Protein sequence

>B2RID4: 1-415

1-60:

M

A

I

K

P

F

K

G

V

R

P

K

E

L

V

E

Q

V

A

S

R

P

Y

D

V

L

N

S

E

A

R

K

E

A

K

G

N

E

K

S

L

Y

H

I

R

P

E

I

D

F

P

V

G

K

D

E

61-119:

H

D

A

D

V

Y

E

K

A

E

N

F

R

M

F

Q

E

K

G

W

L

V

Q

D

T

K

E

N

Y

V

Y

A

Q

T

M

N

G

K

T

Q

Y

G

L

V

G

A

Y

V

E

D

Y

M

N

G

V

I

K

121-179:

K

H

E

L

T

R

D

K

E

D

R

M

K

H

V

R

V

N

D

A

N

I

E

P

V

F

A

Y

P

E

N

K

E

L

D

A

I

V

K

Y

A

R

P

A

E

Y

D

F

V

A

E

F

D

G

F

181-239:

G

H

F

W

V

I

D

E

A

D

I

K

R

I

T

E

L

F

A

M

P

A

L

Y

I

A

D

G

H

R

S

A

L

V

G

A

E

K

A

K

N

P

N

H

R

G

D

E

Y

N

Y

241-299:

F

M

A

V

C

F

P

A

D

Q

L

T

I

D

Y

N

R

V

K

D

L

N

G

L

S

D

E

F

L

Q

K

L

S

Q

H

F

E

V

E

C

K

G

T

E

Y

R

P

S

K

L

H

N

F

S

L

Y

301-359:

L

G

K

W

Y

S

L

T

A

K

A

G

T

Y

D

N

D

P

I

G

V

L

D

V

T

I

S

N

L

I

L

D

E

I

L

G

I

K

D

L

R

S

D

K

R

I

D

F

V

G

I

R

G

L

G

E

361-415:

L

K

R

V

D

S

G

E

M

R

V

A

L

A

L

Y

P

V

S

M

K

Q

L

M

D

I

A

D

S

G

N

I

M

P

K

T

W

F

E

P

K

L

R

S

G

L

I

H

K

L

S

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

E

C

H

C

H

C

E

C

61-119:

C

H

C

E

C

E

C

E

C

E

C

121-179:

C

H

C

E

C

H

C

E

C

181-239:

E

C

H

C

E

C

H

C

E

241-299:

E

C

E

C

H

E

C

H

C

E

C

E

301-359:

E

C

E

C

H

C

E

C

H

361-415:

H

C

E

C

H

C

E

C

E

C

H(Helix): 124(29.88%)

E(Strand): 88(21.2%)

C(Coil): 203(48.92%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

61-119:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

121-179:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

181-239:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

241-299:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

301-359:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

361-415:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

e(Exposed): 199(47.95%)

b(Buried): 216(52.05%)

Disorder prediction (N: Normal T: Disorder)

1-60:

T

N

61-119:

N

121-179:

N

181-239:

N

241-299:

N

301-359:

N

361-415:

N

N(Normal): 414(99.76%)

T(Disorder): 1(0.24%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.97	96.45
TopL/2	0.92	96.51

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d1"[x]

Model 1 vs Contact (Top L/5)

./work/multicom-B2RID4/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-B2RID4/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-B2RID4/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-B2RID4/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	77.11
TopL/2	71.15
TopL	66.51
Top2L	46.87

( Alignment file )

Alignment	Number
N	2167
Neff	1097

Model comparsion

Model	TM-score
Model 2	0.9727
Model 3	0.8479
Model 4	0.8660
Model 5	0.9560
Average	0.91065

Radius Gyration

RG	RG/(2.0*L^0.4)
21.26	0.95441

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
4ff2	0.40770
4ff3	0.40440
4ff1	0.40348
3c46	0.40301
3q22	0.40276

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 2 Tertiary structure

Predicted Model 2

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d2"[x]

Model 2 vs Contact (Top L/5)

./work/multicom-B2RID4/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-B2RID4/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-B2RID4/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-B2RID4/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	78.31
TopL/2	71.63
TopL	66.51
Top2L	47.83

( Alignment file )

Alignment	Number
N	2167
Neff	1097

Model comparsion

Model	TM-score
Model 1	0.9727
Model 3	0.8602
Model 4	0.8595
Model 5	0.9442
Average	0.90915

Radius Gyration

RG	RG/(2.0*L^0.4)
21.12	0.94812

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3q0a	0.40282

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 3 Tertiary structure

Predicted Model 3

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d3"[x]

Model 3 vs Contact (Top L/5)

./work/multicom-B2RID4/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-B2RID4/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-B2RID4/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-B2RID4/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	80.72
TopL/2	75.00
TopL	71.08
Top2L	53.13

( Alignment file )

Alignment	Number
N	2167
Neff	1097

Model comparsion

Model	TM-score
Model 1	0.8479
Model 2	0.8602
Model 4	0.7859
Model 5	0.8470
Average	0.83525

Radius Gyration

RG	RG/(2.0*L^0.4)
20.83	0.93510

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
	significant

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 4 Tertiary structure

Predicted Model 4

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d4"[x]

Model 4 vs Contact (Top L/5)

./work/multicom-B2RID4/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-B2RID4/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-B2RID4/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-B2RID4/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	77.11
TopL/2	71.15
TopL	69.40
Top2L	52.53

( Alignment file )

Alignment	Number
N	2167
Neff	1097

Model comparsion

Model	TM-score
Model 1	0.8660
Model 2	0.8595
Model 3	0.7859
Model 5	0.8898
Average	0.85030

Radius Gyration

RG	RG/(2.0*L^0.4)
21.72	0.97506

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3c46	0.40717
3q23	0.40666
4ff1	0.40612
4ff4	0.40598
3q0a	0.40597

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 5 Tertiary structure

Predicted Model 5

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d5"[x]

Model 5 vs Contact (Top L/5)

./work/multicom-B2RID4/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-B2RID4/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-B2RID4/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-B2RID4/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	69.88
TopL/2	66.83
TopL	61.45
Top2L	45.18

( Alignment file )

Alignment	Number
N	2167
Neff	1097

Model comparsion

Model	TM-score
Model 1	0.9560
Model 2	0.9442
Model 3	0.8470
Model 4	0.8898
Average	0.90925

Radius Gyration

RG	RG/(2.0*L^0.4)
21.48	0.96428

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
4ff1	0.40454
4ff2	0.40263
3q23	0.40071
3q24	0.40031

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )