Protein sequence

>O06173: 1-533

1-60:

M

G

T

E

S

A

G

P

G

P

A

Q

R

I

A

G

Y

T

V

E

G

Q

A

L

Q

L

G

T

V

D

G

E

P

D

P

S

A

Q

I

R

I

P

L

A

T

V

N

R

H

G

L

V

A

G

61-119:

A

T

G

T

G

K

T

K

T

L

Q

L

I

A

E

Q

L

S

A

G

V

A

V

L

M

A

D

V

K

G

D

L

S

G

L

A

R

P

G

E

A

D

K

T

A

R

A

K

D

T

G

D

W

V

P

T

121-179:

A

F

P

V

E

F

L

S

L

G

A

S

G

V

G

V

P

V

R

A

T

I

S

F

G

P

I

L

A

K

V

L

G

L

N

A

T

Q

E

S

T

L

G

L

I

F

H

W

A

D

Q

R

G

L

P

L

D

181-239:

L

K

D

L

R

A

V

I

T

H

L

T

S

D

E

G

K

V

E

L

K

S

L

G

A

V

S

P

T

A

G

V

I

L

R

A

L

V

N

L

E

A

E

G

A

D

T

F

G

E

P

E

L

R

P

E

D

L

241-299:

L

R

V

D

S

Q

G

R

G

I

S

L

E

F

G

S

Q

A

L

R

P

A

M

F

S

T

F

L

M

W

V

L

A

D

L

F

T

F

L

P

E

V

G

D

L

D

K

P

K

L

V

F

D

E

A

H

301-359:

L

F

T

D

A

S

K

A

F

L

E

Q

V

E

Q

T

V

K

L

I

R

S

K

G

V

G

V

F

C

T

Q

L

P

T

D

L

P

N

D

V

L

S

Q

L

G

A

R

I

Q

H

A

L

R

A

F

T

P

D

361-419:

D

H

K

A

L

R

K

T

V

R

T

Y

P

K

T

D

V

Y

D

L

E

S

A

L

T

S

L

G

T

G

E

A

V

T

V

L

S

E

K

G

A

P

T

P

V

A

W

T

R

M

R

A

P

R

S

L

M

A

421-479:

I

G

A

E

A

I

G

A

Q

A

S

L

Q

A

V

Y

G

Q

T

I

D

R

P

S

A

H

E

I

L

S

A

K

L

A

P

A

Q

E

A

P

A

Q

E

A

P

A

P

R

G

Q

Y

D

P

L

P

W

P

481-533:

D

F

E

V

P

M

P

A

P

V

E

P

Q

G

P

A

V

W

E

I

L

K

N

P

T

V

K

S

V

L

N

T

A

R

E

I

T

R

S

I

F

G

T

G

R

K

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

H

C

E

C

E

C

H

C

E

61-119:

C

H

C

E

C

H

C

H

C

121-179:

C

E

H

C

H

C

H

C

H

C

181-239:

H

C

H

C

H

C

H

C

H

241-299:

H

C

E

C

H

C

E

H

301-359:

H

C

H

C

E

C

H

C

H

361-419:

H

C

H

C

E

C

E

C

421-479:

C

H

C

H

C

H

C

H

C

481-533:

C

H

C

H(Helix): 254(47.65%)

E(Strand): 57(10.69%)

C(Coil): 222(41.65%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

61-119:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

121-179:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

181-239:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

241-299:

B

E

B

E

B

E

B

E

B

E

B

E

B

301-359:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

361-419:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

421-479:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

481-533:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

e(Exposed): 276(51.78%)

b(Buried): 257(48.22%)

Disorder prediction (N: Normal T: Disorder)

1-60:

T

N

61-119:

N

121-179:

N

181-239:

N

241-299:

N

301-359:

N

361-419:

N

421-479:

N

T

481-533:

T

N

T

N(Normal): 460(86.3%)

T(Disorder): 73(13.7%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.84	84.05
TopL/2	0.69	72.90

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d1"[x]

Model 1 vs Contact (Top L/5)

./work/multicom-O06173/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-O06173/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-O06173/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-O06173/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	89.72
TopL/2	88.76
TopL	66.42
Top2L	41.74

( Alignment file )

Alignment	Number
N	28578
Neff	2917

Model comparsion

Model	TM-score
Model 2	0.8541
Model 3	0.8455
Model 4	0.8718
Model 5	0.8403
Average	0.85293

Radius Gyration

RG	RG/(2.0*L^0.4)
27.95	1.13498

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
1e9r	0.58734
1gl6	0.58697
1e9s	0.58683
1gki	0.58668
1gl7	0.58413

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 2 Tertiary structure

Predicted Model 2

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d2"[x]

Model 2 vs Contact (Top L/5)

./work/multicom-O06173/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-O06173/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-O06173/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-O06173/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	88.79
TopL/2	86.52
TopL	64.92
Top2L	39.49

( Alignment file )

Alignment	Number
N	28578
Neff	2917

Model comparsion

Model	TM-score
Model 1	0.8541
Model 3	0.8430
Model 4	0.8419
Model 5	0.8298
Average	0.84220

Radius Gyration

RG	RG/(2.0*L^0.4)
27.17	1.10330

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
1e9r	0.57634
1gl6	0.57604
1e9s	0.57573
1gki	0.57461
1gl7	0.57316

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 3 Tertiary structure

Predicted Model 3

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d3"[x]

Model 3 vs Contact (Top L/5)

./work/multicom-O06173/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-O06173/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-O06173/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-O06173/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	89.72
TopL/2	89.14
TopL	66.23
Top2L	40.99

( Alignment file )

Alignment	Number
N	28578
Neff	2917

Model comparsion

Model	TM-score
Model 1	0.8455
Model 2	0.8430
Model 4	0.8380
Model 5	0.8296
Average	0.83903

Radius Gyration

RG	RG/(2.0*L^0.4)
29.11	1.18208

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
1e9s	0.58020
1e9r	0.57990
1gl6	0.57945
1gki	0.57897
1gl7	0.57765

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 4 Tertiary structure

Predicted Model 4

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d4"[x]

Model 4 vs Contact (Top L/5)

./work/multicom-O06173/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-O06173/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-O06173/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-O06173/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	89.72
TopL/2	87.27
TopL	64.92
Top2L	39.96

( Alignment file )

Alignment	Number
N	28578
Neff	2917

Model comparsion

Model	TM-score
Model 1	0.8718
Model 2	0.8419
Model 3	0.8380
Model 5	0.8360
Average	0.84692

Radius Gyration

RG	RG/(2.0*L^0.4)
27.72	1.12564

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
1e9s	0.57603
1e9r	0.57494
1gki	0.57474
1gl6	0.57389
1gl7	0.57366

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 5 Tertiary structure

Predicted Model 5

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d5"[x]

Model 5 vs Contact (Top L/5)

./work/multicom-O06173/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-O06173/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-O06173/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-O06173/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	88.79
TopL/2	88.39
TopL	66.04
Top2L	40.43

( Alignment file )

Alignment	Number
N	28578
Neff	2917

Model comparsion

Model	TM-score
Model 1	0.8403
Model 2	0.8298
Model 3	0.8296
Model 4	0.8360
Average	0.83393

Radius Gyration

RG	RG/(2.0*L^0.4)
38.50	1.56339

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
1e9r	0.57711
1e9s	0.57634
1gl6	0.57588
1gki	0.57481
1gl7	0.57327

Note: The model is built by ab initio method, no significant templates are found!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )