Running perl /home/casp13/Human_QA_package/scripts/run_CASP13_HumanQA_noQApro_Novel_proq3D_20180420.pl domain0 /home/casp11/multicom/ZCA_155705426023607/domain0.fasta /home/casp11/multicom/ZCA_155705426023607/domain0/meta /home/casp11/multicom/ZCA_155705426023607/qa/domain0 Name "main::score" used only once: possible typo at /home/casp13/Human_QA_package/scripts/run_CASP13_HumanQA_noQApro_Novel_proq3D_20180420.pl line 254. 225 models are selected for evaluation Loading native score None ##### (1) Run feature generation perl /home/casp13/Human_QA_package/scripts/P1_feature_generation_casp13_parallel_noQApro_NOVEL_PROD3D_V3.pl domain0 /home/casp11/multicom/ZCA_155705426023607/domain0.fasta /home/casp11/multicom/ZCA_155705426023607/qa/domain0/mod2 /home/casp11/multicom/ZCA_155705426023607/qa/domain0 Name "main::f_modeleva" used only once: possible typo at /home/casp13/Human_QA_package/scripts/P1_feature_generation_casp13_parallel_noQApro_NOVEL_PROD3D_V3.pl line 2343. Name "main::f_dope" used only once: possible typo at /home/casp13/Human_QA_package/scripts/P1_feature_generation_casp13_parallel_noQApro_NOVEL_PROD3D_V3.pl line 2344. Name "main::f_RW" used only once: possible typo at /home/casp13/Human_QA_package/scripts/P1_feature_generation_casp13_parallel_noQApro_NOVEL_PROD3D_V3.pl line 2342. Name "main::score_NOVEL" used only once: possible typo at /home/casp13/Human_QA_package/scripts/P1_feature_generation_casp13_parallel_noQApro_NOVEL_PROD3D_V3.pl line 162. Name "main::score_check2" used only once: possible typo at /home/casp13/Human_QA_package/scripts/P1_feature_generation_casp13_parallel_noQApro_NOVEL_PROD3D_V3.pl line 188. The process id of the thread 0 is 17727. start thread 0 The process id of the thread 1 is 17728. start thread 1 The process id of the thread 2 is 17729. 1. generating dfire score perl /home/casp13/Human_QA_package/HUMAN/scripts/dfire.pl /home/casp13/Human_QA_package/HUMAN/scripts/CASP11_cal_not_norm_dfire_score.pl /home/casp13/Human_QA_package/HUMAN/scripts/CASP11_norm_dfire_score.pl /home/casp13/Human_QA_package/HUMAN/tools/DFIRE2.1 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/domain0_2 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/domain0.fasta /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_dfire.domain0 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/LOG/dfire.is_running start thread 2 The process id of the thread 3 is 17730. start thread 3 2. generating OPUS score perl /home/casp13/Human_QA_package/HUMAN/scripts/OPUS_PSP.pl /home/casp13/Human_QA_package/HUMAN/scripts/CASP11_cal_not_norm_OPUS_score.pl /home/casp13/Human_QA_package/HUMAN/scripts/CASP11_norm_OPUS_score.pl /home/casp13/Human_QA_package/HUMAN/tools/OPUS/OPUS_PSP /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/domain0_2 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/domain0.fasta /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_OPUS.domain0 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/LOG/OPUS.is_running 3. generating local and global score perl /home/casp13/Human_QA_package/HUMAN/scripts/CASP11_generating_local_and_global_features.pl /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/mod_locglo /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/domain0.fasta /home/casp13/Human_QA_package/HUMAN/scripts/LCS /home/casp13/Human_QA_package/HUMAN/scripts/dsspcmbi /home/casp13/Human_QA_package/HUMAN/scripts/dssp2dataset.pl /home/casp13/Human_QA_package/HUMAN/tools/spine_X/spX.pl /home/casp13/Human_QA_package/HUMAN/tools/sspro4/bin/predict_acc.sh /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/local_global_features /home/casp11/multicom/ZCA_155705426023607/qa/domain0/LOG/local_global_feature_generation.is_running domain0 The process id of the thread 4 is 17732. start thread 4 4. generating RF_SRS score perl /home/casp13/Human_QA_package/HUMAN/scripts/RF_SRS.pl /home/casp13/Human_QA_package/HUMAN/scripts/CASP11_cal_not_norm_RF_SRS_score.pl /home/casp13/Human_QA_package/HUMAN/scripts/CASP11_norm_RF_SRS_score.pl /home/casp13/Human_QA_package/HUMAN/tools/Energy_function_RF_SRS/calc_energy /home/casp13/Human_QA_package/HUMAN/tools/Energy_function_RF_SRS/RF_CB_SRS_OD /home/casp11/multicom/ZCA_155705426023607/qa/domain0/mod2 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/domain0.fasta /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_RF_SRS.domain0 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/LOG/RF_CB_SRS_OD.is_running The process id of the thread 5 is 17735. start thread 5 5. generating RWplus score perl /home/casp13/Human_QA_package/HUMAN/scripts/RWplus.pl /home/casp13/Human_QA_package/HUMAN/scripts/CASP11_cal_not_norm_RWplus_score.pl /home/casp13/Human_QA_package/HUMAN/scripts/CASP11_norm_RWplus_score.pl /home/casp13/Human_QA_package/HUMAN/tools/RWplus /home/casp11/multicom/ZCA_155705426023607/qa/domain0/mod2 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/domain0.fasta /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_RWplus.domain0 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/LOG/RWplus.is_running The process id of the thread 6 is 17736. start thread 6 6. generating dope score perl /home/casp13/Human_QA_package/HUMAN/scripts/dope.pl /home/casp13/Human_QA_package/HUMAN/scripts/CASP11_cal_not_norm_dope_score.pl /home/casp13/Human_QA_package/HUMAN/scripts/CASP11_norm_dope_score.pl /home/casp11/multicom/ZCA_155705426023607/qa/domain0/mod2 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/domain0.fasta /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_dope.domain0 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/LOG/dope.is_running The process id of the thread 7 is 17739. start thread 7 7. generating modfoldclust2 score perl /home/casp13/Human_QA_package/HUMAN/scripts/cal_modfoldclust2.pl /home/casp13/Human_QA_package/HUMAN/tools/ModFOLDclust2.jar domain0 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/mod2 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/domain0.fasta /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/modfoldclust2.domain0 The process id of the thread 8 is 17741. start thread 8 8. generating pcons score perl /home/casp13/Human_QA_package/HUMAN/scripts/cal_pcons.pl /home/casp13/Human_QA_package/HUMAN/tools/Pcons/bin/pcons /home/casp11/multicom/ZCA_155705426023607/qa/domain0/mod2 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_pcons.domain0 The process id of the thread 9 is 17743. start thread 9 start thread 10 14. generating voronota score perl /home/casp13/Human_QA_package/HUMAN/tools/voronota_1_18_1877/run_voronota_batch.pl /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/domain0_2 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_voronota.domain0 The process id of the thread 11 is 17749. start thread 11 The process id of the thread 12 is 17752. start thread 12 The process id of the thread 13 is 17757. The main process starts to wait for the base predictors to finish... start thread 13 ####### 1. Predicting contact !!!!!!! Checking method status !!!!!! !!!!!! dfire: 1 OPUS:1 local_global:1 RF_SRS:1 RWplus:1 dope:1 modfoldclust2:1 pcons:1 pairwise:1 QApro:0 voronota:1 DeepQA:1 Proq3:1 Proq3D:0 model_eva:0 SBROD:1 dncon2:1 !!!!!! 19. generating dncon2 score /home/casp13/DNCON2/dncon2-v1.0.sh /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/domain0.fasta /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/dncon2 15. generating DeepQA score /home/casp13/Human_QA_package/HUMAN/tools/DeepQA/bin/DeepQA.sh /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/domain0.fasta /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/mod_DeepQA /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/DeepQA 16. generating Proq3 score perl /home/casp13/Human_QA_package/HUMAN/scripts/CASP13_run_proq3_for_rosetta_energy_parallel.pl /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/mod_proq3 /home/casp13/Human_QA_package/HUMAN/tools/proq3/run_proq3.sh /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/Proq3/domain0.fasta /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/Proq3 18. generating SBROD score ./assess_protein /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/domain0_2/* &> /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_SBROD.domain0 9. generating pairwise score /home/casp13/Human_QA_package/HUMAN/scripts/filter_model_same_group_v2.pl domain0.mlist domain0.nlist /home/casp13/Human_QA_package/HUMAN/tools/TMscore_32 !!Successfully generated /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_pcons.domain0 8. pcons modeling finished within 0.000277777777777778 hrs! !!Successfully generated /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_OPUS.domain0 2. OPUS modeling finished within 0.000833333333333333 hrs! !!Successfully generated /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_RF_SRS.domain0 4. RF_SRS modeling finished within 0.00111111111111111 hrs! !!Successfully generated /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_dfire.domain0 1. dfire modeling finished within 0.0258333333333333 hrs! 18. SBROD modeling finished within 0.0386111111111111 hrs! !!Successfully generated /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_RWplus.domain0 5. RWplus modeling finished within 0.0427777777777778 hrs! !!Successfully generated /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_dope.domain0 6. dope modeling finished within 0.0527777777777778 hrs! !!Successfully generated /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/local_global_features/Global_features/1_feature_ss_sim.domain0 3. local_global modeling finished within 0.0994444444444444 hrs! !!Successfully generated /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_voronota.domain0 14. voronota modeling finished within 0.156666666666667 hrs! !!!!!!! Checking method status !!!!!! !!!!!! dfire: 0 OPUS:0 local_global:0 RF_SRS:0 RWplus:0 dope:0 modfoldclust2:1 pcons:0 pairwise:1 QApro:0 voronota:0 DeepQA:1 Proq3:1 Proq3D:0 model_eva:0 SBROD:0 dncon2:1 !!!!!! !!Successfully generated /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/modfoldclust2.domain0 7. modfoldclust2 modeling finished within 0.171388888888889 hrs! !!Successfully generated /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/pairwise/domain0.gdt 9. pairwise modeling finished within 0.228888888888889 hrs! !!!!!!! Checking method status !!!!!! !!!!!! dfire: 0 OPUS:0 local_global:0 RF_SRS:0 RWplus:0 dope:0 modfoldclust2:0 pcons:0 pairwise:0 QApro:0 voronota:0 DeepQA:1 Proq3:1 Proq3D:0 model_eva:0 SBROD:0 dncon2:1 !!!!!! /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/dncon2/domain0.dncon2.rr generated! 19. generating contact energy score perl /home/casp13/Human_QA_package/HUMAN/scripts/CASP13_run_contact_energy.pl /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/dncon2/domain0.dncon2.rr /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/mod_dncon2 domain0 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/dncon2 !!Successfully generated /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_proq2.domain0 16. Proq3 modeling finished within 0.476944444444444 hrs! !!!!!!! Checking method status !!!!!! !!!!!! dfire: 0 OPUS:0 local_global:0 RF_SRS:0 RWplus:0 dope:0 modfoldclust2:0 pcons:0 pairwise:0 QApro:0 voronota:0 DeepQA:1 Proq3:0 Proq3D:0 model_eva:0 SBROD:0 dncon2:1 !!!!!! !!Successfully generated /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_dncon2_short-range.domain0, /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_dncon2_medium-range.domain0, /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_dncon2_short-range.domain0 19. dncon2 modeling finished within 0.555 hrs! !!!!!!! Checking method status !!!!!! !!!!!! dfire: 0 OPUS:0 local_global:0 RF_SRS:0 RWplus:0 dope:0 modfoldclust2:0 pcons:0 pairwise:0 QApro:0 voronota:0 DeepQA:1 Proq3:0 Proq3D:0 model_eva:0 SBROD:0 dncon2:0 !!!!!! !!!!!!! Checking method status !!!!!! !!!!!! dfire: 0 OPUS:0 local_global:0 RF_SRS:0 RWplus:0 dope:0 modfoldclust2:0 pcons:0 pairwise:0 QApro:0 voronota:0 DeepQA:1 Proq3:0 Proq3D:0 model_eva:0 SBROD:0 dncon2:0 !!!!!! !!!!!!! Checking method status !!!!!! !!!!!! dfire: 0 OPUS:0 local_global:0 RF_SRS:0 RWplus:0 dope:0 modfoldclust2:0 pcons:0 pairwise:0 QApro:0 voronota:0 DeepQA:1 Proq3:0 Proq3D:0 model_eva:0 SBROD:0 dncon2:0 !!!!!! !!!!!!! Checking method status !!!!!! !!!!!! dfire: 0 OPUS:0 local_global:0 RF_SRS:0 RWplus:0 dope:0 modfoldclust2:0 pcons:0 pairwise:0 QApro:0 voronota:0 DeepQA:1 Proq3:0 Proq3D:0 model_eva:0 SBROD:0 dncon2:0 !!!!!! !!!!!!! Checking method status !!!!!! !!!!!! dfire: 0 OPUS:0 local_global:0 RF_SRS:0 RWplus:0 dope:0 modfoldclust2:0 pcons:0 pairwise:0 QApro:0 voronota:0 DeepQA:1 Proq3:0 Proq3D:0 model_eva:0 SBROD:0 dncon2:0 !!!!!! !!!!!!! Checking method status !!!!!! !!!!!! dfire: 0 OPUS:0 local_global:0 RF_SRS:0 RWplus:0 dope:0 modfoldclust2:0 pcons:0 pairwise:0 QApro:0 voronota:0 DeepQA:1 Proq3:0 Proq3D:0 model_eva:0 SBROD:0 dncon2:0 !!!!!! !!!!!!! Checking method status !!!!!! !!!!!! dfire: 0 OPUS:0 local_global:0 RF_SRS:0 RWplus:0 dope:0 modfoldclust2:0 pcons:0 pairwise:0 QApro:0 voronota:0 DeepQA:1 Proq3:0 Proq3D:0 model_eva:0 SBROD:0 dncon2:0 !!!!!! !!Successfully generated /home/casp11/multicom/ZCA_155705426023607/qa/domain0/TMP/feature_DeepQA.domain0 15. DeepQA modeling finished within 1.80527777777778 hrs! !!!!!!! Checking method status !!!!!! !!!!!! dfire: 0 OPUS:0 local_global:0 RF_SRS:0 RWplus:0 dope:0 modfoldclust2:0 pcons:0 pairwise:0 QApro:0 voronota:0 DeepQA:0 Proq3:0 Proq3D:0 model_eva:0 SBROD:0 dncon2:0 !!!!!! !!!!Feature generationg finished! !!!!Feature generationg finished within 1.8425 hrs! !!!!!! Checking if all features are generated successfully !!!!!!!!!! All features are generated correctly ##### (2) Run feature organization perl /home/casp13/Human_QA_package/scripts/P2_combine_score_into_SVMformat_noQApro_NOVEL_PROD3D_V2.pl /home/casp11/multicom/ZCA_155705426023607/qa/domain0/mod2 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/ALL_scores/ domain0 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/feat.txt None Total features number: 23 Didn't find native score, initialize as 0.... domain0 is complete ##### (3) Run make prediction for gdt score perl /home/casp13/Human_QA_package/scripts/python_lib/P3_make_prediction_by_10folds.pl /home/casp11/multicom/ZCA_155705426023607/qa/domain0/feat.txt test /home/casp13/Human_QA_package/scripts/python_lib/model_gdt_feature27_humanqalite_10folds_noQApro_NOVEL_PROD3D/ /home/casp11/multicom/ZCA_155705426023607/qa/domain0/10_fold_prediction/ Processing /home/casp13/Human_QA_package/scripts/python_lib/model_gdt_feature27_humanqalite_10folds_noQApro_NOVEL_PROD3D//fold1 Using Theano backend. /home/casp13/python_virtualenv/lib/python2.7/site-packages/h5py/__init__.py:36: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`. from ._conv import register_converters as _register_converters Processing /home/casp13/Human_QA_package/scripts/python_lib/model_gdt_feature27_humanqalite_10folds_noQApro_NOVEL_PROD3D//fold2 Using Theano backend. /home/casp13/python_virtualenv/lib/python2.7/site-packages/h5py/__init__.py:36: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`. from ._conv import register_converters as _register_converters Processing /home/casp13/Human_QA_package/scripts/python_lib/model_gdt_feature27_humanqalite_10folds_noQApro_NOVEL_PROD3D//fold3 Using Theano backend. /home/casp13/python_virtualenv/lib/python2.7/site-packages/h5py/__init__.py:36: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`. from ._conv import register_converters as _register_converters Processing /home/casp13/Human_QA_package/scripts/python_lib/model_gdt_feature27_humanqalite_10folds_noQApro_NOVEL_PROD3D//fold4 Using Theano backend. /home/casp13/python_virtualenv/lib/python2.7/site-packages/h5py/__init__.py:36: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`. from ._conv import register_converters as _register_converters Processing /home/casp13/Human_QA_package/scripts/python_lib/model_gdt_feature27_humanqalite_10folds_noQApro_NOVEL_PROD3D//fold5 Using Theano backend. /home/casp13/python_virtualenv/lib/python2.7/site-packages/h5py/__init__.py:36: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`. from ._conv import register_converters as _register_converters Processing /home/casp13/Human_QA_package/scripts/python_lib/model_gdt_feature27_humanqalite_10folds_noQApro_NOVEL_PROD3D//fold6 Using Theano backend. /home/casp13/python_virtualenv/lib/python2.7/site-packages/h5py/__init__.py:36: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`. from ._conv import register_converters as _register_converters Processing /home/casp13/Human_QA_package/scripts/python_lib/model_gdt_feature27_humanqalite_10folds_noQApro_NOVEL_PROD3D//fold7 Using Theano backend. /home/casp13/python_virtualenv/lib/python2.7/site-packages/h5py/__init__.py:36: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`. from ._conv import register_converters as _register_converters Processing /home/casp13/Human_QA_package/scripts/python_lib/model_gdt_feature27_humanqalite_10folds_noQApro_NOVEL_PROD3D//fold8 Using Theano backend. /home/casp13/python_virtualenv/lib/python2.7/site-packages/h5py/__init__.py:36: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`. from ._conv import register_converters as _register_converters Processing /home/casp13/Human_QA_package/scripts/python_lib/model_gdt_feature27_humanqalite_10folds_noQApro_NOVEL_PROD3D//fold9 Using Theano backend. /home/casp13/python_virtualenv/lib/python2.7/site-packages/h5py/__init__.py:36: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`. from ._conv import register_converters as _register_converters Processing /home/casp13/Human_QA_package/scripts/python_lib/model_gdt_feature27_humanqalite_10folds_noQApro_NOVEL_PROD3D//fold10 Using Theano backend. /home/casp13/python_virtualenv/lib/python2.7/site-packages/h5py/__init__.py:36: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`. from ._conv import register_converters as _register_converters perl /home/casp13/Human_QA_package/scripts/python_lib/P1_add_prediction2feature_feature23_10folds.pl /home/casp11/multicom/ZCA_155705426023607/qa/domain0/feat.txt test /home/casp11/multicom/ZCA_155705426023607/qa/domain0/10_fold_prediction/ /home/casp11/multicom/ZCA_155705426023607/qa/domain0/feat_with10folds.txt ## read val prediction Adding fold1 prediction for test data Adding fold2 prediction for test data Adding fold3 prediction for test data Adding fold4 prediction for test data Adding fold5 prediction for test data Adding fold6 prediction for test data Adding fold7 prediction for test data Adding fold8 prediction for test data Adding fold9 prediction for test data Adding fold10 prediction for test data THEANO_FLAGS=floatX=float32,device=cpu python /home/casp13/Human_QA_package/scripts/python_lib/predict_main_iterative_20170902_auto_NN.py nadam /home/casp11/multicom/ZCA_155705426023607/qa/domain0/feat_with10folds.txt /home/casp13/Human_QA_package/scripts/python_lib/model_gdt_feature27_humanqalite_10folds_noQApro_NOVEL_PROD3D/10fold_2nd_stage_optnadam_htsigmoid_hn5 /home/casp11/multicom/ZCA_155705426023607/qa/domain0/feat_gdt_predict.txt Using Theano backend. /home/casp13/python_virtualenv/lib/python2.7/site-packages/h5py/__init__.py:36: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`. from ._conv import register_converters as _register_converters ######## Loading existing model /home/casp13/Human_QA_package/scripts/python_lib/model_gdt_feature27_humanqalite_10folds_noQApro_NOVEL_PROD3D/10fold_2nd_stage_optnadam_htsigmoid_hn5/model-train-QA_model.json ######## Loaded model from disk ######## Loading existing weights /home/casp13/Human_QA_package/scripts/python_lib/model_gdt_feature27_humanqalite_10folds_noQApro_NOVEL_PROD3D/10fold_2nd_stage_optnadam_htsigmoid_hn5/model-train-weight-QA_model.h5 ###### Predicting Testing data perl /home/casp13/Human_QA_package/scripts/P3_add_prediction2feature_feature34.pl /home/casp11/multicom/ZCA_155705426023607/qa/domain0/feat.txt /home/casp11/multicom/ZCA_155705426023607/qa/domain0/feat_gdt_predict.txt /home/casp11/multicom/ZCA_155705426023607/qa/domain0/feat_gdt_predict_withall.txt ## read test prediction perl /home/casp13/Human_QA_package/scripts/P3_get_model2prediction.pl /home/casp11/multicom/ZCA_155705426023607/qa/domain0/feat.txt /home/casp11/multicom/ZCA_155705426023607/qa/domain0/feat_gdt_predict.txt /home/casp11/multicom/ZCA_155705426023607/qa/domain0/HumanQA_gdt_prediction.txt ## read test prediction ####### HumanQA prediction done within 1.85027777777778 hr!!!!!