Protein sequence

>B2RJX8: 1-194

1-60:

M

E

P

L

A

I

P

E

Y

G

R

N

I

Q

N

M

V

N

Y

C

M

T

I

G

D

R

D

E

R

N

R

C

A

Q

T

I

T

I

M

G

N

M

F

P

E

R

E

N

S

E

T

K

H

I

L

W

D

H

61-119:

L

A

I

M

S

G

F

K

L

D

I

D

Y

P

M

E

I

S

P

E

L

E

R

K

P

K

A

V

S

Y

S

A

N

D

I

V

Y

R

H

Y

G

H

L

I

Q

E

M

I

L

K

A

C

A

M

E

Q

G

E

121-179:

E

R

Y

A

L

E

L

I

A

N

Q

M

K

R

S

Y

L

T

W

N

K

D

T

V

D

Y

K

I

F

K

D

L

Y

E

L

S

E

G

R

I

E

L

T

E

S

C

H

L

T

I

P

N

A

S

D

R

K

181-194:

D

N

T

K

R

N

K

V

F

R

K

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

E

C

H

C

H

C

H

61-119:

H

C

H

C

H

C

H

121-179:

H

C

H

C

E

C

H

C

181-194:

C

H(Helix): 106(54.64%)

E(Strand): 4(2.06%)

C(Coil): 84(43.3%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

61-119:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

121-179:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

181-194:

E

e(Exposed): 114(58.76%)

b(Buried): 80(41.24%)

Disorder prediction (N: Normal T: Disorder)

1-60:

T

N

61-119:

N

121-179:

N

T

181-194:

T

N(Normal): 174(89.69%)

T(Disorder): 20(10.31%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.78	78.09
TopL/2	0.56	59.74

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d1"[x]

Model 1 vs Contact (Top L/5)

./work/multicom-B2RJX8/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-B2RJX8/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-B2RJX8/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-B2RJX8/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	79.38
TopL	43.81
Top2L	22.94

( Alignment file )

Alignment	Number
N	2167
Neff	356

Model comparsion

Model	TM-score
Model 2	0.8789
Model 3	0.7603
Model 4	0.8968
Model 5	0.7868
Average	0.83070

Radius Gyration

RG	RG/(2.0*L^0.4)
19.26	1.17328

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3acs	0.54023
3qg0	0.54012
3qfy	0.53988
3s4b	0.53951
xx09	0.53350

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 2 Tertiary structure

Predicted Model 2

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d2"[x]

Model 2 vs Contact (Top L/5)

./work/multicom-B2RJX8/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-B2RJX8/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-B2RJX8/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-B2RJX8/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	79.38
TopL	45.88
Top2L	24.48

( Alignment file )

Alignment	Number
N	2167
Neff	356

Model comparsion

Model	TM-score
Model 1	0.8789
Model 3	0.8079
Model 4	0.8446
Model 5	0.7754
Average	0.82670

Radius Gyration

RG	RG/(2.0*L^0.4)
20.26	1.23420

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3h7l	0.52498
6ez8	0.52320
4zli	0.52185
5h41	0.51948
5h42	0.51836

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 3 Tertiary structure

Predicted Model 3

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d3"[x]

Model 3 vs Contact (Top L/5)

./work/multicom-B2RJX8/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-B2RJX8/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-B2RJX8/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-B2RJX8/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	80.41
TopL	45.36
Top2L	23.71

( Alignment file )

Alignment	Number
N	2167
Neff	356

Model comparsion

Model	TM-score
Model 1	0.7603
Model 2	0.8079
Model 4	0.7080
Model 5	0.8724
Average	0.78715

Radius Gyration

RG	RG/(2.0*L^0.4)
19.84	1.20862

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5h41	0.55007
3h7l	0.52775
5dgq	0.52540
3s4a	0.52040
2cqt	0.52015

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 4 Tertiary structure

Predicted Model 4

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d4"[x]

Model 4 vs Contact (Top L/5)

./work/multicom-B2RJX8/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-B2RJX8/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-B2RJX8/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-B2RJX8/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	78.35
TopL	44.33
Top2L	22.68

( Alignment file )

Alignment	Number
N	2167
Neff	356

Model comparsion

Model	TM-score
Model 1	0.8968
Model 2	0.8446
Model 3	0.7080
Model 5	0.7485
Average	0.79947

Radius Gyration

RG	RG/(2.0*L^0.4)
19.70	1.20009

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
3h7l	0.55310
5dgr	0.55000
5h42	0.54729
5h41	0.54488
5h3z	0.54227

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 5 Tertiary structure

Predicted Model 5

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d5"[x]

Model 5 vs Contact (Top L/5)

./work/multicom-B2RJX8/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-B2RJX8/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-B2RJX8/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-B2RJX8/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	76.29
TopL	43.81
Top2L	23.71

( Alignment file )

Alignment	Number
N	2167
Neff	356

Model comparsion

Model	TM-score
Model 1	0.7868
Model 2	0.7754
Model 3	0.8724
Model 4	0.7485
Average	0.79578

Radius Gyration

RG	RG/(2.0*L^0.4)
19.25	1.17268

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5h41	0.54879
5z73	0.52789
5z74	0.52573
3s4d	0.51788
3s4a	0.51782

Note: The model is built by ab initio method, no significant templates are found!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )