Protein sequence

>B2RII7: 1-182

1-60:

M

T

A

K

P

N

T

V

E

Q

F

E

H

V

I

D

I

C

R

E

V

F

Q

K

L

H

D

Y

G

A

S

W

R

V

M

R

P

S

L

T

D

Q

L

Y

I

K

A

N

R

I

R

N

I

Q

M

K

G

61-119:

L

S

K

V

D

E

G

V

E

S

E

F

I

G

V

N

Y

G

V

I

A

L

I

Q

L

E

L

G

V

A

D

T

P

K

M

E

T

E

A

L

R

L

Y

D

L

K

I

R

E

A

M

S

L

M

L

D

K

N

121-179:

H

D

Y

G

E

A

W

R

Q

M

R

V

S

F

A

D

L

I

L

T

K

V

F

R

T

K

E

I

E

D

L

G

D

T

Y

I

S

E

G

V

D

A

N

Y

M

D

M

I

N

Y

A

I

F

A

L

I

Q

L

181-182:

N

G

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

H

C

H

C

H

C

61-119:

C

E

C

H

E

C

H

C

121-179:

C

H

C

H

C

H

C

E

C

H

C

181-182:

C

H(Helix): 124(68.13%)

E(Strand): 5(2.75%)

C(Coil): 53(29.12%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

61-119:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

121-179:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

181-182:

E

e(Exposed): 92(50.55%)

b(Buried): 90(49.45%)

Disorder prediction (N: Normal T: Disorder)

1-60:

T

N

61-119:

N

121-179:

N

181-182:

N

N(Normal): 178(97.8%)

T(Disorder): 4(2.2%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.96	95.04
TopL/2	0.87	90.60

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Model 1 vs Contact (Top L/5)

./work/multicom-B2RII7/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-B2RII7/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-B2RII7/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-B2RII7/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	100.00
TopL	73.63
Top2L	39.56

( Alignment file )

Alignment	Number
N	1735
Neff	97

Model comparsion

Model	TM-score
Model 2	0.9567
Model 3	0.9566
Model 4	0.9526
Model 5	0.9493
Average	0.95380

Radius Gyration

RG	RG/(2.0*L^0.4)
16.24	1.01504

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5myd	0.56394
5myf	0.56279
5myi	0.56008
4olh	0.55404
4pxs	0.55350

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 2 Tertiary structure

Predicted Model 2

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-B2RII7/full_length/B2RII7.casp2.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-B2RII7/full_length/B2RII7.casp2.pdb

The Resolver thinks Pdb

loadClass J.adapter.readers.pdb.PdbReader

JSmol exec jsmolApplet_M23d3 start applet null

Jmol JavaScript applet jsmolApplet_M23d3__346120150284589__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d3__346120150284589__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d3","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=B2RII7","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d3__346120150284589__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d3_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"346120150284589","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=B2RII7"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d3 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d3__346120150284589__ ready

Model 2 vs Contact (Top L/5)

./work/multicom-B2RII7/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-B2RII7/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-B2RII7/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-B2RII7/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	100.00
TopL	73.63
Top2L	39.56

( Alignment file )

Alignment	Number
N	1735
Neff	97

Model comparsion

Model	TM-score
Model 1	0.9567
Model 3	0.9769
Model 4	0.9784
Model 5	0.9807
Average	0.97318

Radius Gyration

RG	RG/(2.0*L^0.4)
16.27	1.01692

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5myd	0.56564
5myf	0.56376
5myi	0.56206
1w2y	0.54948
2cic	0.54333

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 3 Tertiary structure

Predicted Model 3

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-B2RII7/full_length/B2RII7.casp3.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-B2RII7/full_length/B2RII7.casp3.pdb

The Resolver thinks Pdb

Time for openFile(work/multicom-B2RII7/full_length/B2RII7.casp3.pdb): 208 ms

reading 1463 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

1463 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

null

loadClass J.thread.SpinThread

JSmol exec jsmolApplet_M23d4 start applet null

Jmol JavaScript applet jsmolApplet_M23d4__346120150284589__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d4__346120150284589__)

nographics false

headless false

vwrOptions:

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setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=B2RII7"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d4 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d4__346120150284589__ ready

Model 3 vs Contact (Top L/5)

./work/multicom-B2RII7/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-B2RII7/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-B2RII7/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-B2RII7/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	100.00
TopL	71.98
Top2L	39.29

( Alignment file )

Alignment	Number
N	1735
Neff	97

Model comparsion

Model	TM-score
Model 1	0.9566
Model 2	0.9769
Model 4	0.9711
Model 5	0.9675
Average	0.96802

Radius Gyration

RG	RG/(2.0*L^0.4)
16.25	1.01567

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5myd	0.56252
5myf	0.56168
5myi	0.56058
1w2y	0.54858
4px2	0.54673

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 4 Tertiary structure

Predicted Model 4

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-B2RII7/full_length/B2RII7.casp4.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-B2RII7/full_length/B2RII7.casp4.pdb

The Resolver thinks Pdb

Time for openFile(work/multicom-B2RII7/full_length/B2RII7.casp4.pdb): 228 ms

reading 1463 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

1463 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

null

Script completed

Jmol script terminated

JSmol exec jsmolApplet_M23d5 start applet null

Jmol JavaScript applet jsmolApplet_M23d5__346120150284589__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d5__346120150284589__)

nographics false

headless false

vwrOptions:

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setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=B2RII7"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

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useCommandThread: false

appletId:jsmolApplet_M23d5 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d5__346120150284589__ ready

Model 4 vs Contact (Top L/5)

./work/multicom-B2RII7/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-B2RII7/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-B2RII7/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-B2RII7/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	100.00
TopL	73.63
Top2L	40.66

( Alignment file )

Alignment	Number
N	1735
Neff	97

Model comparsion

Model	TM-score
Model 1	0.9526
Model 2	0.9784
Model 3	0.9711
Model 5	0.9716
Average	0.96842

Radius Gyration

RG	RG/(2.0*L^0.4)
16.29	1.01817

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5myd	0.56706
5myf	0.56514
5myi	0.56348
1w2y	0.54744
2cic	0.54276

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 5 Tertiary structure

Predicted Model 5

loadClass core.package

loadClass java.lang.String

loadClass core.package

JSmol exec jsmolApplet_M23d1 start applet null

Jmol JavaScript applet jsmolApplet_M23d1__346120150284589__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d1__346120150284589__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d1","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=B2RII7","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d1__346120150284589__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d1_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"346120150284589","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=B2RII7"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d1 (signed)

loadClass JS.ScriptManager

JSmol exec jsmolApplet_M23d2 start applet null

Jmol JavaScript applet jsmolApplet_M23d2__346120150284589__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jsmolApplet_M23d2__346120150284589__)

nographics false

headless false

vwrOptions:

{ "name":"jsmolApplet_M23d2","applet":true,"documentBase":"http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=B2RII7","platform":"J.awtjs2d.Platform","fullName":"jsmolApplet_M23d2__346120150284589__","codePath":"http://sysbio.rnet.missouri.edu/nihr01duf/js/j2s/","display":"jsmolApplet_M23d2_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"346120150284589","bgcolor":"#FFFFFF" }

setting document base to "http://sysbio.rnet.missouri.edu/nihr01duf/status.php?domain_class=full_length&method=multicom&target_name=B2RII7"

Jmol Version: 14.4.0_2015.12.02 2015-12-01 21:40

java.vendor: Java2Script (HTML5)

java.version: 2015-12-01 12:38:36 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jsmolApplet_M23d2 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d2__346120150284589__ ready

script 1 started

FileManager.getAtomSetCollectionFromFile(work/multicom-B2RII7/full_length/B2RII7.casp5.pdb)

FileManager opening url http://sysbio.rnet.missouri.edu/nihr01duf/work/multicom-B2RII7/full_length/B2RII7.casp5.pdb

The Resolver thinks Pdb

Time for openFile(work/multicom-B2RII7/full_length/B2RII7.casp5.pdb): 220 ms

reading 1463 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

1463 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

null

Script completed

Jmol script terminated

Script completed

Jmol script terminated

Time for openFile(work/multicom-B2RII7/full_length/B2RII7.casp2.pdb): 1495 ms

reading 1463 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

1463 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.0_2015.12.02 2015-12-01 21:40 DSSP analysis for model 1.1 - null

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer for our purposes. At this point in time, we make no guarantee

that this code gives precisely the same analysis as the code available via license

from CMBI at http://swift.cmbi.ru.nl/gv/dssp

All bioshapes have been deleted and must be regenerated.

null

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jsmolApplet_M23d1__346120150284589__ ready

Model 5 vs Contact (Top L/5)

./work/multicom-B2RII7/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-B2RII7/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-B2RII7/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-B2RII7/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	100.00
TopL	73.08
Top2L	39.56

( Alignment file )

Alignment	Number
N	1735
Neff	97

Model comparsion

Model	TM-score
Model 1	0.9493
Model 2	0.9807
Model 3	0.9675
Model 4	0.9716
Average	0.96727

Radius Gyration

RG	RG/(2.0*L^0.4)
16.27	1.01692

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5myd	0.56411
5myf	0.56249
5myi	0.56030
1w2y	0.54594
4px2	0.54335

Note: The model is built by ab initio method, no significant templates are found!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )