Protein sequence

>A0A0H3C5R2: 1-179

1-60:

M

R

P

L

P

T

P

E

A

I

A

I

L

R

S

K

R

T

K

P

Q

R

P

A

G

K

N

L

A

P

L

K

D

L

E

D

R

F

G

K

G

P

A

L

Q

A

R

W

K

E

I

V

61-119:

G

D

T

L

A

R

T

E

P

V

R

I

K

G

R

N

G

E

G

A

L

E

L

R

V

D

G

P

V

A

S

L

I

Q

H

Q

A

P

Q

I

T

A

R

L

D

M

L

G

K

G

V

T

R

L

R

121-179:

I

V

Q

G

P

V

K

A

P

A

P

S

T

R

L

R

K

P

L

D

A

L

E

K

Q

L

A

D

S

L

A

E

Q

P

D

G

A

L

K

Q

A

L

K

L

G

R

G

V

L

S

E

R

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

H

C

H

C

H

61-119:

C

H

C

E

C

E

C

H

C

H

E

121-179:

E

C

H

C

H

C

H(Helix): 100(55.87%)

E(Strand): 13(7.26%)

C(Coil): 66(36.87%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

61-119:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

121-179:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

e(Exposed): 105(58.66%)

b(Buried): 74(41.34%)

Disorder prediction (N: Normal T: Disorder)

1-60:

T

N

61-119:

N

121-179:

N

T

N

T

N(Normal): 132(73.74%)

T(Disorder): 47(26.26%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.89	88.94
TopL/2	0.63	66.48

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

loadClass core.package

loadClass java.lang.String

loadClass core.package

JSmol exec jsmolApplet_M23d1 start applet null

Jmol JavaScript applet jsmolApplet_M23d1__739238816969229__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d1__739238816969229__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d1","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=A0A0H3C5R2","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d1__739238816969229__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d1_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"739238816969229","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=A0A0H3C5R2"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d1 (signed)

loadClass JS.ScriptManager

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d1__739238816969229__ ready

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-A0A0H3C5R2/full_length/A0A0H3C5R2.casp1.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-A0A0H3C5R2/full_length/A0A0H3C5R2.casp1.pdb

The Resolver thinks Pdb

loadClass J.adapter.readers.pdb.PdbReader

Time for openFile(work/multicom-A0A0H3C5R2/full_length/A0A0H3C5R2.casp1.pdb): 450 ms

reading 1711 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Babel

1711 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

null

loadClass J.thread.SpinThread

Script completed

Jmol script terminated

loadClass J.g3d.HermiteRenderer

Model 1 vs Contact (Top L/5)

./work/multicom-A0A0H3C5R2/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-A0A0H3C5R2/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-A0A0H3C5R2/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-A0A0H3C5R2/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	80.56
TopL/2	44.44
TopL	25.14
Top2L	14.53

( Alignment file )

Alignment	Number
N	8795
Neff	1666

Model comparsion

Model	TM-score
Model 2	0.4109
Model 3	0.3752
Model 4	0.3863
Model 5	0.3649
Average	0.38433

Radius Gyration

RG	RG/(2.0*L^0.4)
30.08	1.89269

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
2ztg	0.46570
5amr	0.46510
2qiz	0.46113
6bye	0.45909
1ulv	0.45796

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 2 Tertiary structure

Predicted Model 2

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d2"[x]

Model 2 vs Contact (Top L/5)

./work/multicom-A0A0H3C5R2/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-A0A0H3C5R2/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-A0A0H3C5R2/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-A0A0H3C5R2/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	80.56
TopL/2	47.78
TopL	27.37
Top2L	15.36

( Alignment file )

Alignment	Number
N	8795
Neff	1666

Model comparsion

Model	TM-score
Model 1	0.4109
Model 3	0.3735
Model 4	0.3903
Model 5	0.3845
Average	0.38980

Radius Gyration

RG	RG/(2.0*L^0.4)
24.00	1.51013

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
6bv4	0.49832
6vz9	0.48926
6ufp	0.48730
4e36	0.48293
5lg6	0.48276

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 3 Tertiary structure

Predicted Model 3

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d3"[x]

spinFPS is set too fast (30) -- can't keep up!

Model 3 vs Contact (Top L/5)

./work/multicom-A0A0H3C5R2/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-A0A0H3C5R2/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-A0A0H3C5R2/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-A0A0H3C5R2/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	75.00
TopL/2	43.33
TopL	27.37
Top2L	19.83

( Alignment file )

Alignment	Number
N	8795
Neff	1666

Model comparsion

Model	TM-score
Model 1	0.3752
Model 2	0.3735
Model 4	0.3820
Model 5	0.3959
Average	0.38165

Radius Gyration

RG	RG/(2.0*L^0.4)
19.01	1.19615

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
2z1q	0.48289
4ff1	0.47843
4ff4	0.47824
3q24	0.47769
4ff2	0.47739

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 4 Tertiary structure

Predicted Model 4

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d4"[x]

Model 4 vs Contact (Top L/5)

./work/multicom-A0A0H3C5R2/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-A0A0H3C5R2/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-A0A0H3C5R2/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-A0A0H3C5R2/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	80.56
TopL/2	46.67
TopL	26.26
Top2L	15.36

( Alignment file )

Alignment	Number
N	8795
Neff	1666

Model comparsion

Model	TM-score
Model 1	0.3863
Model 2	0.3903
Model 3	0.3820
Model 5	0.3930
Average	0.38790

Radius Gyration

RG	RG/(2.0*L^0.4)
23.18	1.45853

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
2xiq	0.49302
6s6y	0.48765
5t5m	0.48742
6oxd	0.48559
6req	0.48334

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 5 Tertiary structure

Predicted Model 5

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d5"[x]

Model 5 vs Contact (Top L/5)

./work/multicom-A0A0H3C5R2/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-A0A0H3C5R2/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-A0A0H3C5R2/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-A0A0H3C5R2/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	80.56
TopL/2	48.89
TopL	27.37
Top2L	18.72

( Alignment file )

Alignment	Number
N	8795
Neff	1666

Model comparsion

Model	TM-score
Model 1	0.3649
Model 2	0.3845
Model 3	0.3959
Model 4	0.3930
Average	0.38458

Radius Gyration

RG	RG/(2.0*L^0.4)
19.46	1.22446

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
4ub9	0.45479
4wgx	0.45089
6vkz	0.44687
6vl1	0.44571
5cnv	0.44532

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )