BLASTP 2.2.17 [Aug-26-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= domain1
(218 letters)
Database: pdb_cm
180,940 sequences; 47,973,432 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
3BOHA 359 3e-99
3BOJA 356 1e-98
3UK8A 352 2e-97
3UK8B 351 6e-97
3BOBA 346 1e-95
>3BOHA
Length = 213
Score = 359 bits (921), Expect = 3e-99, Method: Composition-based stats.
Identities = 168/209 (80%), Positives = 188/209 (89%)
Query: 9 PLTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGG 68
LTP IVAALQ RGW+AEI++ S+ +MV+VDP GILKCVDGRGSDNT+ GPKMPGG
Sbjct: 4 SLTPDQIVAALQERGWQAEIVTEFSLLNEMVDVDPQGILKCVDGRGSDNTQFCGPKMPGG 63
Query: 69 IYAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYP 128
IYAIAHNRG T+++GLK+ITKEVASKGHVPSVHGDHS+DMLGCGFF+LWVTG FD MGYP
Sbjct: 64 IYAIAHNRGVTTLEGLKQITKEVASKGHVPSVHGDHSSDMLGCGFFKLWVTGRFDDMGYP 123
Query: 129 RPEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIK 188
RP+FDADQGA AV+ +GGVIEMHHGSH EKVVYINLVENKTLEPDE+DQRFIVDGWAA K
Sbjct: 124 RPQFDADQGAKAVENAGGVIEMHHGSHAEKVVYINLVENKTLEPDEDDQRFIVDGWAAGK 183
Query: 189 FNLDVVKFLVAAAATVEMLGGPRIAKIVV 217
F LDV KFL+AAAATVEMLGGP+ AKIV+
Sbjct: 184 FGLDVPKFLIAAAATVEMLGGPKKAKIVI 212
>3BOJA
Length = 209
Score = 356 bits (915), Expect = 1e-98, Method: Composition-based stats.
Identities = 168/208 (80%), Positives = 188/208 (90%)
Query: 10 LTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGGI 69
LTP IVAALQ RGW+AEI++ S+ +MV+VDP GILKCVDGRGSDNT+ GPKMPGGI
Sbjct: 1 LTPDQIVAALQERGWQAEIVTEFSLLNEMVDVDPQGILKCVDGRGSDNTQFCGPKMPGGI 60
Query: 70 YAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYPR 129
YAIAHNRG T+++GLK+ITKEVASKGHVPSVHGDHS+DMLGCGFF+LWVTG FD MGYPR
Sbjct: 61 YAIAHNRGVTTLEGLKQITKEVASKGHVPSVHGDHSSDMLGCGFFKLWVTGRFDDMGYPR 120
Query: 130 PEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIKF 189
P+FDADQGA AV+ +GGVIEMHHGSH EKVVYINLVENKTLEPDE+DQRFIVDGWAA KF
Sbjct: 121 PQFDADQGAKAVENAGGVIEMHHGSHAEKVVYINLVENKTLEPDEDDQRFIVDGWAAGKF 180
Query: 190 NLDVVKFLVAAAATVEMLGGPRIAKIVV 217
LDV KFL+AAAATVEMLGGP+ AKIV+
Sbjct: 181 GLDVPKFLIAAAATVEMLGGPKKAKIVI 208
>3UK8A
Length = 214
Score = 352 bits (905), Expect = 2e-97, Method: Composition-based stats.
Identities = 161/209 (77%), Positives = 185/209 (88%)
Query: 9 PLTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGG 68
+TP IV+AL+ RGW+A I+ AS++S ++ VDP GILKCVDGRGSDNT+ GPKMPGG
Sbjct: 5 SITPPQIVSALRGRGWKASIVKASTMSSELKRVDPQGILKCVDGRGSDNTQFGGPKMPGG 64
Query: 69 IYAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYP 128
IYAIAHNRG T+++GLK+IT+EVASKGHVPSVHGDHS+DMLGCGFF+LW+TG FD MGYP
Sbjct: 65 IYAIAHNRGVTTLEGLKDITREVASKGHVPSVHGDHSSDMLGCGFFKLWLTGRFDDMGYP 124
Query: 129 RPEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIK 188
RPEFDADQGA AV+ +GGVIEMHHGSH EKVVYINLV TLEP+E+DQRFIVDGWAA K
Sbjct: 125 RPEFDADQGALAVRAAGGVIEMHHGSHEEKVVYINLVSGMTLEPNEHDQRFIVDGWAASK 184
Query: 189 FNLDVVKFLVAAAATVEMLGGPRIAKIVV 217
F LDVVKFLVAAAATVEMLGGP+ AKIV+
Sbjct: 185 FGLDVVKFLVAAAATVEMLGGPKKAKIVI 213
>3UK8B
Length = 209
Score = 351 bits (901), Expect = 6e-97, Method: Composition-based stats.
Identities = 161/208 (77%), Positives = 185/208 (88%)
Query: 10 LTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGGI 69
+TP IV+AL+ RGW+A I+ AS++S ++ VDP GILKCVDGRGSDNT+ GPKMPGGI
Sbjct: 1 ITPPQIVSALRGRGWKASIVKASTMSSELKRVDPQGILKCVDGRGSDNTQFGGPKMPGGI 60
Query: 70 YAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYPR 129
YAIAHNRG T+++GLK+IT+EVASKGHVPSVHGDHS+DMLGCGFF+LW+TG FD MGYPR
Sbjct: 61 YAIAHNRGVTTLEGLKDITREVASKGHVPSVHGDHSSDMLGCGFFKLWLTGRFDDMGYPR 120
Query: 130 PEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIKF 189
PEFDADQGA AV+ +GGVIEMHHGSH EKVVYINLV TLEP+E+DQRFIVDGWAA KF
Sbjct: 121 PEFDADQGALAVRAAGGVIEMHHGSHEEKVVYINLVSGMTLEPNEHDQRFIVDGWAASKF 180
Query: 190 NLDVVKFLVAAAATVEMLGGPRIAKIVV 217
LDVVKFLVAAAATVEMLGGP+ AKIV+
Sbjct: 181 GLDVVKFLVAAAATVEMLGGPKKAKIVI 208
>3BOBA
Length = 209
Score = 346 bits (889), Expect = 1e-95, Method: Composition-based stats.
Identities = 164/208 (78%), Positives = 188/208 (90%)
Query: 10 LTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGGI 69
++P I ALQ RGW+AEI++ +S++ +V+V P GILKCVDGRGSDNTRM GPKMPGGI
Sbjct: 1 ISPAQIAEALQGRGWDAEIVTDASMAGQLVDVRPEGILKCVDGRGSDNTRMGGPKMPGGI 60
Query: 70 YAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYPR 129
YAIAHNRG TS++GLK+ITKEVASKGH+PSVHGDHS+DMLGCGFF+LWVTG FD MGYPR
Sbjct: 61 YAIAHNRGVTSIEGLKQITKEVASKGHLPSVHGDHSSDMLGCGFFKLWVTGRFDDMGYPR 120
Query: 130 PEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIKF 189
P+FDADQGA AVK++GG+IEMHHGSHTEKVVYINL+ NKTLEP+ENDQRFIVDGWAA KF
Sbjct: 121 PQFDADQGANAVKDAGGIIEMHHGSHTEKVVYINLLANKTLEPNENDQRFIVDGWAADKF 180
Query: 190 NLDVVKFLVAAAATVEMLGGPRIAKIVV 217
LDV KFL+AAAATVEMLGGP+ AKIVV
Sbjct: 181 GLDVPKFLIAAAATVEMLGGPKNAKIVV 208
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
3BOHA 453 e-127
3BOJA 451 e-127
3BOBA 442 e-124
3UK8A 440 e-124
3UK8B 440 e-124
Sequences not found previously or not previously below threshold:
3O8OB 37 0.030
3O8OF 37 0.030
4C7UA 36 0.041
4C7UB 36 0.041
4C7UC 36 0.041
4C7UE 36 0.041
4C7UG 36 0.041
4C7UF 35 0.12
CONVERGED!
>3BOHA
Length = 213
Score = 453 bits (1165), Expect = e-127, Method: Composition-based stats.
Identities = 168/209 (80%), Positives = 188/209 (89%)
Query: 9 PLTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGG 68
LTP IVAALQ RGW+AEI++ S+ +MV+VDP GILKCVDGRGSDNT+ GPKMPGG
Sbjct: 4 SLTPDQIVAALQERGWQAEIVTEFSLLNEMVDVDPQGILKCVDGRGSDNTQFCGPKMPGG 63
Query: 69 IYAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYP 128
IYAIAHNRG T+++GLK+ITKEVASKGHVPSVHGDHS+DMLGCGFF+LWVTG FD MGYP
Sbjct: 64 IYAIAHNRGVTTLEGLKQITKEVASKGHVPSVHGDHSSDMLGCGFFKLWVTGRFDDMGYP 123
Query: 129 RPEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIK 188
RP+FDADQGA AV+ +GGVIEMHHGSH EKVVYINLVENKTLEPDE+DQRFIVDGWAA K
Sbjct: 124 RPQFDADQGAKAVENAGGVIEMHHGSHAEKVVYINLVENKTLEPDEDDQRFIVDGWAAGK 183
Query: 189 FNLDVVKFLVAAAATVEMLGGPRIAKIVV 217
F LDV KFL+AAAATVEMLGGP+ AKIV+
Sbjct: 184 FGLDVPKFLIAAAATVEMLGGPKKAKIVI 212
>3BOJA
Length = 209
Score = 451 bits (1161), Expect = e-127, Method: Composition-based stats.
Identities = 168/208 (80%), Positives = 188/208 (90%)
Query: 10 LTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGGI 69
LTP IVAALQ RGW+AEI++ S+ +MV+VDP GILKCVDGRGSDNT+ GPKMPGGI
Sbjct: 1 LTPDQIVAALQERGWQAEIVTEFSLLNEMVDVDPQGILKCVDGRGSDNTQFCGPKMPGGI 60
Query: 70 YAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYPR 129
YAIAHNRG T+++GLK+ITKEVASKGHVPSVHGDHS+DMLGCGFF+LWVTG FD MGYPR
Sbjct: 61 YAIAHNRGVTTLEGLKQITKEVASKGHVPSVHGDHSSDMLGCGFFKLWVTGRFDDMGYPR 120
Query: 130 PEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIKF 189
P+FDADQGA AV+ +GGVIEMHHGSH EKVVYINLVENKTLEPDE+DQRFIVDGWAA KF
Sbjct: 121 PQFDADQGAKAVENAGGVIEMHHGSHAEKVVYINLVENKTLEPDEDDQRFIVDGWAAGKF 180
Query: 190 NLDVVKFLVAAAATVEMLGGPRIAKIVV 217
LDV KFL+AAAATVEMLGGP+ AKIV+
Sbjct: 181 GLDVPKFLIAAAATVEMLGGPKKAKIVI 208
>3BOBA
Length = 209
Score = 442 bits (1137), Expect = e-124, Method: Composition-based stats.
Identities = 164/208 (78%), Positives = 188/208 (90%)
Query: 10 LTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGGI 69
++P I ALQ RGW+AEI++ +S++ +V+V P GILKCVDGRGSDNTRM GPKMPGGI
Sbjct: 1 ISPAQIAEALQGRGWDAEIVTDASMAGQLVDVRPEGILKCVDGRGSDNTRMGGPKMPGGI 60
Query: 70 YAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYPR 129
YAIAHNRG TS++GLK+ITKEVASKGH+PSVHGDHS+DMLGCGFF+LWVTG FD MGYPR
Sbjct: 61 YAIAHNRGVTSIEGLKQITKEVASKGHLPSVHGDHSSDMLGCGFFKLWVTGRFDDMGYPR 120
Query: 130 PEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIKF 189
P+FDADQGA AVK++GG+IEMHHGSHTEKVVYINL+ NKTLEP+ENDQRFIVDGWAA KF
Sbjct: 121 PQFDADQGANAVKDAGGIIEMHHGSHTEKVVYINLLANKTLEPNENDQRFIVDGWAADKF 180
Query: 190 NLDVVKFLVAAAATVEMLGGPRIAKIVV 217
LDV KFL+AAAATVEMLGGP+ AKIVV
Sbjct: 181 GLDVPKFLIAAAATVEMLGGPKNAKIVV 208
>3UK8A
Length = 214
Score = 440 bits (1133), Expect = e-124, Method: Composition-based stats.
Identities = 161/209 (77%), Positives = 185/209 (88%)
Query: 9 PLTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGG 68
+TP IV+AL+ RGW+A I+ AS++S ++ VDP GILKCVDGRGSDNT+ GPKMPGG
Sbjct: 5 SITPPQIVSALRGRGWKASIVKASTMSSELKRVDPQGILKCVDGRGSDNTQFGGPKMPGG 64
Query: 69 IYAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYP 128
IYAIAHNRG T+++GLK+IT+EVASKGHVPSVHGDHS+DMLGCGFF+LW+TG FD MGYP
Sbjct: 65 IYAIAHNRGVTTLEGLKDITREVASKGHVPSVHGDHSSDMLGCGFFKLWLTGRFDDMGYP 124
Query: 129 RPEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIK 188
RPEFDADQGA AV+ +GGVIEMHHGSH EKVVYINLV TLEP+E+DQRFIVDGWAA K
Sbjct: 125 RPEFDADQGALAVRAAGGVIEMHHGSHEEKVVYINLVSGMTLEPNEHDQRFIVDGWAASK 184
Query: 189 FNLDVVKFLVAAAATVEMLGGPRIAKIVV 217
F LDVVKFLVAAAATVEMLGGP+ AKIV+
Sbjct: 185 FGLDVVKFLVAAAATVEMLGGPKKAKIVI 213
>3UK8B
Length = 209
Score = 440 bits (1131), Expect = e-124, Method: Composition-based stats.
Identities = 161/208 (77%), Positives = 185/208 (88%)
Query: 10 LTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGGI 69
+TP IV+AL+ RGW+A I+ AS++S ++ VDP GILKCVDGRGSDNT+ GPKMPGGI
Sbjct: 1 ITPPQIVSALRGRGWKASIVKASTMSSELKRVDPQGILKCVDGRGSDNTQFGGPKMPGGI 60
Query: 70 YAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYPR 129
YAIAHNRG T+++GLK+IT+EVASKGHVPSVHGDHS+DMLGCGFF+LW+TG FD MGYPR
Sbjct: 61 YAIAHNRGVTTLEGLKDITREVASKGHVPSVHGDHSSDMLGCGFFKLWLTGRFDDMGYPR 120
Query: 130 PEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIKF 189
PEFDADQGA AV+ +GGVIEMHHGSH EKVVYINLV TLEP+E+DQRFIVDGWAA KF
Sbjct: 121 PEFDADQGALAVRAAGGVIEMHHGSHEEKVVYINLVSGMTLEPNEHDQRFIVDGWAASKF 180
Query: 190 NLDVVKFLVAAAATVEMLGGPRIAKIVV 217
LDVVKFLVAAAATVEMLGGP+ AKIV+
Sbjct: 181 GLDVVKFLVAAAATVEMLGGPKKAKIVI 208
>3O8OB
Length = 763
Score = 36.9 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 14 DIVAALQSRGWEAEII--SASSISQDMVEVDPAGILKCVDGRGSDNTRMA--GPKMPGGI 69
DIV+ +SRG I+ + +I+ D+ + P+ + K + R +TR+ G GG
Sbjct: 234 DIVSKHRSRGKRTTIVVVAEGAIAADLTPISPSDVHKVLVDRLGLDTRITTLGHVQRGGT 293
Query: 70 YAIAHNRGTTSVDGLKEITKEVASKGHVPS 99
A+A++R ++ GL+ + + S PS
Sbjct: 294 -AVAYDRILATLQGLEAVNAVLESTPDTPS 322
>3O8OF
Length = 762
Score = 36.9 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 14 DIVAALQSRGWEAEII--SASSISQDMVEVDPAGILKCVDGRGSDNTRMA--GPKMPGGI 69
DIV+ +SRG I+ + +I+ D+ + P+ + K + R +TR+ G GG
Sbjct: 233 DIVSKHRSRGKRTTIVVVAEGAIAADLTPISPSDVHKVLVDRLGLDTRITTLGHVQRGGT 292
Query: 70 YAIAHNRGTTSVDGLKEITKEVASKGHVPS 99
A+A++R ++ GL+ + + S PS
Sbjct: 293 -AVAYDRILATLQGLEAVNAVLESTPDTPS 321
>4C7UA
Length = 203
Score = 36.1 bits (82), Expect = 0.041, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 125 MGYPRPEFDADQGAAAVKESGGVIEMHHGSHTEKVV--YINLVENKTLEPDENDQRFIVD 182
M + P+ D GA SG ++++HH H + V Y N +E ++ D +V
Sbjct: 1 MTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVK 60
Query: 183 GWAAIKFN 190
+AIKFN
Sbjct: 61 LQSAIKFN 68
>4C7UB
Length = 202
Score = 36.1 bits (82), Expect = 0.041, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 125 MGYPRPEFDADQGAAAVKESGGVIEMHHGSHTEKVV--YINLVENKTLEPDENDQRFIVD 182
M + P+ D GA SG ++++HH H + V Y N +E ++ D +V
Sbjct: 2 MTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVK 61
Query: 183 GWAAIKFN 190
+AIKFN
Sbjct: 62 LQSAIKFN 69
>4C7UC
Length = 203
Score = 36.1 bits (82), Expect = 0.041, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 125 MGYPRPEFDADQGAAAVKESGGVIEMHHGSHTEKVV--YINLVENKTLEPDENDQRFIVD 182
M + P+ D GA SG ++++HH H + V Y N +E ++ D +V
Sbjct: 2 MTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVK 61
Query: 183 GWAAIKFN 190
+AIKFN
Sbjct: 62 LQSAIKFN 69
>4C7UE
Length = 201
Score = 36.1 bits (82), Expect = 0.041, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 125 MGYPRPEFDADQGAAAVKESGGVIEMHHGSHTEKVV--YINLVENKTLEPDENDQRFIVD 182
M + P+ D GA SG ++++HH H + V Y N +E ++ D +V
Sbjct: 1 MTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVK 60
Query: 183 GWAAIKFN 190
+AIKFN
Sbjct: 61 LQSAIKFN 68
>4C7UG
Length = 202
Score = 36.1 bits (82), Expect = 0.041, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 125 MGYPRPEFDADQGAAAVKESGGVIEMHHGSHTEKVV--YINLVENKTLEPDENDQRFIVD 182
M + P+ D GA SG ++++HH H + V Y N +E ++ D +V
Sbjct: 1 MTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVK 60
Query: 183 GWAAIKFN 190
+AIKFN
Sbjct: 61 LQSAIKFN 68
>4C7UF
Length = 202
Score = 34.5 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 130 PEFDADQGAAAVKESGGVIEMHHGSHTEKVV--YINLVENKTLEPDENDQRFIVDGWAAI 187
P+ D GA SG ++++HH H + V Y N +E ++ D +V +AI
Sbjct: 5 PDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVKLQSAI 64
Query: 188 KFN 190
KFN
Sbjct: 65 KFN 67
Database: pdb_cm
Posted date: Oct 3, 2018 2:50 PM
Number of letters in database: 47,973,432
Number of sequences in database: 180,940
Lambda K H
0.303 0.144 0.455
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,153,050
Number of Sequences: 180940
Number of extensions: 2740249
Number of successful extensions: 6287
Number of sequences better than 1.0: 13
Number of HSP's better than 1.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 6277
Number of HSP's gapped (non-prelim): 22
length of query: 218
length of database: 47,973,432
effective HSP length: 103
effective length of query: 115
effective length of database: 29,336,612
effective search space: 3373710380
effective search space used: 3373710380
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.7 bits)
S2: 71 (31.8 bits)