P32694
multicom
P32694
full_length
P32694
Results of Structure Prediction for Target Name: P32694 ( Click 
)
Domain Boundary prediction ( View )
>P32694: 1-235
| 1-60: |
M | W | V | N | K | Y | I | D | D | C | T | D | E | D | L | N | D | R | D | F | I | A | S | V | V | D | R | A | I | F | H | F | A | I | N | S | I | C | N | P | G | D | N | K | D | A | M | P | I | E | Q | C | T | F | D | V | E | T | K | N |
| 61-119: |
D | L | P | S | T | V | Q | L | F | Y | E | E | S | K | D | N | E | P | L | A | N | I | H | F | Q | A | I | G | S | G | F | L | T | F | V | N | A | C | Q | E | H | D | D | N | S | L | K | L | F | A | S | L | L | I | S | L | S | Y | S | S |
| 121-179: |
A | Y | A | D | L | S | E | T | V | Y | I | N | E | N | N | E | S | Y | L | K | A | Q | F | E | K | L | S | Q | R | D | M | K | K | Y | L | G | E | M | K | R | L | A | D | G | G | E | M | N | F | D | G | Y | L | D | K | M | S | H | L | V |
| 181-235: |
N | E | G | T | L | D | P | D | I | L | S | K | M | R | D | A | A | P | Q | L | I | S | F | A | K | S | F | D | P | T | S | K | E | E | I | K | I | L | T | D | T | S | K | L | I | Y | D | L | F | G | V | K | S | E | K |
| 1-60: |
C | C | H | H | H | H | H | C | C | C | C | C | H | H | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | C | C | C | C | E | E | E | E | E | E | E | E | E | C | C |
| 61-119: |
C | C | C | C | E | E | E | E | E | E | E | C | C | C | C | C | C | C | C | C | E | E | E | E | E | E | C | C | C | C | E | E | E | H | H | H | H | H | H | H | H | H | H | C | C | C | H | H | H | H | H | H | H | H | H | H | C | H | H | H |
| 121-179: |
H | H | H | H | H | H | H | H | E | E | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H |
| 181-235: |
C | C | C | C | C | C | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | H | C | C | C | C | C | C | C | C | C | E | E | E | E | C | C | H | H | H | H | H | H | H | H | H | C | C | C | C | C | C |
|
| | H(Helix): 124(52.77%) | E(Strand): 31(13.19%) | C(Coil): 80(34.04%) |
| 1-60: |
E | E | B | E | E | B | B | E | E | B | E | E | E | E | B | E | E | E | E | B | B | B | B | B | B | E | E | B | B | B | B | B | B | B | B | B | B | B | B | E | E | E | E | E | E | B | E | B | B | E | E | B | E | B | E | B | E | E | E | E |
| 61-119: |
E | B | E | E | B | B | B | B | B | B | E | E | B | E | E | E | E | E | B | B | E | B | B | B | E | B | B | B | E | B | B | B | B | B | B | B | B | B | E | E | E | E | E | E | E | B | E | E | B | B | B | B | B | B | B | B | B | B | B | B |
| 121-179: |
B | B | B | E | B | B | E | E | B | E | B | B | E | E | B | E | E | B | B | E | E | B | B | E | E | B | B | E | E | E | B | E | E | B | B | E | E | B | E | E | B | B | E | E | E | E | B | E | B | E | E | B | B | E | E | B | E | E | B | B |
| 181-235: |
E | E | E | E | E | E | B | E | B | B | E | E | B | E | E | B | B | E | E | B | B | E | B | B | E | E | B | E | E | E | E | E | E | E | B | E | B | B | E | E | B | E | E | B | B | B | B | B | B | B | B | E | E | E | E |
|
| | e(Exposed): 117(49.79%) | b(Buried): 118(50.21%) |
| 1-60: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 61-119: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 121-179: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N |
| 181-235: |
N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | N | T | T |
|
| | N(Normal): 233(99.15%) | T(Disorder): 2(0.85%) |
Predicted contact map and distance map
|
Predicted distance map
|
|
Predicted contact map
|
Probability to Precision
| Long-Range |
Average probability |
Predicted precision |
| TopL/5 |
0.19 |
22.20 |
| TopL/2 |
0.14 |
17.07 |
Note: The linear model (Average probability vs Predicted precision) was trained on CASP14 dataset
|
Predicted Top 1 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
27.66 |
| TopL/2 |
20.34 |
| TopL |
16.17 |
| Top2L |
14.04 |
| Alignment |
Number |
| N |
19 |
| Neff |
4 |
|
Model comparsion
| Model |
TM-score |
| Model 2 |
0.5332 |
| Model 3 |
0.7083 |
| Model 4 |
0.5107 |
| Model 5 |
0.5594 |
| Average |
0.57790 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 6ik7 |
0.48152 |
| 5t5m |
0.47301 |
| 5t61 |
0.47139 |
| 6ik5 |
0.47042 |
| 5t5i |
0.46943 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 2 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
21.28 |
| TopL/2 |
18.64 |
| TopL |
14.47 |
| Top2L |
11.70 |
| Alignment |
Number |
| N |
19 |
| Neff |
4 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.5332 |
| Model 3 |
0.5227 |
| Model 4 |
0.4614 |
| Model 5 |
0.4768 |
| Average |
0.49852 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 4j05 |
0.47773 |
| 6afw |
0.47106 |
| 6afx |
0.47076 |
| 6afu |
0.47016 |
| 6afv |
0.47013 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 3 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
29.79 |
| TopL/2 |
23.73 |
| TopL |
18.30 |
| Top2L |
14.68 |
| Alignment |
Number |
| N |
19 |
| Neff |
4 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.7083 |
| Model 2 |
0.5227 |
| Model 4 |
0.4653 |
| Model 5 |
0.5480 |
| Average |
0.56107 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 5lzr |
0.48219 |
| 4av3 |
0.48150 |
| 2rdy |
0.46680 |
| 5nug |
0.46438 |
| 6j72 |
0.46388 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 4 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
12.77 |
| TopL/2 |
13.56 |
| TopL |
10.64 |
| Top2L |
10.64 |
| Alignment |
Number |
| N |
19 |
| Neff |
4 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.5107 |
| Model 2 |
0.4614 |
| Model 3 |
0.4653 |
| Model 5 |
0.4135 |
| Average |
0.46272 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 4av6 |
0.52337 |
| 5gpj |
0.49349 |
| 5l27 |
0.49289 |
| 6aft |
0.49120 |
| 5kyn |
0.49019 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
Predicted Top 5 Tertiary structure
|
|
|
| Long-Range |
Precision |
| TopL/5 |
19.15 |
| TopL/2 |
18.64 |
| TopL |
13.62 |
| Top2L |
14.68 |
| Alignment |
Number |
| N |
19 |
| Neff |
4 |
|
Model comparsion
| Model |
TM-score |
| Model 1 |
0.5594 |
| Model 2 |
0.4768 |
| Model 3 |
0.5480 |
| Model 4 |
0.4135 |
| Average |
0.49943 |
Radius Gyration
|
Similar pdbs
| PDB |
TM-score |
| 3t0u |
0.46348 |
| 3sx1 |
0.46062 |
| 5omo |
0.46010 |
| 4ev5 |
0.45996 |
| 3x40 |
0.45929 |
|
Note: The model is built by ab initio method, no significant templates are found!
|
References
[1] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. bioRxiv, 552422.
[2] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.
[3] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.
[4] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.
