A0A0H3CCP8
multicom
A0A0H3CCP8
full_length
A0A0H3CCP8
Results of Structure Prediction for Target Name: A0A0H3CCP8 ( Click 
)
Domain Boundary prediction ( View )
>A0A0H3CCP8: 1-188
| 1-60: |
M | P | P | L | T | Q | D | P | Q | S | V | D | A | R | A | V | A | N | L | L | L | D | K | A | A | A | L | D | I | P | I | S | N | L | A | L | Q | K | L | L | Y | F | A | H | G | R | F | L | V | D | K | G | R | P | L | V | N | G | F | F |
| 61-119: |
E | A | W | K | F | G | P | V | H | P | V | V | Y | R | C | F | S | A | N | G | P | K | Y | I | I | N | R | A | I | K | K | D | I | L | S | G | L | H | I | I | V | S | P | P | R | D | Q | D | I | H | E | G | I | E | R | V | L | L | T | M |
| 121-179: |
G | R | M | S | A | S | Q | L | V | A | V | S | H | A | S | G | G | P | W | D | V | I | A | N | G | P | G | T | N | L | G | L | G | L | R | I | C | D | K | V | I | K | D | R | F | R | F | Q | K | V | S | V | S | V | P | P | G | L | G | D |
| 181-188: |
T | L | E | E | A | P | P | S |
| 1-60: |
C | C | C | C | C | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | H | H |
| 61-119: |
H | H | H | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H |
| 121-179: |
C | C | C | C | H | H | H | H | H | H | H | C | C | C | C | C | C | C | H | H | H | H | H | C | C | C | C | C | C | C | C | C | C | C | E | C | C | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | C | C |
| 181-188: |
C | C | C | C | C | C | C | C |
| |
| | H(Helix): 85(45.21%) | E(Strand): 1(0.53%) | C(Coil): 102(54.26%) |
| 1-60: |
E | E | E | B | E | E | E | E | E | E | B | E | B | B | E | B | B | E | B | B | B | E | B | B | E | E | E | E | E | E | B | E | E | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | E | E | E | E | E | B | B | E | E | E | B |
| 61-119: |
E | B | B | E | B | B | B | B | B | E | E | B | B | E | E | B | E | E | B | E | E | E | E | B | E | E | E | B | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | E | B | E | E | B | B | E | E | B | B | E | E | B |
| 121-179: |
E | E | B | E | B | E | E | B | B | E | B | B | B | E | E | E | B | B | B | E | E | B | B | E | E | E | E | E | E | E | E | E | E | E | E | B | E | E | E | B | B | E | E | B | B | E | E | E | E | E | E | B | E | B | E | E | E | E | E | E |
| 181-188: |
E | B | E | E | E | E | E | E |
| |
| | e(Exposed): 118(62.77%) | b(Buried): 70(37.23%) |
| 1-60: |
T | T | T | T | T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-119: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 121-179: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T | N | T | T | T | T | T | T | T | T |
| 181-188: |
T | T | T | T | T | T | T | T |
| |
| | N(Normal): 166(88.3%) | T(Disorder): 22(11.7%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.93 |
92.79 |
| TopL/2 |
0.83 |
86.73 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
96.81 |
| TopL |
76.06 |
| Top2L |
44.95 |
| Alignment |
Number |
| N |
5623 |
| Neff |
2082 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.9017 |
| Model 3 |
0.9466 |
| Model 4 |
0.9191 |
| Model 5 |
0.8980 |
| Average |
0.91635 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6ql5 |
0.46728 |
| 3hmj |
0.46724 |
| 2uv8 |
0.46723 |
| 2vkz |
0.46492 |
| 6ta1 |
0.46234 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
95.74 |
| TopL |
74.47 |
| Top2L |
43.09 |
| Alignment |
Number |
| N |
5623 |
| Neff |
2082 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9017 |
| Model 3 |
0.8995 |
| Model 4 |
0.9094 |
| Model 5 |
0.9462 |
| Average |
0.91420 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5zli |
0.49225 |
| 5zlp |
0.48780 |
| 3zxr |
0.48635 |
| 4acf |
0.48629 |
| 3zxv |
0.48615 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
95.74 |
| TopL |
75.53 |
| Top2L |
44.95 |
| Alignment |
Number |
| N |
5623 |
| Neff |
2082 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9466 |
| Model 2 |
0.8995 |
| Model 4 |
0.9382 |
| Model 5 |
0.8880 |
| Average |
0.91807 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6u5u |
0.48143 |
| 6u5t |
0.48043 |
| 3hmj |
0.47797 |
| 2vkz |
0.47797 |
| 2uv8 |
0.47795 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
96.81 |
| TopL |
75.00 |
| Top2L |
42.55 |
| Alignment |
Number |
| N |
5623 |
| Neff |
2082 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9191 |
| Model 2 |
0.9094 |
| Model 3 |
0.9382 |
| Model 5 |
0.8904 |
| Average |
0.91428 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6u5t |
0.47510 |
| 2uv8 |
0.47247 |
| 2vkz |
0.47247 |
| 3hmj |
0.47215 |
| 6ql6 |
0.47065 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
94.68 |
| TopL |
72.87 |
| Top2L |
43.09 |
| Alignment |
Number |
| N |
5623 |
| Neff |
2082 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.8980 |
| Model 2 |
0.9462 |
| Model 3 |
0.8880 |
| Model 4 |
0.8904 |
| Average |
0.90565 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5zli |
0.49736 |
| 3zxr |
0.49507 |
| 4acf |
0.49496 |
| 3zxv |
0.49491 |
| 2whi |
0.49385 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
