A0A0H3C6G4
multicom
A0A0H3C6G4
full_length
A0A0H3C6G4
Results of Structure Prediction for Target Name: A0A0H3C6G4 ( Click 
)
Domain Boundary prediction ( View )
>A0A0H3C6G4: 1-189
| 1-60: |
M | S | F | N | R | V | A | A | I | S | A | L | T | A | V | A | A | I | G | L | A | G | C | T | S | T | K | K | A | L | G | M | D | K | V | V | P | D | E | F | R | V | V | S | K | A | P | L | V | V | P | P | D | Y | A | L | R | P | P | A |
| 61-119: |
P | G | E | P | R | P | Q | E | L | Q | P | E | S | A | A | R | A | A | L | I | G | Q | N | A | A | S | G | R | S | E | G | E | R | L | L | V | A | R | A | G | S | D | K | A | D | P | L | I | R | F | V | V | D | D | E | N | G | D | L | A |
| 121-179: |
H | K | D | E | S | F | A | S | K | V | M | F | W | K | K | G | E | A | K | T | N | V | A | A | A | A | E | A | G | A | N | A | P | L | E | I | D | A | A | A | E | E | A | R | L | K | T | L | V | G | K | G | G | V | V | I | S | R | D | K |
| 181-189: |
K | T | G | I | K | L | P | G | L |
| 1-60: |
C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | H | H | C | C | C | C | C | C | C | C | C | C | C | E | E | E | E | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C |
| 61-119: |
C | C | C | C | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | H | H | E | E | E | C | C | C | C | C | H | H | E |
| 121-179: |
C | C | C | C | C | C | H | H | E | E | E | E | E | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | E | E | E | E | C | C | C |
| 181-189: |
C | C | C | C | C | C | C | C | C |
| |
| | H(Helix): 55(29.1%) | E(Strand): 17(8.99%) | C(Coil): 117(61.9%) |
| 1-60: |
E | E | B | E | E | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | E | E | E | E | E | E | B | E | B | E | E | E | E | E | E | B | B | E | B | B | E | E | E | E | B | E | B | B | E | E | B | E | B | E | B | E | E |
| 61-119: |
E | E | E | E | E | E | E | E | E | E | E | E | E | E | B | B | E | B | B | B | E | E | E | B | E | E | E | E | E | E | B | B | E | B | B | B | E | E | B | E | E | E | E | B | E | E | E | B | B | E | E | B | E | E | E | B | E | E | B | E |
| 121-179: |
E | E | E | E | B | B | B | B | B | B | B | B | B | B | E | E | E | E | E | E | E | B | E | E | E | E | E | E | E | E | E | E | E | E | E | B | E | E | E | E | B | B | E | E | B | E | E | B | E | E | E | E | E | B | B | B | E | E | E | E |
| 181-189: |
E | B | E | B | E | B | E | E | E |
| |
| | e(Exposed): 118(62.43%) | b(Buried): 71(37.57%) |
| 1-60: |
T | N | N | T | T | N | T | T | T | T | T | T | T | T | T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T |
| 61-119: |
T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 121-179: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T | T | T | T | T | T | T | T | T | T | T | T | T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 181-189: |
N | N | N | N | T | N | T | T | T |
| |
| | N(Normal): 131(69.31%) | T(Disorder): 58(30.69%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.13 |
15.95 |
| TopL/2 |
0.10 |
12.78 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
36.84 |
| TopL/2 |
26.32 |
| TopL |
16.40 |
| Top2L |
11.38 |
| Alignment |
Number |
| N |
2791 |
| Neff |
511 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.5014 |
| Model 3 |
0.5280 |
| Model 4 |
0.7595 |
| Model 5 |
0.3446 |
| Average |
0.53337 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6hfb |
0.48866 |
| 3w4t |
0.48496 |
| 4z3n |
0.48272 |
| 4z3p |
0.47990 |
| 3lkb |
0.47688 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
36.84 |
| TopL/2 |
27.37 |
| TopL |
17.99 |
| Top2L |
11.38 |
| Alignment |
Number |
| N |
2791 |
| Neff |
511 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.5014 |
| Model 3 |
0.8013 |
| Model 4 |
0.5396 |
| Model 5 |
0.4486 |
| Average |
0.57272 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6irz |
0.46809 |
| 6irx |
0.46510 |
| 1mro |
0.45958 |
| 1hbn |
0.45922 |
| 1hbu |
0.45906 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
39.47 |
| TopL/2 |
26.32 |
| TopL |
16.93 |
| Top2L |
11.90 |
| Alignment |
Number |
| N |
2791 |
| Neff |
511 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.5280 |
| Model 2 |
0.8013 |
| Model 4 |
0.5616 |
| Model 5 |
0.4448 |
| Average |
0.58392 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1d7r |
0.46220 |
| 5m4d |
0.46067 |
| 6fyq |
0.46057 |
| 3dxv |
0.45985 |
| 2zuk |
0.45942 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
39.47 |
| TopL/2 |
24.21 |
| TopL |
16.40 |
| Top2L |
11.38 |
| Alignment |
Number |
| N |
2791 |
| Neff |
511 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.7595 |
| Model 2 |
0.5396 |
| Model 3 |
0.5616 |
| Model 5 |
0.3190 |
| Average |
0.54492 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6k7k |
0.48468 |
| 6hrb |
0.47358 |
| 5mrw |
0.46879 |
| 6eje |
0.46850 |
| 5zmv |
0.46391 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
44.74 |
| TopL/2 |
31.58 |
| TopL |
21.16 |
| Top2L |
12.70 |
| Alignment |
Number |
| N |
2791 |
| Neff |
511 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.3446 |
| Model 2 |
0.4486 |
| Model 3 |
0.4448 |
| Model 4 |
0.3190 |
| Average |
0.38925 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6ulw |
0.47284 |
| 6uz3 |
0.47083 |
| 6uz0 |
0.46998 |
| 6ouv |
0.45923 |
| 6qti |
0.45501 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
