Protein sequence

>O25523: 1-313

1-60:

M

K

P

Q

D

I

E

I

V

Q

S

V

L

E

I

T

G

P

I

K

P

T

E

V

Y

D

K

A

K

E

L

F

E

K

G

E

I

T

N

M

F

D

C

G

K

T

P

H

Q

S

V

S

Y

I

Y

T

A

L

61-119:

N

K

G

E

L

P

F

K

V

Q

E

N

P

T

L

I

A

L

K

D

A

K

E

L

G

L

D

A

Q

K

I

S

A

P

S

K

I

A

H

E

R

D

L

H

P

F

L

T

Y

M

A

I

N

E

N

121-179:

L

K

C

Y

T

K

T

I

F

H

E

S

K

S

I

K

G

M

D

R

W

L

Y

P

D

M

V

G

V

R

F

L

H

A

E

L

S

N

E

N

L

I

A

F

S

K

F

D

T

L

P

I

K

L

V

S

F

181-239:

E

L

K

E

I

S

V

H

N

C

R

E

C

Y

F

Q

A

I

S

N

S

W

A

N

E

G

Y

L

V

G

R

H

I

D

T

H

N

P

Q

L

M

D

L

K

R

L

H

A

S

F

G

I

G

V

I

D

L

241-299:

R

T

N

E

D

K

S

A

I

L

N

A

K

Y

K

E

K

I

D

Y

T

V

A

S

E

L

S

A

K

N

E

K

F

S

G

F

L

K

S

V

D

Y

D

P

N

H

P

Q

R

Y

K

D

E

F

D

E

V

K

301-313:

K

E

L

Y

P

N

P

S

L

S

F

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

H

C

H

C

H

61-119:

C

E

C

E

C

H

C

121-179:

C

E

C

H

C

E

C

E

C

H

C

H

C

E

181-239:

E

C

H

C

H

C

E

C

H

C

E

241-299:

C

E

C

H

C

H

C

H

301-313:

C

H

C

H(Helix): 129(41.21%)

E(Strand): 49(15.65%)

C(Coil): 135(43.13%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

61-119:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

121-179:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

181-239:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

241-299:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

301-313:

E

B

E

B

E

e(Exposed): 169(53.99%)

b(Buried): 144(46.01%)

Disorder prediction (N: Normal T: Disorder)

1-60:

N

61-119:

N

T

N

121-179:

N

181-239:

N

241-299:

N

301-313:

N

T

N(Normal): 296(94.57%)

T(Disorder): 17(5.43%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.90	89.92
TopL/2	0.78	81.69

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d1"[x]

Model 1 vs Contact (Top L/5)

./work/multicom-O25523/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-O25523/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-O25523/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-O25523/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	90.48
TopL/2	80.89
TopL	58.47
Top2L	34.35

( Alignment file )

Alignment	Number
N	1606
Neff	237

Model comparsion

Model	TM-score
Model 2	0.5810
Model 3	0.5703
Model 4	0.6838
Model 5	0.5895
Average	0.60615

Radius Gyration

RG	RG/(2.0*L^0.4)
27.53	1.38393

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5mz6	0.46366
5u1t	0.44702
1llw	0.44319
6s6u	0.43356
6s6x	0.43187

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 2 Tertiary structure

Predicted Model 2

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d2"[x]

Model 2 vs Contact (Top L/5)

./work/multicom-O25523/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-O25523/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-O25523/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-O25523/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	90.48
TopL/2	78.98
TopL	58.15
Top2L	34.35

( Alignment file )

Alignment	Number
N	1606
Neff	237

Model comparsion

Model	TM-score
Model 1	0.5810
Model 3	0.6452
Model 4	0.6717
Model 5	0.5857
Average	0.62090

Radius Gyration

RG	RG/(2.0*L^0.4)
24.47	1.23010

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
4r04	0.48044
6ar6	0.46559
5edu	0.44751
6oq5	0.44131
5lqw	0.43801

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 3 Tertiary structure

Predicted Model 3

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d3"[x]

Model 3 vs Contact (Top L/5)

./work/multicom-O25523/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-O25523/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-O25523/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-O25523/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	90.48
TopL/2	80.25
TopL	57.83
Top2L	34.35

( Alignment file )

Alignment	Number
N	1606
Neff	237

Model comparsion

Model	TM-score
Model 1	0.5703
Model 2	0.6452
Model 4	0.5880
Model 5	0.5457
Average	0.58730

Radius Gyration

RG	RG/(2.0*L^0.4)
26.55	1.33467

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5u1t	0.45779
4r04	0.45650
6eot	0.45300
5kf7	0.44825
6eoo	0.44710

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 4 Tertiary structure

Predicted Model 4

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d4"[x]

Model 4 vs Contact (Top L/5)

./work/multicom-O25523/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-O25523/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-O25523/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-O25523/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	90.48
TopL/2	80.25
TopL	57.83
Top2L	34.82

( Alignment file )

Alignment	Number
N	1606
Neff	237

Model comparsion

Model	TM-score
Model 1	0.6838
Model 2	0.6717
Model 3	0.5880
Model 5	0.5814
Average	0.63122

Radius Gyration

RG	RG/(2.0*L^0.4)
25.26	1.26982

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
5mz6	0.45032
6k8t	0.43911
6k8s	0.43899
6k8u	0.43801
5kf6	0.43719

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Predicted Top 5 Tertiary structure

Predicted Model 5

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d5"[x]

Model 5 vs Contact (Top L/5)

./work/multicom-O25523/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-O25523/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-O25523/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-O25523/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	90.48
TopL/2	78.98
TopL	58.15
Top2L	34.50

( Alignment file )

Alignment	Number
N	1606
Neff	237

Model comparsion

Model	TM-score
Model 1	0.5895
Model 2	0.5857
Model 3	0.5457
Model 4	0.5814
Average	0.57557

Radius Gyration

RG	RG/(2.0*L^0.4)
26.66	1.34020

Note: Radius Gyration is calculated based on wiki

Similar pdbs

PDB	TM-score
6dmo	0.43231
6rvd	0.43092
1pj5	0.43041
4zsf	0.43020
3gsi	0.43002

Note: This is multi-domain structure, check alignments and domain qualities in individual domains!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )