences in database: 2,827,487 Database: /home/tools/nr/nr90.13 Posted date: Apr 26, 2016 10:28 PM Number of letters in database: 267,539,644 Number of sequences in database: 709,923 Lambda K H 0.312 0.160 0.471 Lambda K H 0.267 0.0486 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,601,231,595 Number of Sequences: 38209907 Number of extensions: 970981683 Number of successful extensions: 2250482 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 58 Number of HSP's that attempted gapping in prelim test: 2250337 Number of HSP's gapped (non-prelim): 107 length of query: 218 length of database: 13,267,535,841 effective HSP length: 140 effective length of query: 78 effective length of database: 12,213,116,157 effective search space: 952623060246 effective search space used: 952623060246 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 84 (36.7 bits)