BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= domain1 (218 letters) Database: pdb_cm 180,940 sequences; 47,973,432 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 3BOHA 359 3e-99 3BOJA 356 1e-98 3UK8A 352 2e-97 3UK8B 351 6e-97 3BOBA 346 1e-95 >3BOHA Length = 213 Score = 359 bits (921), Expect = 3e-99, Method: Composition-based stats. Identities = 168/209 (80%), Positives = 188/209 (89%) Query: 9 PLTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGG 68 LTP IVAALQ RGW+AEI++ S+ +MV+VDP GILKCVDGRGSDNT+ GPKMPGG Sbjct: 4 SLTPDQIVAALQERGWQAEIVTEFSLLNEMVDVDPQGILKCVDGRGSDNTQFCGPKMPGG 63 Query: 69 IYAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYP 128 IYAIAHNRG T+++GLK+ITKEVASKGHVPSVHGDHS+DMLGCGFF+LWVTG FD MGYP Sbjct: 64 IYAIAHNRGVTTLEGLKQITKEVASKGHVPSVHGDHSSDMLGCGFFKLWVTGRFDDMGYP 123 Query: 129 RPEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIK 188 RP+FDADQGA AV+ +GGVIEMHHGSH EKVVYINLVENKTLEPDE+DQRFIVDGWAA K Sbjct: 124 RPQFDADQGAKAVENAGGVIEMHHGSHAEKVVYINLVENKTLEPDEDDQRFIVDGWAAGK 183 Query: 189 FNLDVVKFLVAAAATVEMLGGPRIAKIVV 217 F LDV KFL+AAAATVEMLGGP+ AKIV+ Sbjct: 184 FGLDVPKFLIAAAATVEMLGGPKKAKIVI 212 >3BOJA Length = 209 Score = 356 bits (915), Expect = 1e-98, Method: Composition-based stats. Identities = 168/208 (80%), Positives = 188/208 (90%) Query: 10 LTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGGI 69 LTP IVAALQ RGW+AEI++ S+ +MV+VDP GILKCVDGRGSDNT+ GPKMPGGI Sbjct: 1 LTPDQIVAALQERGWQAEIVTEFSLLNEMVDVDPQGILKCVDGRGSDNTQFCGPKMPGGI 60 Query: 70 YAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYPR 129 YAIAHNRG T+++GLK+ITKEVASKGHVPSVHGDHS+DMLGCGFF+LWVTG FD MGYPR Sbjct: 61 YAIAHNRGVTTLEGLKQITKEVASKGHVPSVHGDHSSDMLGCGFFKLWVTGRFDDMGYPR 120 Query: 130 PEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIKF 189 P+FDADQGA AV+ +GGVIEMHHGSH EKVVYINLVENKTLEPDE+DQRFIVDGWAA KF Sbjct: 121 PQFDADQGAKAVENAGGVIEMHHGSHAEKVVYINLVENKTLEPDEDDQRFIVDGWAAGKF 180 Query: 190 NLDVVKFLVAAAATVEMLGGPRIAKIVV 217 LDV KFL+AAAATVEMLGGP+ AKIV+ Sbjct: 181 GLDVPKFLIAAAATVEMLGGPKKAKIVI 208 >3UK8A Length = 214 Score = 352 bits (905), Expect = 2e-97, Method: Composition-based stats. Identities = 161/209 (77%), Positives = 185/209 (88%) Query: 9 PLTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGG 68 +TP IV+AL+ RGW+A I+ AS++S ++ VDP GILKCVDGRGSDNT+ GPKMPGG Sbjct: 5 SITPPQIVSALRGRGWKASIVKASTMSSELKRVDPQGILKCVDGRGSDNTQFGGPKMPGG 64 Query: 69 IYAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYP 128 IYAIAHNRG T+++GLK+IT+EVASKGHVPSVHGDHS+DMLGCGFF+LW+TG FD MGYP Sbjct: 65 IYAIAHNRGVTTLEGLKDITREVASKGHVPSVHGDHSSDMLGCGFFKLWLTGRFDDMGYP 124 Query: 129 RPEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIK 188 RPEFDADQGA AV+ +GGVIEMHHGSH EKVVYINLV TLEP+E+DQRFIVDGWAA K Sbjct: 125 RPEFDADQGALAVRAAGGVIEMHHGSHEEKVVYINLVSGMTLEPNEHDQRFIVDGWAASK 184 Query: 189 FNLDVVKFLVAAAATVEMLGGPRIAKIVV 217 F LDVVKFLVAAAATVEMLGGP+ AKIV+ Sbjct: 185 FGLDVVKFLVAAAATVEMLGGPKKAKIVI 213 >3UK8B Length = 209 Score = 351 bits (901), Expect = 6e-97, Method: Composition-based stats. Identities = 161/208 (77%), Positives = 185/208 (88%) Query: 10 LTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGGI 69 +TP IV+AL+ RGW+A I+ AS++S ++ VDP GILKCVDGRGSDNT+ GPKMPGGI Sbjct: 1 ITPPQIVSALRGRGWKASIVKASTMSSELKRVDPQGILKCVDGRGSDNTQFGGPKMPGGI 60 Query: 70 YAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYPR 129 YAIAHNRG T+++GLK+IT+EVASKGHVPSVHGDHS+DMLGCGFF+LW+TG FD MGYPR Sbjct: 61 YAIAHNRGVTTLEGLKDITREVASKGHVPSVHGDHSSDMLGCGFFKLWLTGRFDDMGYPR 120 Query: 130 PEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIKF 189 PEFDADQGA AV+ +GGVIEMHHGSH EKVVYINLV TLEP+E+DQRFIVDGWAA KF Sbjct: 121 PEFDADQGALAVRAAGGVIEMHHGSHEEKVVYINLVSGMTLEPNEHDQRFIVDGWAASKF 180 Query: 190 NLDVVKFLVAAAATVEMLGGPRIAKIVV 217 LDVVKFLVAAAATVEMLGGP+ AKIV+ Sbjct: 181 GLDVVKFLVAAAATVEMLGGPKKAKIVI 208 >3BOBA Length = 209 Score = 346 bits (889), Expect = 1e-95, Method: Composition-based stats. Identities = 164/208 (78%), Positives = 188/208 (90%) Query: 10 LTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGGI 69 ++P I ALQ RGW+AEI++ +S++ +V+V P GILKCVDGRGSDNTRM GPKMPGGI Sbjct: 1 ISPAQIAEALQGRGWDAEIVTDASMAGQLVDVRPEGILKCVDGRGSDNTRMGGPKMPGGI 60 Query: 70 YAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYPR 129 YAIAHNRG TS++GLK+ITKEVASKGH+PSVHGDHS+DMLGCGFF+LWVTG FD MGYPR Sbjct: 61 YAIAHNRGVTSIEGLKQITKEVASKGHLPSVHGDHSSDMLGCGFFKLWVTGRFDDMGYPR 120 Query: 130 PEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIKF 189 P+FDADQGA AVK++GG+IEMHHGSHTEKVVYINL+ NKTLEP+ENDQRFIVDGWAA KF Sbjct: 121 PQFDADQGANAVKDAGGIIEMHHGSHTEKVVYINLLANKTLEPNENDQRFIVDGWAADKF 180 Query: 190 NLDVVKFLVAAAATVEMLGGPRIAKIVV 217 LDV KFL+AAAATVEMLGGP+ AKIVV Sbjct: 181 GLDVPKFLIAAAATVEMLGGPKNAKIVV 208 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 3BOHA 453 e-127 3BOJA 451 e-127 3BOBA 442 e-124 3UK8A 440 e-124 3UK8B 440 e-124 Sequences not found previously or not previously below threshold: 3O8OB 37 0.030 3O8OF 37 0.030 4C7UA 36 0.041 4C7UB 36 0.041 4C7UC 36 0.041 4C7UE 36 0.041 4C7UG 36 0.041 4C7UF 35 0.12 CONVERGED! >3BOHA Length = 213 Score = 453 bits (1165), Expect = e-127, Method: Composition-based stats. Identities = 168/209 (80%), Positives = 188/209 (89%) Query: 9 PLTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGG 68 LTP IVAALQ RGW+AEI++ S+ +MV+VDP GILKCVDGRGSDNT+ GPKMPGG Sbjct: 4 SLTPDQIVAALQERGWQAEIVTEFSLLNEMVDVDPQGILKCVDGRGSDNTQFCGPKMPGG 63 Query: 69 IYAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYP 128 IYAIAHNRG T+++GLK+ITKEVASKGHVPSVHGDHS+DMLGCGFF+LWVTG FD MGYP Sbjct: 64 IYAIAHNRGVTTLEGLKQITKEVASKGHVPSVHGDHSSDMLGCGFFKLWVTGRFDDMGYP 123 Query: 129 RPEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIK 188 RP+FDADQGA AV+ +GGVIEMHHGSH EKVVYINLVENKTLEPDE+DQRFIVDGWAA K Sbjct: 124 RPQFDADQGAKAVENAGGVIEMHHGSHAEKVVYINLVENKTLEPDEDDQRFIVDGWAAGK 183 Query: 189 FNLDVVKFLVAAAATVEMLGGPRIAKIVV 217 F LDV KFL+AAAATVEMLGGP+ AKIV+ Sbjct: 184 FGLDVPKFLIAAAATVEMLGGPKKAKIVI 212 >3BOJA Length = 209 Score = 451 bits (1161), Expect = e-127, Method: Composition-based stats. Identities = 168/208 (80%), Positives = 188/208 (90%) Query: 10 LTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGGI 69 LTP IVAALQ RGW+AEI++ S+ +MV+VDP GILKCVDGRGSDNT+ GPKMPGGI Sbjct: 1 LTPDQIVAALQERGWQAEIVTEFSLLNEMVDVDPQGILKCVDGRGSDNTQFCGPKMPGGI 60 Query: 70 YAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYPR 129 YAIAHNRG T+++GLK+ITKEVASKGHVPSVHGDHS+DMLGCGFF+LWVTG FD MGYPR Sbjct: 61 YAIAHNRGVTTLEGLKQITKEVASKGHVPSVHGDHSSDMLGCGFFKLWVTGRFDDMGYPR 120 Query: 130 PEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIKF 189 P+FDADQGA AV+ +GGVIEMHHGSH EKVVYINLVENKTLEPDE+DQRFIVDGWAA KF Sbjct: 121 PQFDADQGAKAVENAGGVIEMHHGSHAEKVVYINLVENKTLEPDEDDQRFIVDGWAAGKF 180 Query: 190 NLDVVKFLVAAAATVEMLGGPRIAKIVV 217 LDV KFL+AAAATVEMLGGP+ AKIV+ Sbjct: 181 GLDVPKFLIAAAATVEMLGGPKKAKIVI 208 >3BOBA Length = 209 Score = 442 bits (1137), Expect = e-124, Method: Composition-based stats. Identities = 164/208 (78%), Positives = 188/208 (90%) Query: 10 LTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGGI 69 ++P I ALQ RGW+AEI++ +S++ +V+V P GILKCVDGRGSDNTRM GPKMPGGI Sbjct: 1 ISPAQIAEALQGRGWDAEIVTDASMAGQLVDVRPEGILKCVDGRGSDNTRMGGPKMPGGI 60 Query: 70 YAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYPR 129 YAIAHNRG TS++GLK+ITKEVASKGH+PSVHGDHS+DMLGCGFF+LWVTG FD MGYPR Sbjct: 61 YAIAHNRGVTSIEGLKQITKEVASKGHLPSVHGDHSSDMLGCGFFKLWVTGRFDDMGYPR 120 Query: 130 PEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIKF 189 P+FDADQGA AVK++GG+IEMHHGSHTEKVVYINL+ NKTLEP+ENDQRFIVDGWAA KF Sbjct: 121 PQFDADQGANAVKDAGGIIEMHHGSHTEKVVYINLLANKTLEPNENDQRFIVDGWAADKF 180 Query: 190 NLDVVKFLVAAAATVEMLGGPRIAKIVV 217 LDV KFL+AAAATVEMLGGP+ AKIVV Sbjct: 181 GLDVPKFLIAAAATVEMLGGPKNAKIVV 208 >3UK8A Length = 214 Score = 440 bits (1133), Expect = e-124, Method: Composition-based stats. Identities = 161/209 (77%), Positives = 185/209 (88%) Query: 9 PLTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGG 68 +TP IV+AL+ RGW+A I+ AS++S ++ VDP GILKCVDGRGSDNT+ GPKMPGG Sbjct: 5 SITPPQIVSALRGRGWKASIVKASTMSSELKRVDPQGILKCVDGRGSDNTQFGGPKMPGG 64 Query: 69 IYAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYP 128 IYAIAHNRG T+++GLK+IT+EVASKGHVPSVHGDHS+DMLGCGFF+LW+TG FD MGYP Sbjct: 65 IYAIAHNRGVTTLEGLKDITREVASKGHVPSVHGDHSSDMLGCGFFKLWLTGRFDDMGYP 124 Query: 129 RPEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIK 188 RPEFDADQGA AV+ +GGVIEMHHGSH EKVVYINLV TLEP+E+DQRFIVDGWAA K Sbjct: 125 RPEFDADQGALAVRAAGGVIEMHHGSHEEKVVYINLVSGMTLEPNEHDQRFIVDGWAASK 184 Query: 189 FNLDVVKFLVAAAATVEMLGGPRIAKIVV 217 F LDVVKFLVAAAATVEMLGGP+ AKIV+ Sbjct: 185 FGLDVVKFLVAAAATVEMLGGPKKAKIVI 213 >3UK8B Length = 209 Score = 440 bits (1131), Expect = e-124, Method: Composition-based stats. Identities = 161/208 (77%), Positives = 185/208 (88%) Query: 10 LTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVDGRGSDNTRMAGPKMPGGI 69 +TP IV+AL+ RGW+A I+ AS++S ++ VDP GILKCVDGRGSDNT+ GPKMPGGI Sbjct: 1 ITPPQIVSALRGRGWKASIVKASTMSSELKRVDPQGILKCVDGRGSDNTQFGGPKMPGGI 60 Query: 70 YAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGEFDSMGYPR 129 YAIAHNRG T+++GLK+IT+EVASKGHVPSVHGDHS+DMLGCGFF+LW+TG FD MGYPR Sbjct: 61 YAIAHNRGVTTLEGLKDITREVASKGHVPSVHGDHSSDMLGCGFFKLWLTGRFDDMGYPR 120 Query: 130 PEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIKF 189 PEFDADQGA AV+ +GGVIEMHHGSH EKVVYINLV TLEP+E+DQRFIVDGWAA KF Sbjct: 121 PEFDADQGALAVRAAGGVIEMHHGSHEEKVVYINLVSGMTLEPNEHDQRFIVDGWAASKF 180 Query: 190 NLDVVKFLVAAAATVEMLGGPRIAKIVV 217 LDVVKFLVAAAATVEMLGGP+ AKIV+ Sbjct: 181 GLDVVKFLVAAAATVEMLGGPKKAKIVI 208 >3O8OB Length = 763 Score = 36.9 bits (84), Expect = 0.030, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 14 DIVAALQSRGWEAEII--SASSISQDMVEVDPAGILKCVDGRGSDNTRMA--GPKMPGGI 69 DIV+ +SRG I+ + +I+ D+ + P+ + K + R +TR+ G GG Sbjct: 234 DIVSKHRSRGKRTTIVVVAEGAIAADLTPISPSDVHKVLVDRLGLDTRITTLGHVQRGGT 293 Query: 70 YAIAHNRGTTSVDGLKEITKEVASKGHVPS 99 A+A++R ++ GL+ + + S PS Sbjct: 294 -AVAYDRILATLQGLEAVNAVLESTPDTPS 322 >3O8OF Length = 762 Score = 36.9 bits (84), Expect = 0.030, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 14 DIVAALQSRGWEAEII--SASSISQDMVEVDPAGILKCVDGRGSDNTRMA--GPKMPGGI 69 DIV+ +SRG I+ + +I+ D+ + P+ + K + R +TR+ G GG Sbjct: 233 DIVSKHRSRGKRTTIVVVAEGAIAADLTPISPSDVHKVLVDRLGLDTRITTLGHVQRGGT 292 Query: 70 YAIAHNRGTTSVDGLKEITKEVASKGHVPS 99 A+A++R ++ GL+ + + S PS Sbjct: 293 -AVAYDRILATLQGLEAVNAVLESTPDTPS 321 >4C7UA Length = 203 Score = 36.1 bits (82), Expect = 0.041, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 125 MGYPRPEFDADQGAAAVKESGGVIEMHHGSHTEKVV--YINLVENKTLEPDENDQRFIVD 182 M + P+ D GA SG ++++HH H + V Y N +E ++ D +V Sbjct: 1 MTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVK 60 Query: 183 GWAAIKFN 190 +AIKFN Sbjct: 61 LQSAIKFN 68 >4C7UB Length = 202 Score = 36.1 bits (82), Expect = 0.041, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 125 MGYPRPEFDADQGAAAVKESGGVIEMHHGSHTEKVV--YINLVENKTLEPDENDQRFIVD 182 M + P+ D GA SG ++++HH H + V Y N +E ++ D +V Sbjct: 2 MTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVK 61 Query: 183 GWAAIKFN 190 +AIKFN Sbjct: 62 LQSAIKFN 69 >4C7UC Length = 203 Score = 36.1 bits (82), Expect = 0.041, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 125 MGYPRPEFDADQGAAAVKESGGVIEMHHGSHTEKVV--YINLVENKTLEPDENDQRFIVD 182 M + P+ D GA SG ++++HH H + V Y N +E ++ D +V Sbjct: 2 MTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVK 61 Query: 183 GWAAIKFN 190 +AIKFN Sbjct: 62 LQSAIKFN 69 >4C7UE Length = 201 Score = 36.1 bits (82), Expect = 0.041, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 125 MGYPRPEFDADQGAAAVKESGGVIEMHHGSHTEKVV--YINLVENKTLEPDENDQRFIVD 182 M + P+ D GA SG ++++HH H + V Y N +E ++ D +V Sbjct: 1 MTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVK 60 Query: 183 GWAAIKFN 190 +AIKFN Sbjct: 61 LQSAIKFN 68 >4C7UG Length = 202 Score = 36.1 bits (82), Expect = 0.041, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 125 MGYPRPEFDADQGAAAVKESGGVIEMHHGSHTEKVV--YINLVENKTLEPDENDQRFIVD 182 M + P+ D GA SG ++++HH H + V Y N +E ++ D +V Sbjct: 1 MTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVK 60 Query: 183 GWAAIKFN 190 +AIKFN Sbjct: 61 LQSAIKFN 68 >4C7UF Length = 202 Score = 34.5 bits (78), Expect = 0.12, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 130 PEFDADQGAAAVKESGGVIEMHHGSHTEKVV--YINLVENKTLEPDENDQRFIVDGWAAI 187 P+ D GA SG ++++HH H + V Y N +E ++ D +V +AI Sbjct: 5 PDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVKLQSAI 64 Query: 188 KFN 190 KFN Sbjct: 65 KFN 67 Database: pdb_cm Posted date: Oct 3, 2018 2:50 PM Number of letters in database: 47,973,432 Number of sequences in database: 180,940 Lambda K H 0.303 0.144 0.455 Lambda K H 0.267 0.0458 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,153,050 Number of Sequences: 180940 Number of extensions: 2740249 Number of successful extensions: 6287 Number of sequences better than 1.0: 13 Number of HSP's better than 1.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 6277 Number of HSP's gapped (non-prelim): 22 length of query: 218 length of database: 47,973,432 effective HSP length: 103 effective length of query: 115 effective length of database: 29,336,612 effective search space: 3373710380 effective search space used: 3373710380 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.7 bits) S2: 71 (31.8 bits)