A0A0H3CET9
multicom
A0A0H3CET9
full_length
A0A0H3CET9
Results of Structure Prediction for Target Name: A0A0H3CET9 ( Click 
)
Domain Boundary prediction ( View )
>A0A0H3CET9: 1-237
| 1-60: |
M | S | D | I | L | M | P | K | A | T | A | V | W | L | V | D | N | T | S | L | S | F | E | Q | I | A | D | F | C | G | L | H | P | L | E | V | R | G | I | A | D | G | E | V | A | R | D | I | R | G | A | D | P | I | G | N | G | Q | L | N |
| 61-119: |
R | E | E | L | D | R | A | Q | A | N | P | D | Y | R | M | K | A | L | V | S | R | H | A | E | L | L | K | P | A | K | K | A | P | R | Y | T | P | V | S | R | R | Q | D | R | P | D | A | I | A | W | F | L | R | H | H | P | E | V | T | D |
| 121-179: |
A | Q | I | S | K | I | L | G | T | T | K | A | T | I | E | Q | V | R | A | R | T | H | W | N | A | A | N | I | K | P | V | D | P | V | T | L | G | L | V | G | Q | L | E | L | D | A | L | V | K | K | A | A | E | K | K | A | K | D | D | L |
| 181-237: |
K | K | G | I | V | P | E | D | P | T | L | R | P | A | S | E | A | G | Q | F | E | P | E | V | E | E | E | E | E | D | F | R | A | P | R | G | D | L | K | A | E | D | V | F | G | K | S | T | G | Y | V | D | E | E | D | E | D |
| 1-60: |
C | C | C | C | C | C | C | C | C | E | E | E | E | E | E | C | C | C | H | H | H | H | H | H | H | H | H | H | H | C | C | C | H | H | E | E | H | H | H | C | C | C | C | H | C | C | C | E | E | C | C | C | C | C | C | C | C | C | C | C |
| 61-119: |
H | H | H | H | H | H | H | C | C | C | C | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | E | C | C | H | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | C | C | C | C | C | C | H |
| 121-179: |
H | H | H | H | H | H | H | C | C | C | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | E | E | E | E | E | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | H | H | H | H | H |
| 181-237: |
H | C | C | C | C | C | C | C | C | C | C | C | C | C | C | H | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | H | H | H | H | H | H | C | C | C | C | C | E | C | C | C | C | C | C |
| |
| | H(Helix): 84(35.44%) | E(Strand): 17(7.17%) | C(Coil): 136(57.38%) |
| 1-60: |
E | E | E | E | B | B | E | E | B | B | B | B | B | B | B | E | E | B | E | B | B | B | E | B | B | B | E | B | B | E | B | B | E | B | B | B | E | B | B | B | E | E | E | B | B | E | E | B | E | E | B | B | B | B | B | E | E | E | B | E |
| 61-119: |
E | E | B | B | E | E | B | E | E | E | E | E | E | E | B | E | E | B | E | E | E | E | E | E | E | E | E | E | E | E | E | B | E | E | B | B | E | B | B | E | E | E | E | E | E | E | B | B | B | B | B | B | E | E | B | E | E | B | E | E |
| 121-179: |
E | B | B | B | E | B | B | E | B | B | E | E | B | B | E | E | B | E | E | E | E | E | B | E | B | E | E | B | E | E | E | E | B | B | B | B | B | B | B | B | B | E | E | B | E | E | B | B | E | E | B | B | E | E | E | E | E | E | E | E |
| 181-237: |
E | E | E | B | E | E | E | E | E | E | B | B | E | B | E | E | E | E | E | B | E | E | E | E | E | E | E | E | E | E | E | E | B | E | E | E | E | B | E | B | E | E | B | B | B | E | E | B | E | B | E | E | E | E | E | E | E |
| |
| | e(Exposed): 144(60.76%) | b(Buried): 93(39.24%) |
| 1-60: |
T | T | T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-119: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 121-179: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T | T | T | T | T | T |
| 181-237: |
T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | N | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T |
| |
| | N(Normal): 172(72.57%) | T(Disorder): 65(27.43%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.54 |
55.41 |
| TopL/2 |
0.39 |
42.02 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
34.04 |
| TopL/2 |
26.05 |
| TopL |
18.99 |
| Top2L |
14.56 |
| Alignment |
Number |
| N |
368 |
| Neff |
101 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.4284 |
| Model 3 |
0.4295 |
| Model 4 |
0.4544 |
| Model 5 |
0.4238 |
| Average |
0.43402 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6s8q |
0.46235 |
| 3vkh |
0.45084 |
| 3vkg |
0.44959 |
| 5na8 |
0.44710 |
| 5t98 |
0.44661 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
40.43 |
| TopL/2 |
32.77 |
| TopL |
25.74 |
| Top2L |
18.78 |
| Alignment |
Number |
| N |
368 |
| Neff |
101 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.4284 |
| Model 3 |
0.4103 |
| Model 4 |
0.4115 |
| Model 5 |
0.4501 |
| Average |
0.42507 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 3w5n |
0.47081 |
| 2okx |
0.46356 |
| 6gsz |
0.46004 |
| 5f7u |
0.44701 |
| 5ey9 |
0.44279 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
38.30 |
| TopL/2 |
28.57 |
| TopL |
21.10 |
| Top2L |
19.20 |
| Alignment |
Number |
| N |
368 |
| Neff |
101 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.4295 |
| Model 2 |
0.4103 |
| Model 4 |
0.4059 |
| Model 5 |
0.4241 |
| Average |
0.41745 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6q4r |
0.45005 |
| 2yd0 |
0.44846 |
| 4kx9 |
0.44513 |
| 6m8p |
0.44488 |
| 3an1 |
0.44358 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
34.04 |
| TopL/2 |
21.01 |
| TopL |
16.46 |
| Top2L |
12.45 |
| Alignment |
Number |
| N |
368 |
| Neff |
101 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.4544 |
| Model 2 |
0.4115 |
| Model 3 |
0.4059 |
| Model 5 |
0.4073 |
| Average |
0.41978 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6eoj |
0.46009 |
| 1ar1 |
0.44492 |
| 3fye |
0.44482 |
| 3ehb |
0.44471 |
| 3omn |
0.44390 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
27.66 |
| TopL/2 |
31.09 |
| TopL |
23.63 |
| Top2L |
20.25 |
| Alignment |
Number |
| N |
368 |
| Neff |
101 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.4238 |
| Model 2 |
0.4501 |
| Model 3 |
0.4241 |
| Model 4 |
0.4073 |
| Average |
0.42633 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 4a0h |
0.45620 |
| 1n38 |
0.45446 |
| 4a0g |
0.45441 |
| 5g0j |
0.45047 |
| 1n1h |
0.44976 |
|
Note: This is multi-domain structure, check alignments and domain qualities in individual domains!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
