P10747
multicom
P10747
full_length
P10747
Results of Structure Prediction for Target Name: P10747 ( Click 
)
Domain Boundary prediction ( View )
>P10747: 1-220
| 1-60: |
M | L | R | L | L | L | A | L | N | L | F | P | S | I | Q | V | T | G | N | K | I | L | V | K | Q | S | P | M | L | V | A | Y | D | N | A | V | N | L | S | C | K | Y | S | Y | N | L | F | S | R | E | F | R | A | S | L | H | K | G | L | D |
| 61-119: |
S | A | V | E | V | C | V | V | Y | G | N | Y | S | Q | Q | L | Q | V | Y | S | K | T | G | F | N | C | D | G | K | L | G | N | E | S | V | T | F | Y | L | Q | N | L | Y | V | N | Q | T | D | I | Y | F | C | K | I | E | V | M | Y | P | P |
| 121-179: |
P | Y | L | D | N | E | K | S | N | G | T | I | I | H | V | K | G | K | H | L | C | P | S | P | L | F | P | G | P | S | K | P | F | W | V | L | V | V | V | G | G | V | L | A | C | Y | S | L | L | V | T | V | A | F | I | I | F | W | V | R |
| 181-220: |
S | K | R | S | R | L | L | H | S | D | Y | M | N | M | T | P | R | R | P | G | P | T | R | K | H | Y | Q | P | Y | A | P | P | R | D | F | A | A | Y | R | S |
| 1-60: |
C | C | E | E | E | E | E | E | E | E | E | E | C | C | C | C | C | C | C | C | E | C | E | E | C | C | C | E | E | E | C | E | C | C | E | E | E | E | E | E | E | E | C | C | C | C | C | C | C | E | E | E | E | E | E | E | E | C | C | C |
| 61-119: |
C | C | C | E | E | E | E | E | E | E | E | C | C | C | C | C | E | E | E | C | C | C | C | C | E | E | E | E | E | E | C | C | C | E | E | E | E | E | E | E | C | C | C | H | H | H | C | E | E | E | E | E | E | E | E | E | E | E | C | C |
| 121-179: |
C | C | E | E | E | C | C | C | C | C | E | E | E | E | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H |
| 181-220: |
H | H | C | C | C | C | C | C | C | C | E | E | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | H | H | H | H | C | C |
| |
| | H(Helix): 39(17.73%) | E(Strand): 77(35%) | C(Coil): 104(47.27%) |
| 1-60: |
E | B | B | B | B | B | B | B | B | B | B | B | B | B | E | B | B | E | E | E | B | E | B | E | B | E | E | E | B | E | B | E | E | E | B | B | E | B | E | B | E | B | E | E | B | E | E | E | E | B | B | B | B | B | B | B | B | B | E | E |
| 61-119: |
E | E | E | E | B | B | B | B | B | B | B | E | E | E | E | E | E | E | B | B | B | B | E | B | E | B | E | B | E | E | E | E | E | B | B | B | B | E | B | E | E | B | E | E | E | B | E | E | B | B | B | B | E | B | B | B | B | E | E | E |
| 121-179: |
E | B | B | B | B | E | E | B | E | B | B | E | B | E | B | E | E | E | E | E | B | E | E | E | E | E | E | E | E | E | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | B | E |
| 181-220: |
E | E | E | E | E | E | B | E | E | E | B | B | E | B | E | E | E | E | E | E | E | E | E | E | E | E | E | B | B | B | B | B | E | E | B | E | B | B | E | E |
| |
| | e(Exposed): 105(47.73%) | b(Buried): 115(52.27%) |
| 1-60: |
T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-119: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 121-179: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 181-220: |
N | N | N | N | N | N | N | T | T | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| |
| | N(Normal): 217(98.64%) | T(Disorder): 3(1.36%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.96 |
95.15 |
| TopL/2 |
0.81 |
85.25 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
86.36 |
| TopL |
64.55 |
| Top2L |
37.05 |
| Alignment |
Number |
| N |
6238 |
| Neff |
1413 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.4985 |
| Model 3 |
0.4929 |
| Model 4 |
0.5874 |
| Model 5 |
0.6851 |
| Average |
0.56598 |
Radius Gyration
|
|
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
97.27 |
| TopL |
71.36 |
| Top2L |
39.32 |
| Alignment |
Number |
| N |
6238 |
| Neff |
1413 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.4985 |
| Model 3 |
0.6127 |
| Model 4 |
0.4695 |
| Model 5 |
0.4903 |
| Average |
0.51775 |
Radius Gyration
|
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
98.18 |
| TopL |
73.64 |
| Top2L |
40.23 |
| Alignment |
Number |
| N |
6238 |
| Neff |
1413 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.4929 |
| Model 2 |
0.6127 |
| Model 4 |
0.4683 |
| Model 5 |
0.4810 |
| Average |
0.51372 |
Radius Gyration
|
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
88.18 |
| TopL |
62.27 |
| Top2L |
36.14 |
| Alignment |
Number |
| N |
6238 |
| Neff |
1413 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.5874 |
| Model 2 |
0.4695 |
| Model 3 |
0.4683 |
| Model 5 |
0.5855 |
| Average |
0.52768 |
Radius Gyration
|
|
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
100.00 |
| TopL/2 |
88.18 |
| TopL |
61.36 |
| Top2L |
34.32 |
| Alignment |
Number |
| N |
6238 |
| Neff |
1413 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.6851 |
| Model 2 |
0.4903 |
| Model 3 |
0.4810 |
| Model 4 |
0.5855 |
| Average |
0.56048 |
Radius Gyration
|
|
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
