# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: domain1.hmmer
# target sequence database: /home/chengji/software/prosys_database/cm_lib/pdb_cm
# sequence reporting threshold: E-value <= 10
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: domain1-i5 [M=172]
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.4e-45 157.1 0.3 4.5e-45 156.7 0.3 1.2 1 3BOJA
3.5e-45 157.0 0.3 4.8e-45 156.6 0.3 1.2 1 3BOHA
1.7e-43 151.5 0.0 2.4e-43 151.1 0.0 1.2 1 3BOBA
2.8e-43 150.8 0.1 3.7e-43 150.5 0.1 1.2 1 3UK8B
3e-43 150.7 0.1 4e-43 150.3 0.1 1.2 1 3UK8A
------ inclusion threshold ------
0.92 12.4 0.0 1.6 11.7 0.0 1.3 1 5KZ8A
Domain annotation for each sequence (and alignments):
>> 3BOJA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 156.7 0.3 1.5e-49 4.5e-45 2 171 .. 28 180 .. 27 181 .. 0.98
Alignments for each domain:
== domain 1 score: 156.7 bits; conditional E-value: 1.5e-49
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxx RF
domain1-i5 2 llveveakgklsCvDGReedeeskavlgvpGGdlgelllaalaalrrgtdveeklsellaalreaggkfyvHtddhaeepedvGCGhldllltirleey 100
+v+v+++g l+CvDGR +d+++ +++++pGG +++ a++r++t++e+ l++++++++++g++++vH+d++++ ++GCG+++l+ t+r++++
3BOJA 28 EMVDVDPQGILKCVDGRGSDNTQFCGPKMPGGIYAI------AHNRGVTTLEG-LKQITKEVASKGHVPSVHGDHSSD---MLGCGFFKLWVTGRFDDM 116
589*********************************......99*********.*********************988...8***************** PP
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF
domain1-i5 101 glrstqadleeifaklegkgavlevLeGeHeEkavvvnavegttldpnrvakpasagdqaFvvdawaaekl 171
g++++q+d+++ ++++e++g+v+e+++G+H+Ek+v++n ve++tl+p++ +dq+F+vd waa k+
3BOJA 117 GYPRPQFDADQGAKAVENAGGVIEMHHGSHAEKVVYINLVENKTLEPDE-------DDQRFIVDGWAAGKF 180
*************************************************.......9**********9886 PP
>> 3BOHA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 156.6 0.3 1.6e-49 4.8e-45 2 171 .. 32 184 .. 31 185 .. 0.98
Alignments for each domain:
== domain 1 score: 156.6 bits; conditional E-value: 1.6e-49
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxx RF
domain1-i5 2 llveveakgklsCvDGReedeeskavlgvpGGdlgelllaalaalrrgtdveeklsellaalreaggkfyvHtddhaeepedvGCGhldllltirleey 100
+v+v+++g l+CvDGR +d+++ +++++pGG +++ a++r++t++e+ l++++++++++g++++vH+d++++ ++GCG+++l+ t+r++++
3BOHA 32 EMVDVDPQGILKCVDGRGSDNTQFCGPKMPGGIYAI------AHNRGVTTLEG-LKQITKEVASKGHVPSVHGDHSSD---MLGCGFFKLWVTGRFDDM 120
589*********************************......99*********.*********************988...8***************** PP
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF
domain1-i5 101 glrstqadleeifaklegkgavlevLeGeHeEkavvvnavegttldpnrvakpasagdqaFvvdawaaekl 171
g++++q+d+++ ++++e++g+v+e+++G+H+Ek+v++n ve++tl+p++ +dq+F+vd waa k+
3BOHA 121 GYPRPQFDADQGAKAVENAGGVIEMHHGSHAEKVVYINLVENKTLEPDE-------DDQRFIVDGWAAGKF 184
*************************************************.......9**********9886 PP
>> 3BOBA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 151.1 0.0 7.8e-48 2.4e-43 3 171 .. 29 180 .. 27 181 .. 0.98
Alignments for each domain:
== domain 1 score: 151.1 bits; conditional E-value: 7.8e-48
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxx RF
domain1-i5 3 lveveakgklsCvDGReedeeskavlgvpGGdlgelllaalaalrrgtdveeklsellaalreaggkfyvHtddhaeepedvGCGhldllltirleeyg 101
lv+v+++g l+CvDGR +d+++++++++pGG +++ a++r++t++e+ l++++++++++g+ ++vH+d++++ ++GCG+++l+ t+r++++g
3BOBA 29 LVDVRPEGILKCVDGRGSDNTRMGGPKMPGGIYAI------AHNRGVTSIEG-LKQITKEVASKGHLPSVHGDHSSD---MLGCGFFKLWVTGRFDDMG 117
799********************************......99*********.*********************988...8****************** PP
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF
domain1-i5 102 lrstqadleeifaklegkgavlevLeGeHeEkavvvnavegttldpnrvakpasagdqaFvvdawaaekl 171
++++q+d+++ +++++++g+ +e+++G+H+Ek+v++n ++tl+pn+ +dq+F+vd waa+k+
3BOBA 118 YPRPQFDADQGANAVKDAGGIIEMHHGSHTEKVVYINLLANKTLEPNE-------NDQRFIVDGWAADKF 180
************************************************.......9***********997 PP
>> 3UK8B
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 150.5 0.1 1.2e-47 3.7e-43 4 171 .. 30 180 .. 27 181 .. 0.97
Alignments for each domain:
== domain 1 score: 150.5 bits; conditional E-value: 1.2e-47
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxx RF
domain1-i5 4 veveakgklsCvDGReedeeskavlgvpGGdlgelllaalaalrrgtdveeklsellaalreaggkfyvHtddhaeepedvGCGhldllltirleeygl 102
+v+++g l+CvDGR +d+++ +++++pGG +++ a++r++t++e+ l++++++++++g++++vH+d++++ ++GCG+++l+lt+r++++g+
3UK8B 30 KRVDPQGILKCVDGRGSDNTQFGGPKMPGGIYAI------AHNRGVTTLEG-LKDITREVASKGHVPSVHGDHSSD---MLGCGFFKLWLTGRFDDMGY 118
57999*****************************......99*********.*********************988...8******************* PP
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF
domain1-i5 103 rstqadleeifaklegkgavlevLeGeHeEkavvvnavegttldpnrvakpasagdqaFvvdawaaekl 171
+++++d+++ + +++++g+v+e+++G+HeEk+v++n v+g+tl+pn+ +dq+F+vd waa+k+
3UK8B 119 PRPEFDADQGALAVRAAGGVIEMHHGSHEEKVVYINLVSGMTLEPNE-------HDQRFIVDGWAASKF 180
***********************************************.......9***********986 PP
>> 3UK8A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 150.3 0.1 1.3e-47 4e-43 4 171 .. 35 185 .. 32 186 .. 0.97
Alignments for each domain:
== domain 1 score: 150.3 bits; conditional E-value: 1.3e-47
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxx RF
domain1-i5 4 veveakgklsCvDGReedeeskavlgvpGGdlgelllaalaalrrgtdveeklsellaalreaggkfyvHtddhaeepedvGCGhldllltirleeygl 102
+v+++g l+CvDGR +d+++ +++++pGG +++ a++r++t++e+ l++++++++++g++++vH+d++++ ++GCG+++l+lt+r++++g+
3UK8A 35 KRVDPQGILKCVDGRGSDNTQFGGPKMPGGIYAI------AHNRGVTTLEG-LKDITREVASKGHVPSVHGDHSSD---MLGCGFFKLWLTGRFDDMGY 123
57999*****************************......99*********.*********************988...8******************* PP
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF
domain1-i5 103 rstqadleeifaklegkgavlevLeGeHeEkavvvnavegttldpnrvakpasagdqaFvvdawaaekl 171
+++++d+++ + +++++g+v+e+++G+HeEk+v++n v+g+tl+pn+ +dq+F+vd waa+k+
3UK8A 124 PRPEFDADQGALAVRAAGGVIEMHHGSHEEKVVYINLVSGMTLEPNE-------HDQRFIVDGWAASKF 185
***********************************************.......9***********986 PP
>> 5KZ8A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.7 0.0 5.3e-05 1.6 42 87 .. 94 150 .. 79 169 .. 0.82
Alignments for each domain:
== domain 1 score: 11.7 bits; conditional E-value: 5.3e-05
..xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx.............xxxxx RF
domain1-i5 42 alaalrrgtdvee.klsellaalreaggkfyvHtddhaee..........pedvGCG 87
++a+ r +++ k++++++a++ + kf vH+d +ae+ +d+GCG
5KZ8A 94 LVAHGRMKEKEARaKFRQIVSAVQYCHQKFIVHRDLKAENllldadmnikIADFGCG 150
344444443333247*********************999999999999999*****9 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (172 nodes)
Target sequences: 180940 (47973432 residues searched)
Passed MSV filter: 3976 (0.0219741); expected 3618.8 (0.02)
Passed bias filter: 3522 (0.019465); expected 3618.8 (0.02)
Passed Vit filter: 281 (0.001553); expected 180.9 (0.001)
Passed Fwd filter: 6 (3.31602e-05); expected 1.8 (1e-05)
Initial search space (Z): 180940 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 1.20u 0.15s 00:00:01.35 Elapsed: 00:00:03.04
# Mc/sec: 2714.29
//
[ok]