A0A0H3JKI6
multicom
A0A0H3JKI6
full_length
A0A0H3JKI6
Results of Structure Prediction for Target Name: A0A0H3JKI6 ( Click 
)
Domain Boundary prediction ( View )
>A0A0H3JKI6: 1-118
| 1-60: |
M | T | V | D | I | G | R | I | Y | D | N | K | D | N | T | D | A | I | R | I | L | V | D | R | V | W | P | R | G | I | S | K | R | T | A | N | L | D | Y | W | L | K | D | I | A | P | S | T | E | L | R | Q | W | F | Q | H | D | P | K | L |
| 61-118: |
F | G | A | F | K | E | K | Y | E | K | E | L | R | D | Q | D | A | Q | K | D | A | F | E | K | L | K | D | I | V | N | Q | H | N | H | V | L | L | L | Y | A | A | K | D | T | K | H | N | Q | A | V | V | L | Q | Q | L | L | N | T |
| 1-60: |
C | C | E | E | E | E | E | E | E | C | C | C | C | C | C | C | C | E | E | E | E | E | E | C | C | C | C | C | C | C | C | H | H | H | C | C | H | H | H | H | H | H | H | H | C | C | C | H | H | H | H | H | H | H | C | C | C | H | H | H |
| 61-118: |
H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | E | E | E | E | E | E | C | C | C | H | H | H | C | C | H | H | H | H | H | H | H | H | C | C |
| |
| | H(Helix): 60(50.85%) | E(Strand): 19(16.1%) | C(Coil): 39(33.05%) |
| 1-60: |
E | E | B | E | B | E | E | B | B | E | E | E | E | E | E | E | B | B | B | B | B | B | B | B | B | B | B | E | E | B | E | E | E | E | B | E | B | E | E | B | B | E | E | B | B | E | E | E | E | B | B | E | B | B | E | E | E | E | E | E |
| 61-118: |
B | E | E | B | B | E | E | B | E | E | B | B | E | E | E | E | E | B | E | E | B | B | E | E | B | E | E | B | B | E | E | E | E | E | B | B | B | B | B | B | B | E | E | E | E | E | B | B | B | E | B | B | E | E | B | B | E | E |
| |
| | e(Exposed): 66(55.93%) | b(Buried): 52(44.07%) |
| 1-60: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-118: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| |
| | N(Normal): 118(100%) | T(Disorder): 0(0%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.97 |
96.11 |
| TopL/2 |
0.88 |
92.12 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
95.83 |
| TopL/2 |
96.61 |
| TopL |
77.97 |
| Top2L |
42.80 |
| Alignment |
Number |
| N |
3803 |
| Neff |
1407 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.9881 |
| Model 3 |
0.9891 |
| Model 4 |
0.9985 |
| Model 5 |
0.9122 |
| Average |
0.97197 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 2oz5 |
0.64675 |
| 1ywf |
0.63235 |
| 3gp3 |
0.63125 |
| 2shp |
0.63066 |
| 1fzt |
0.62741 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
95.83 |
| TopL/2 |
96.61 |
| TopL |
80.51 |
| Top2L |
46.61 |
| Alignment |
Number |
| N |
3803 |
| Neff |
1407 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9881 |
| Model 3 |
0.9963 |
| Model 4 |
0.9885 |
| Model 5 |
0.9149 |
| Average |
0.97195 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 1ywf |
0.65712 |
| 2oz5 |
0.63946 |
| 2shp |
0.62585 |
| 2jjd |
0.62141 |
| 6atd |
0.62067 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
95.83 |
| TopL/2 |
96.61 |
| TopL |
81.36 |
| Top2L |
46.19 |
| Alignment |
Number |
| N |
3803 |
| Neff |
1407 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9891 |
| Model 2 |
0.9963 |
| Model 4 |
0.9895 |
| Model 5 |
0.9115 |
| Average |
0.97160 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 2oz5 |
0.64259 |
| 1ywf |
0.62918 |
| 2shp |
0.62811 |
| 5um0 |
0.62516 |
| 2jjd |
0.62459 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
95.83 |
| TopL/2 |
96.61 |
| TopL |
78.81 |
| Top2L |
43.22 |
| Alignment |
Number |
| N |
3803 |
| Neff |
1407 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9985 |
| Model 2 |
0.9885 |
| Model 3 |
0.9895 |
| Model 5 |
0.9115 |
| Average |
0.97200 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 2oz5 |
0.64602 |
| 1ywf |
0.63312 |
| 2shp |
0.62892 |
| 1rii |
0.62743 |
| 1fzt |
0.62710 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
95.83 |
| TopL/2 |
94.92 |
| TopL |
77.97 |
| Top2L |
49.15 |
| Alignment |
Number |
| N |
3803 |
| Neff |
1407 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9122 |
| Model 2 |
0.9149 |
| Model 3 |
0.9115 |
| Model 4 |
0.9115 |
| Average |
0.91253 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 2oz5 |
0.67149 |
| 1ywf |
0.65584 |
| 1fq1 |
0.62551 |
| 3rgq |
0.62539 |
| 2shp |
0.62156 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
