############################################################################################################
#this text file includes the options used in comparative modelling used by cm_main_comb.pl (originally)
##the same settings are re-used by hhsearch-based template based approach (10/17/2007)
############################################################################################################

###############################Software and Data Settings####################
#prosys script dir
prosys_dir = /home/chengji/software/prosys/

#blast tool dir
#blast_dir = /home/jianlinc/pspro/blast2.2.8/
blast_dir = /home/chengji/software/prosys/blast-2.2.17/bin

#modeller_program = /home/chengji/software/prosys/modeller7v7/
#modeller_program = /home/tools/modeller-9.12/bin/mod9.12
modeller_program = /home/tools/modeller-9.16/bin/mod9.16

#pdb_db_dir = /home/jianlinc/prosys/database/cm_lib/
pdb_db_dir = /home/chengji/software/prosys_database/cm_lib/
#pdb_db_dir = /var/preserve/eval/cm_lib/

###########new settings specifically for hhsearch profile-profile based approach
#raptorx dir
#raptorx_dir=/home/tools/RaptorX2
#raptorx_dir=/home/tools/RaptorX3/CNFsearch1.66
raptorx_dir=/home/casp13/tools/RaptorX4/CNFsearch1.66


#hhsearch pdb dir 
atom_dir=/home/chengji/software/prosys_database/atom/

#templates built before May 10, 2007 (CASP7 starts)
#hhsearchdb=/home/chengji/software/prosys_database/casp7_hhsearchdb

#meta dir for hhblits
#meta_dir=/home/chengji/casp8/meta/
meta_dir=/home/chengji/casp8/raptorx/

#meta common dir
meta_common_dir=/home/chengji/casp8/meta/
###############################################################################

#models to simulate. One model with lowest energy will be chosen.
#cm_model_num = 10 
cm_model_num = 10 

#number of models to predict
easy_model_num=10
#more prefix name
output_prefix_name=rapt

###############################End of sorting and stx information option#######