Name "main::EXEC_LIMIT_HRS" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/run_multicom_novel.pl line 18.
Name "main::Eva_check_domain_out" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/run_multicom_novel.pl line 566.
Name "main::Eva_check_dir" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/run_multicom_novel.pl line 69.
Name "main::stauts" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/run_multicom_novel.pl line 423.
Name "main::topmodel_num" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/run_multicom_novel.pl line 65.
Name "main::best_modelname" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/run_multicom_novel.pl line 663.
Name "main::domain_subfolder_eva" used only once: possible typo at /home/casp13/MULTICOM_NOVEL/scripts/run_multicom_novel.pl line 566.
Database (/home/casp13/MULTICOM_NOVEL/DB/rspdb) was detected!

##############  Start running Target domain1 

/home/casp11/multicom/ZCA_155705426023607/domain1/novel/DeepSF
/home/casp11/multicom/ZCA_155705426023607/domain1/novel/MODELS
/home/casp11/multicom/ZCA_155705426023607/domain1/novel/EVALUATION
/home/casp11/multicom/ZCA_155705426023607/domain1/novel/EVALUATION/models
/home/casp11/multicom/ZCA_155705426023607/domain1/novel/EVALUATION/output
/home/casp11/multicom/ZCA_155705426023607/domain1/novel/TOP5
/home/casp11/multicom/ZCA_155705426023607/domain1/novel/CHECK
/home/casp11/multicom/ZCA_155705426023607/domain1/novel/HHsearch12
/home/casp11/multicom/ZCA_155705426023607/domain1/novel/HHsearch15
/home/casp11/multicom/ZCA_155705426023607/domain1/novel/HHsuite
/home/casp11/multicom/ZCA_155705426023607/domain1/novel/HMMER
/home/casp11/multicom/ZCA_155705426023607/domain1/novel/DomainCheck
Create folders
perl /home/casp13/MULTICOM_NOVEL/scripts/createfolder.pl /home/casp11/multicom/ZCA_155705426023607/domain1/novel &> /home/casp11/multicom/ZCA_155705426023607/domain1/novel/createfolder.log 
Model generation
perl /home/casp13/MULTICOM_NOVEL/scripts/gen_models.pl /home/casp11/multicom/ZCA_155705426023607/domain1/novel/domain1.fasta domain1 /home/casp11/multicom/ZCA_155705426023607/domain1/novel /home/casp13/MULTICOM_NOVEL/scripts /home/casp13/MULTICOM_NOVEL/DB/rspdb &> /home/casp11/multicom/ZCA_155705426023607/domain1/novel/gen_model.log 
Start to rank models 
generating SBROD score
   ./assess_protein /home/casp11/multicom/ZCA_155705426023607/domain1/novel/EVALUATION/models/*pdb &> /home/casp11/multicom/ZCA_155705426023607/domain1/novel/EVALUATION/output/SBROD_ranking.txt 

SBROD modeling finished within 0.0241666666666667 hrs!

Checking /home/casp11/multicom/ZCA_155705426023607/domain1/novel/EVALUATION/output/SBROD_ranking.txt
perl /home/casp13/MULTICOM_NOVEL/scripts/alignment_check_easy_V1.pl /home/casp11/multicom/ZCA_155705426023607/domain1/novel  /home/casp11/multicom/ZCA_155705426023607/domain1/novel/domain1.fasta domain1  &>> /home/casp11/multicom/ZCA_155705426023607/domain1/novel/alignment_check_easy.log
Start to format the top 5 models 
perl /home/casp13/MULTICOM_NOVEL/scripts/formatCASPmodel.pl  /home/casp11/multicom/ZCA_155705426023607/domain1/novel /home/casp11/multicom/ZCA_155705426023607/domain1/novel/domain1.fasta domain1 &>> /home/casp11/multicom/ZCA_155705426023607/domain1/novel/formatCASPmodel.log
Start to refine models to top 5 models 
MULTICOM_NOVEL modeling finish! Total time: <4.37361111111111> hrs!