P0AAS5
multicom
P0AAS5
full_length
P0AAS5
Results of Structure Prediction for Target Name: P0AAS5 ( Click 
)
Domain Boundary prediction ( View )
>P0AAS5: 1-271
| 1-60: |
M | T | I | I | H | P | L | L | A | S | S | S | A | P | N | Y | R | Q | S | W | R | L | A | G | V | W | R | R | A | I | N | L | M | T | E | S | G | E | L | L | T | L | H | R | Q | G | S | G | F | G | P | G | G | W | V | L | R | R | A | Q |
| 61-119: |
F | D | A | L | C | G | G | L | C | G | N | E | R | P | Q | V | V | A | Q | G | I | R | L | G | R | F | T | V | K | Q | P | Q | R | Y | C | L | L | R | I | T | P | P | A | H | P | Q | P | L | A | A | A | W | M | Q | R | A | E | E | T | G |
| 121-179: |
L | F | G | P | L | A | L | A | A | S | D | P | L | P | A | E | L | R | Q | F | R | H | C | F | Q | A | A | L | N | G | V | K | T | D | W | R | H | W | L | G | K | G | P | G | L | T | P | S | H | D | D | T | L | S | G | M | L | L | A | A |
| 181-239: |
W | Y | Y | G | A | L | D | A | R | S | G | R | P | F | F | A | C | S | D | N | L | Q | L | V | T | T | A | V | S | V | S | Y | L | R | Y | A | A | Q | G | Y | F | A | S | P | L | L | H | F | V | H | A | L | S | C | P | K | R | T | A | V |
| 241-271: |
A | I | D | S | L | L | A | L | G | H | T | S | G | A | D | T | L | L | G | F | W | L | G | Q | Q | L | L | Q | G | K | P |
| 1-60: |
C | C | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | E | E | E | E | E | E | E | H | C | C | E | E | E | E | C | C | C | C | E | E | E | E | E | E | E | C | C | C | C | C | C | C | C | E | E | E | E | C | H | H | H |
| 61-119: |
H | H | H | H | H | H | H | C | C | C | C | C | E | E | E | E | E | C | C | C | E | E | E | C | C | E | E | E | E | C | C | C | C | C | E | E | E | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C |
| 121-179: |
C | C | C | C | H | H | H | H | H | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H |
| 181-239: |
H | H | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | H | H | H | H | H | H | H | H | H | H | C | C | C | H | H | H | H | H |
| 241-271: |
H | H | H | H | H | H | H | H | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C |
| |
| | H(Helix): 142(52.4%) | E(Strand): 37(13.65%) | C(Coil): 92(33.95%) |
| 1-60: |
E | E | B | B | E | B | B | B | E | B | E | E | B | B | E | E | E | E | E | B | E | B | B | B | B | B | E | B | B | B | B | B | B | B | E | E | E | B | B | B | B | B | B | B | E | E | E | E | B | B | B | B | B | B | B | B | E | E | E | E |
| 61-119: |
B | E | E | B | B | E | E | B | E | E | E | E | E | B | E | B | E | E | E | B | B | B | B | B | B | B | B | B | E | B | E | E | E | B | B | B | B | E | B | E | E | E | B | E | E | E | E | B | B | E | B | B | B | E | B | B | E | E | B | B |
| 121-179: |
B | B | B | E | B | B | E | B | B | E | E | E | B | E | E | B | B | E | E | B | B | E | B | B | E | E | B | B | E | E | E | E | B | E | B | B | B | B | B | B | B | B | E | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B |
| 181-239: |
B | B | B | E | E | B | E | E | E | B | B | E | E | B | B | E | B | B | E | E | B | E | E | B | B | B | E | B | B | B | B | B | B | E | B | B | B | E | E | B | B | B | E | B | B | B | E | B | B | E | B | B | E | E | E | E | E | B | E | E |
| 241-271: |
B | B | E | E | B | B | E | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | E | B | B | E | E | E | E |
| |
| | e(Exposed): 105(38.75%) | b(Buried): 166(61.25%) |
| 1-60: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-119: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 121-179: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 181-239: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 241-271: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T |
| |
| | N(Normal): 270(99.63%) | T(Disorder): 1(0.37%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.92 |
91.89 |
| TopL/2 |
0.79 |
82.31 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
94.85 |
| TopL |
71.59 |
| Top2L |
39.48 |
| Alignment |
Number |
| N |
1194 |
| Neff |
697 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.9698 |
| Model 3 |
0.9692 |
| Model 4 |
0.8616 |
| Model 5 |
0.9933 |
| Average |
0.94848 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6ql6 |
0.46432 |
| 6ql9 |
0.46322 |
| 6ql7 |
0.46248 |
| 6u5w |
0.45954 |
| 5y5z |
0.44965 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
94.12 |
| TopL |
64.58 |
| Top2L |
34.32 |
| Alignment |
Number |
| N |
1194 |
| Neff |
697 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9698 |
| Model 3 |
0.9984 |
| Model 4 |
0.8147 |
| Model 5 |
0.9718 |
| Average |
0.93867 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6ql9 |
0.45323 |
| 6ql7 |
0.44954 |
| 5no8 |
0.44849 |
| 5nok |
0.44479 |
| 4zlg |
0.44250 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
94.12 |
| TopL |
64.58 |
| Top2L |
34.32 |
| Alignment |
Number |
| N |
1194 |
| Neff |
697 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9692 |
| Model 2 |
0.9984 |
| Model 4 |
0.8174 |
| Model 5 |
0.9721 |
| Average |
0.93928 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6ql7 |
0.45325 |
| 6ql9 |
0.45065 |
| 2uv8 |
0.44895 |
| 6u5w |
0.44678 |
| 5y5z |
0.44265 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
93.38 |
| TopL |
69.37 |
| Top2L |
45.02 |
| Alignment |
Number |
| N |
1194 |
| Neff |
697 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.8616 |
| Model 2 |
0.8147 |
| Model 3 |
0.8174 |
| Model 5 |
0.8683 |
| Average |
0.84050 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5y5z |
0.46959 |
| 5zea |
0.46708 |
| 5knd |
0.46632 |
| 3vr6 |
0.46625 |
| 3gqb |
0.46541 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
95.59 |
| TopL |
68.63 |
| Top2L |
37.82 |
| Alignment |
Number |
| N |
1194 |
| Neff |
697 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.9933 |
| Model 2 |
0.9718 |
| Model 3 |
0.9721 |
| Model 4 |
0.8683 |
| Average |
0.95137 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6ql9 |
0.46549 |
| 6ql7 |
0.45339 |
| 5no8 |
0.45221 |
| 6u5w |
0.44814 |
| 6ggy |
0.44730 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
