Protein sequence

>O53246: 1-321

1-60:

M

A

G

A

K

H

A

G

R

I

V

A

I

T

A

V

I

L

A

C

S

G

S

K

G

A

G

S

G

H

A

G

K

A

R

S

A

V

T

D

A

D

W

K

P

V

A

D

A

L

G

R

61-119:

S

G

K

L

G

D

N

T

A

Y

R

I

N

L

P

R

N

D

L

H

I

T

S

Y

G

V

D

I

K

P

G

L

S

L

G

Y

A

F

A

R

Y

D

N

E

T

L

M

G

D

L

V

I

T

E

121-179:

E

L

P

K

V

T

D

A

L

Q

A

H

G

I

A

Q

T

A

L

H

K

H

L

Q

D

P

V

W

T

H

I

H

G

M

G

D

A

R

L

A

Q

G

L

K

A

L

D

A

T

I

G

P

181-239:

T

P

A

R

Q

P

V

D

I

D

V

A

G

V

D

Q

A

L

G

R

K

G

T

Q

D

G

L

M

K

Y

S

I

P

R

K

D

T

I

E

D

G

H

V

L

P

A

V

S

L

N

L

T

V

I

241-299:

N

F

Q

P

V

G

R

G

R

A

I

N

G

D

F

I

L

I

A

P

E

V

Q

E

V

I

R

A

M

R

A

G

N

I

T

I

V

E

L

H

N

H

G

L

T

E

P

R

L

F

Y

M

H

Y

W

A

V

D

301-321:

D

A

V

T

L

A

R

A

L

R

P

A

M

D

A

T

N

L

Q

S

Secondary structure prediction (H: Helix E: Strand C: Coil)

1-60:

C

H

C

H

C

H

C

61-119:

C

E

C

E

C

E

C

H

E

C

E

C

E

H

121-179:

H

C

E

H

C

E

C

H

C

181-239:

C

H

C

E

C

E

C

E

241-299:

E

C

E

C

E

H

C

E

H

C

E

C

301-321:

C

H

C

H(Helix): 103(32.09%)

E(Strand): 69(21.5%)

C(Coil): 149(46.42%)

Solvent accessibility prediction (e: Exposed b: Buried)

1-60:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

61-119:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

121-179:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

181-239:

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

241-299:

B

E

B

E

B

E

B

E

B

E

B

E

B

E

B

E

301-321:

E

B

E

B

E

B

E

B

E

e(Exposed): 150(46.73%)

b(Buried): 171(53.27%)

Disorder prediction (N: Normal T: Disorder)

1-60:

T

N

T

N

61-119:

N

121-179:

N

181-239:

N

241-299:

N

301-321:

N

T

N(Normal): 287(89.41%)

T(Disorder): 34(10.59%)

Predicted contact map and distance map

Predicted distance map

Predicted contact map

Probability to Precision

Long-Range	Average probability	Predicted precision
TopL/5	0.97	95.88
TopL/2	0.89	92.74

Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset

Predicted Top 1 Tertiary structure

Predicted Model 1

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d1"[x]

Model 1 vs Contact (Top L/5)

./work/multicom-O53246/full_length/casp1_contact/L5_long.png

Model 1 vs Contact (Top L/2)

./work/multicom-O53246/full_length/casp1_contact/L2_long.png

Model 1 vs Contact (Top L)

./work/multicom-O53246/full_length/casp1_contact/L_long.png

Model 1 vs Contact (Top 2L)

./work/multicom-O53246/full_length/casp1_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	96.89
TopL	73.21
Top2L	44.86

( Alignment file )

Alignment	Number
N	1479
Neff	137

Model comparsion

Model	TM-score
Model 2	0.9529
Model 3	0.9517
Model 4	0.9495
Model 5	0.9534
Average	0.95188

Radius Gyration

RG	RG/(2.0*L^0.4)
19.56	0.97337

Note: Radius Gyration is calculated based on wiki

Similar pdbs

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 2 Tertiary structure

Predicted Model 2

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d2"[x]

Model 2 vs Contact (Top L/5)

./work/multicom-O53246/full_length/casp2_contact/L5_long.png

Model 2 vs Contact (Top L/2)

./work/multicom-O53246/full_length/casp2_contact/L2_long.png

Model 2 vs Contact (Top L)

./work/multicom-O53246/full_length/casp2_contact/L_long.png

Model 2 vs Contact (Top 2L)

./work/multicom-O53246/full_length/casp2_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	95.65
TopL	74.14
Top2L	44.86

( Alignment file )

Alignment	Number
N	1479
Neff	137

Model comparsion

Model	TM-score
Model 1	0.9529
Model 3	0.9478
Model 4	0.9550
Model 5	0.9345
Average	0.94755

Radius Gyration

RG	RG/(2.0*L^0.4)
19.48	0.96939

Note: Radius Gyration is calculated based on wiki

Similar pdbs

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 3 Tertiary structure

Predicted Model 3

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d3"[x]

Model 3 vs Contact (Top L/5)

./work/multicom-O53246/full_length/casp3_contact/L5_long.png

Model 3 vs Contact (Top L/2)

./work/multicom-O53246/full_length/casp3_contact/L2_long.png

Model 3 vs Contact (Top L)

./work/multicom-O53246/full_length/casp3_contact/L_long.png

Model 3 vs Contact (Top 2L)

./work/multicom-O53246/full_length/casp3_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	96.27
TopL	71.34
Top2L	42.83

( Alignment file )

Alignment	Number
N	1479
Neff	137

Model comparsion

Model	TM-score
Model 1	0.9517
Model 2	0.9478
Model 4	0.9484
Model 5	0.9501
Average	0.94950

Radius Gyration

RG	RG/(2.0*L^0.4)
19.50	0.97039

Note: Radius Gyration is calculated based on wiki

Similar pdbs

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 4 Tertiary structure

Predicted Model 4

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d4"[x]

Model 4 vs Contact (Top L/5)

./work/multicom-O53246/full_length/casp4_contact/L5_long.png

Model 4 vs Contact (Top L/2)

./work/multicom-O53246/full_length/casp4_contact/L2_long.png

Model 4 vs Contact (Top L)

./work/multicom-O53246/full_length/casp4_contact/L_long.png

Model 4 vs Contact (Top 2L)

./work/multicom-O53246/full_length/casp4_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	96.89
TopL	75.08
Top2L	44.70

( Alignment file )

Alignment	Number
N	1479
Neff	137

Model comparsion

Model	TM-score
Model 1	0.9495
Model 2	0.9550
Model 3	0.9484
Model 5	0.9364
Average	0.94732

Radius Gyration

RG	RG/(2.0*L^0.4)
19.49	0.96989

Note: Radius Gyration is calculated based on wiki

Similar pdbs

Note: The model is built by ab initio method, no significant templates are found!

Predicted Top 5 Tertiary structure

Predicted Model 5

Jmol._Canvas2D (Jmol) "jsmolApplet_M23d5"[x]

Model 5 vs Contact (Top L/5)

./work/multicom-O53246/full_length/casp5_contact/L5_long.png

Model 5 vs Contact (Top L/2)

./work/multicom-O53246/full_length/casp5_contact/L2_long.png

Model 5 vs Contact (Top L)

./work/multicom-O53246/full_length/casp5_contact/L_long.png

Model 5 vs Contact (Top 2L)

./work/multicom-O53246/full_length/casp5_contact/2L_long.png

Predicted Contact Accuracy
( Contact file )

Long-Range	Precision
TopL/5	100.00
TopL/2	95.65
TopL	74.77
Top2L	45.02

( Alignment file )

Alignment	Number
N	1479
Neff	137

Model comparsion

Model	TM-score
Model 1	0.9534
Model 2	0.9345
Model 3	0.9501
Model 4	0.9364
Average	0.94360

Radius Gyration

RG	RG/(2.0*L^0.4)
19.46	0.96840

Note: Radius Gyration is calculated based on wiki

Similar pdbs

Note: The model is built by ab initio method, no significant templates are found!

Domain Boundary prediction ( View )

Protein sequence

Secondary structure prediction (H: Helix E: Strand C: Coil)

Solvent accessibility prediction (e: Exposed b: Buried)

Disorder prediction (N: Normal T: Disorder)

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy
( Contact file )

( Alignment file )

Model comparsion

Radius Gyration

Similar pdbs

References

Domain Boundary prediction ( View )

Predicted contact map and distance map

Probability to Precision

Predicted Top 1 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 2 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 3 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 4 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

Predicted Top 5 Tertiary structure

Predicted Contact Accuracy ( Contact file )

Model comparsion

Radius Gyration

Similar pdbs

References

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )

Predicted Contact Accuracy
( Contact file )